Rroxscaffold_2G00117420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002682
Physical Location & Seq
Reverse (-)
45275525 .. 45289187
13663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117420.1

Sequence Viewer

Length: 342 bp
ATGGCAACTGCAATGCGGTCGTTCTCCGAAATTGAAAAATCGCCAATTTTTCTCCAAGGGATTTCTCCCTCCTCGGGCCACCTTTTGAAGCGAAACCAAGCCCGGACCAGCTCGCCTCCTCCCCACGAGCAGCCGGTGGCCTCCTCTCCTCCTCACGGAGGTTACGCGGCGGTAGAGCTTGTTGATTGGATTTACCGGTGGCAAACACAGATCTTTATCTACACGGGGAATAAAAAAATTGAAAGATCACAAAACAAAACTTTGATGAATGACACAAAGAGGCAAGTGAGTCAATTACTCAAGCAACATCAAAGTAGTGAGGTTGTTCGGACATTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.78

Weight (kDa)

9.99

Isoelectric Point (pI)

85.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 167
AciI CCGC 3 cut(s) 16, 167, 170
AfiI CCNNNNNNNGG 3 cut(s) 74, 155, 158
AgeI ACCGGT 1 cut(s) 195
AgsI TTSAA 3 cut(s) 35, 88, 242
AluBI AGCT 2 cut(s) 111, 178
AluI AGCT 2 cut(s) 111, 178
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 3 cut(s) 76, 138, 336
ApeKI GCWGC 1 cut(s) 130
AsiGI ACCGGT 1 cut(s) 195
AspS9I GGNCC 2 cut(s) 76, 105
AsuC2I CCSGG 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 73
AvaII GGWCC 1 cut(s) 105
BauI CACGAG 1 cut(s) 125
BbvI GCAGC 1 cut(s) 142
BcgI CGANNNNNNTGC 1 cut(s) 34
BcnI CCSGG 1 cut(s) 103
BfaI CTAG 1 cut(s) 340
BglII AGATCT 1 cut(s) 210
BisI GCNGC 2 cut(s) 131, 168
BlsI GCNGC 2 cut(s) 132, 169
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 76, 105
BmrFI CCNGG 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 55, 72
BsaWI WCCGGW 1 cut(s) 195
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 155, 158
Bse118I RCCGGY 2 cut(s) 133, 195
Bse3DI GCAATG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 215
BseDI CCNNGG 2 cut(s) 55, 72
BseJI GATNNNNATC 1 cut(s) 215
BseLI CCNNNNNNNGG 3 cut(s) 74, 155, 158
BseMI GCAATG 1 cut(s) 18
BseRI GAGGAG 5 cut(s) 61, 108, 133, 138, 141
BseXI GCAGC 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 167
Bsh1285I CGRYCG 1 cut(s) 20
BshFI GGCC 3 cut(s) 78, 140, 338
BshTI ACCGGT 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 73
BsiSI CCGG 3 cut(s) 103, 134, 196
BslI CCNNNNNNNGG 3 cut(s) 74, 155, 158
BsnI GGCC 3 cut(s) 78, 140, 338
BsoBI CYCGRG 1 cut(s) 73
Bsp143I GATC 2 cut(s) 210, 245
BspACI CCGC 3 cut(s) 16, 167, 170
BspANI GGCC 3 cut(s) 78, 140, 338
BspFNI CGCG 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 18
BsrFI RCCGGY 2 cut(s) 133, 195
BssAI RCCGGY 2 cut(s) 133, 195
BssECI CCNNGG 2 cut(s) 55, 72
BssMI GATC 2 cut(s) 210, 245
BssSI CACGAG 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 113
BstENI CCTNNNNNAGG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 167
BstKTI GATC 2 cut(s) 213, 248
BstMBI GATC 2 cut(s) 210, 245
BstMCI CGRYCG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 101
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BsuRI GGCC 3 cut(s) 78, 140, 338
Cac8I GCNNGC 1 cut(s) 113
Cfr10I RCCGGY 2 cut(s) 133, 195
Cfr13I GGNCC 2 cut(s) 76, 105
CspAI ACCGGT 1 cut(s) 195
CviJI RGCY 7 cut(s) 78, 101, 111, 133, 140, 178, 338
CviKI_1 RGCY 7 cut(s) 78, 101, 111, 133, 140, 178, 338
DpnI GATC 2 cut(s) 212, 247
DpnII GATC 2 cut(s) 210, 245
Eco130I CCWWGG 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 73
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 131, 168
Fsp4HI GCNGC 2 cut(s) 131, 168
FspBI CTAG 1 cut(s) 340
GluI GCNGC 2 cut(s) 131, 168
HaeIII GGCC 3 cut(s) 78, 140, 338
HapII CCGG 3 cut(s) 103, 134, 196
HinfI GANTC 1 cut(s) 289
HpaII CCGG 3 cut(s) 103, 134, 196
Hpy188I TCNGA 2 cut(s) 28, 330
HpyCH4V TGCA 1 cut(s) 11
Kzo9I GATC 2 cut(s) 210, 245
LpnPI CCDG 4 cut(s) 116, 121, 147, 209
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 1 cut(s) 340
MaeIII GTNAC 1 cut(s) 161
MalI GATC 2 cut(s) 212, 247
MboI GATC 2 cut(s) 210, 245
MflI RGATCY 1 cut(s) 210
MluCI AATT 4 cut(s) 30, 45, 237, 293
MlyI GAGTC 1 cut(s) 298
MspI CCGG 3 cut(s) 103, 134, 196
MspR9I CCNGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 167
NciI CCSGG 1 cut(s) 103
NdeII GATC 2 cut(s) 210, 245
PinAI ACCGGT 1 cut(s) 195
PkrI GCNGC 2 cut(s) 132, 169
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
PspPI GGNCC 2 cut(s) 76, 105
PsuI RGATCY 1 cut(s) 210
SatI GCNGC 2 cut(s) 131, 168
Sau3AI GATC 2 cut(s) 210, 245
Sau96I GGNCC 2 cut(s) 76, 105
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 103
SetI ASST 5 cut(s) 84, 113, 163, 180, 324
SinI GGWCC 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 4 cut(s) 30, 45, 237, 293
SsiI CCGC 3 cut(s) 16, 167, 170
SspMI CTAG 1 cut(s) 340
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 55
TasI AATT 4 cut(s) 30, 45, 237, 293
TauI GCSGC 1 cut(s) 170
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 105
XagI CCTNNNNNAGG 1 cut(s) 156
XspI CTAG 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.