Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002682

Physical Location & Seq

Genomic Coordinates Forward (+)

28484281 .. 28486253

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008295

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTACTTCGATGATTCTCAGTCACACAACCTCCAACCCTACTACGAACCAGAACCAGAAGAAGATGAAAACTCCGGTGACAATTACGCTTCGAATTCAACATCCCCGCCGACCACTTGCTCCCAGGGCCACCACTCCACACTCGTCCTCCAAGATCTCGTCACCCGTCTATGCGATTCCGGCGATCCCTCGCTCCCTGCTGAGTTCATCGCTCGGCTTTCCGATCGCCTCTCTTCCTGCGCCTTGGCTTGGAGTCGCCATCAGCTTCACTGCTTAGGAGTTCTCTTAAACTGTCAGCAGAGTAATCCTTTTGCTCACATTAGAGACAAAAATGGCCTCATTACGAATCTTGTTTCAGGTCTGCAATTACCAAGTGAAGAGATTCAGGGAGAAATCCTGTTTGTTCTGTACAAAGTATCTGCTCTCCGCTTTGCATCAGAGGATGCTGATGGATCTAATCTTTTATTTTCCTTTTTCCCCAAGTTAGTGCGGGCCCTCATGAAGACCCAAAGTGATGACGTCCGCTTGAATTGTATAGAGGTGTGTAAATATGGAAATTCATCTGTGATATTCACCTGTAAATATGGGATTCGGACCAAGTCTTCAGCAATCAAACTTGGTAGTGCTAGTTGGTTTGATTTTAAAGGTCTGGATTCTAGATACGTGATGAAGATCCAGCTTGGGTTCAACACTCCAAGTAACATTTGTTACTTTGATGAGCAAATTAGTCCAATGAAGTACTCTGGACAGGAAAGGTGTGCCGGGAATGTGGTAGTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

261

Amino Acids

29.01

Weight (kDa)

5.36

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14180 AT4G14180
fragaria_vesca	FvH4_4g12860
malus_domestica	MD04G1022200.v1.1
prunus_persica	Prupe.1G172400_v2.0.a1 Prupe.1G176200_v2.0.a1
pyrus_communis	pycom04g01870
rosa_chinensis	RchiOBHm_Chr4g0412451 RchiOBHm_Chr4g0412511
rosa_laevigata	RLG00000008284 RLG00000008287 RLG00000008289 RLG00000008295 RLG00000008298
rosa_multiflora	Rmu_sc0002604.1_g000020 Rmu_sc0003914.1_g000006 Rmu_sc0005615.1_g000012
rosa_roxburghii	Rroxscaffold_161G00448090 Rroxscaffold_2G00117420 Rroxscaffold_4G00325160 Rroxscaffold_5G00356600 Rroxscaffold_5G00356610 Rroxscaffold_5G00356660 Rroxscaffold_5G00356680 Rroxscaffold_5G00356720 Rroxscaffold_7G00197050
rosa_rugosa	Rorug04G0103300 Rorug04G0103400 Rorug04G0103700.1
rosa_samantha	Rh4AG173200 Rh4AG173600 Rh4BG173100 Rh4CG184000 Rh4CG184500 Rh4DG167600 Rh4DG168300 Rh4DG168400 Rh4DG168900
rosa_wichuraiana	Rw4G014490 Rw4G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	522
AciI	CCGC	4 cut(s)	107, 427, 490, 523
AclWI	GGATC	3 cut(s)	179, 460, 667
AcsI	RAATTY	2 cut(s)	94, 556
AcuI	CTGAAG	1 cut(s)	588
AcyI	GRCGYC	1 cut(s)	519
AfaI	GTAC	3 cut(s)	5, 410, 740
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	99, 529, 688
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	2 cut(s)	265, 679
AluI	AGCT	2 cut(s)	265, 679
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	3 cut(s)	179, 460, 667
AoxI	GGCC	3 cut(s)	127, 334, 492
ApaI	GGGCCC	1 cut(s)	496
ApoI	RAATTY	2 cut(s)	94, 556
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	4 cut(s)	127, 492, 493, 594
AsuC2I	CCSGG	1 cut(s)	763
AsuHPI	GGTGA	3 cut(s)	89, 154, 565
AsuII	TTCGAA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	594
BaeGI	GKGCMC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	496
BbsI	GAAGAC	2 cut(s)	509, 594
BccI	CCATC	2 cut(s)	267, 443
BciT130I	CCWGG	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	763
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	2 cut(s)	627, 657
BglII	AGATCT	1 cut(s)	154
BmcAI	AGTACT	1 cut(s)	740
Bme1390I	CCNGG	2 cut(s)	125, 763
Bme18I	GGWCC	1 cut(s)	594
BmgT120I	GGNCC	4 cut(s)	127, 492, 493, 594
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	2 cut(s)	125, 763
BmsI	GCATC	2 cut(s)	433, 443
BpiI	GAAGAC	2 cut(s)	509, 594
Bpu10I	CCTNAGC	1 cut(s)	274
Bpu14I	TTCGAA	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	763
BsaAI	YACGTR	1 cut(s)	664
BsaBI	GATNNNNATC	1 cut(s)	671
BsaHI	GRCGYC	1 cut(s)	519
BsaJI	CCNNGG	3 cut(s)	123, 124, 243
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 132, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	3 cut(s)	123, 124, 243
BseGI	GGATG	2 cut(s)	101, 448
BseJI	GATNNNNATC	1 cut(s)	671
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	32, 192
BseSI	GKGCMC	1 cut(s)	496
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	3 cut(s)	129, 336, 494
BsiEI	CGRYCG	1 cut(s)	226
BsiSI	CCGG	3 cut(s)	75, 180, 762
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	318
BsnI	GGCC	3 cut(s)	129, 336, 494
Bsp119I	TTCGAA	1 cut(s)	92
Bsp120I	GGGCCC	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	5 cut(s)	154, 184, 223, 452, 672
BspACI	CCGC	4 cut(s)	107, 427, 490, 523
BspANI	GGCC	3 cut(s)	129, 336, 494
BspCNI	CTCAG	2 cut(s)	31, 193
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	494
BspPI	GGATC	3 cut(s)	179, 460, 667
BspT104I	TTCGAA	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	408
BssECI	CCNNGG	3 cut(s)	123, 124, 243
BssMI	GATC	5 cut(s)	154, 184, 223, 452, 672
BssNI	GRCGYC	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	2 cut(s)	238, 372
BstACI	GRCGYC	1 cut(s)	519
BstAUI	TGTACA	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	664
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	3 cut(s)	18, 201, 274
BstF5I	GGATG	2 cut(s)	101, 448
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	5 cut(s)	157, 187, 226, 455, 675
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	5 cut(s)	154, 184, 223, 452, 672
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 180
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	123, 761
BstSLI	GKGCMC	1 cut(s)	496
BstV2I	GAAGAC	2 cut(s)	509, 594
BstX2I	RGATCY	3 cut(s)	154, 452, 672
BstYI	RGATCY	3 cut(s)	154, 452, 672
BsuRI	GGCC	3 cut(s)	129, 336, 494
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	101, 448
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	492
CciI	TCATGA	1 cut(s)	498
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	4 cut(s)	127, 492, 493, 594
Csp6I	GTAC	3 cut(s)	4, 409, 739
CviAII	CATG	1 cut(s)	499
CviJI	RGCY	7 cut(s)	129, 217, 248, 265, 336, 494, 679
CviKI_1	RGCY	7 cut(s)	129, 217, 248, 265, 336, 494, 679
CviQI	GTAC	3 cut(s)	4, 409, 739
DdeI	CTNAG	3 cut(s)	18, 201, 274
DpnI	GATC	5 cut(s)	156, 186, 225, 454, 674
DpnII	GATC	5 cut(s)	154, 184, 223, 452, 672
DraI	TTTAAA	1 cut(s)	643
Eam1104I	CTCTTC	2 cut(s)	238, 372
EarI	CTCTTC	2 cut(s)	238, 372
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	588
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	502
FaiI	YATR	5 cut(s)	172, 500, 536, 552, 585
FatI	CATG	1 cut(s)	498
FauI	CCCGC	2 cut(s)	114, 483
FokI	GGATG	2 cut(s)	88, 455
FriOI	GRGCYC	1 cut(s)	496
FspBI	CTAG	2 cut(s)	627, 657
GlaI	GCGC	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	129, 336, 494
HapII	CCGG	3 cut(s)	75, 180, 762
HhaI	GCGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	519
Hin1II	CATG	1 cut(s)	502
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HinfI	GANTC	7 cut(s)	14, 176, 253, 346, 382, 589, 653
HpaII	CCGG	3 cut(s)	75, 180, 762
HphI	GGTGA	3 cut(s)	89, 154, 565
Hpy188I	TCNGA	3 cut(s)	223, 439, 594
Hpy188III	TCNNGA	4 cut(s)	499, 650, 657, 744
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	2 cut(s)	519, 663
HpyCH4V	TGCA	2 cut(s)	364, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 180
HpyF3I	CTNAG	3 cut(s)	18, 201, 274
HpySE526I	ACGT	2 cut(s)	519, 663
Hsp92I	GRCGYC	1 cut(s)	519
Hsp92II	CATG	1 cut(s)	502
HspAI	GCGC	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	154, 184, 223, 452, 672
LmnI	GCTCC	2 cut(s)	125, 198
LweI	GCATC	2 cut(s)	433, 443
MaeI	CTAG	2 cut(s)	627, 657
MaeII	ACGT	2 cut(s)	519, 663
MaeIII	GTNAC	5 cut(s)	21, 77, 160, 698, 707
MalI	GATC	5 cut(s)	156, 186, 225, 454, 674
MboI	GATC	5 cut(s)	154, 184, 223, 452, 672
MboII	GAAGA	7 cut(s)	71, 74, 225, 389, 514, 594, 682
MflI	RGATCY	3 cut(s)	154, 452, 672
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	6 cut(s)	82, 94, 365, 529, 556, 723
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	8 cut(s)	41, 158, 199, 239, 347, 433, 506, 532
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	2 cut(s)	287, 642
MspI	CCGG	3 cut(s)	75, 180, 762
MspR9I	CCNGG	2 cut(s)	125, 763
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	126, 180
NciI	CCSGG	1 cut(s)	763
NdeII	GATC	5 cut(s)	154, 184, 223, 452, 672
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	1 cut(s)	494
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	3 cut(s)	21, 77, 160
NspV	TTCGAA	1 cut(s)	92
PagI	TCATGA	1 cut(s)	498
PasI	CCCWGGG	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	6 cut(s)	14, 176, 346, 382, 589, 653
PflFI	GACNNNGTC	1 cut(s)	598
Ple19I	CGATCG	1 cut(s)	226
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
Ppu21I	YACGTR	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	494
PspOMI	GGGCCC	1 cut(s)	492
PspPI	GGNCC	4 cut(s)	127, 492, 493, 594
PsuI	RGATCY	3 cut(s)	154, 452, 672
PsyI	GACNNNGTC	1 cut(s)	598
PvuI	CGATCG	1 cut(s)	226
RsaI	GTAC	3 cut(s)	5, 410, 740
RsaNI	GTAC	3 cut(s)	4, 409, 739
SaqAI	TTAA	2 cut(s)	287, 642
Sau3AI	GATC	5 cut(s)	154, 184, 223, 452, 672
Sau96I	GGNCC	4 cut(s)	127, 492, 493, 594
ScaI	AGTACT	1 cut(s)	740
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	125, 763
SduI	GDGCHC	1 cut(s)	496
SfaNI	GCATC	2 cut(s)	433, 443
SfuI	TTCGAA	1 cut(s)	92
SinI	GGWCC	1 cut(s)	594
Sse9I	AATT	6 cut(s)	82, 94, 365, 529, 556, 723
SsiI	CCGC	4 cut(s)	107, 427, 490, 523
SspMI	CTAG	2 cut(s)	627, 657
StyD4I	CCNGG	2 cut(s)	123, 761
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	2 cut(s)	522, 666
TaqI	TCGA	2 cut(s)	9, 92
TasI	AATT	6 cut(s)	82, 94, 365, 529, 556, 723
TatI	WGTACW	3 cut(s)	3, 408, 738
TfiI	GAWTC	6 cut(s)	14, 176, 346, 382, 589, 653
Tru1I	TTAA	2 cut(s)	287, 642
Tru9I	TTAA	2 cut(s)	287, 642
TscAI	CASTG	1 cut(s)	275
TseFI	GTSAC	3 cut(s)	21, 77, 160
Tsp45I	GTSAC	3 cut(s)	21, 77, 160
TspDTI	ATGAA	6 cut(s)	81, 196, 515, 549, 683, 749
TspRI	CASTG	1 cut(s)	275
Tth111I	GACNNNGTC	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	2 cut(s)	94, 556
XbaI	TCTAGA	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	2 cut(s)	627, 657
ZraI	GACGTC	1 cut(s)	520
ZrmI	AGTACT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.