Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002682

Physical Location & Seq

Genomic Coordinates Reverse (-)

36013881 .. 36020799

Gene Structure 6919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00356660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTACTTCGACGATTCTCAGTCACACAACCTCCAACACTACTACGGACCTGAACCAGAAGAAGATGAAGACTCCGGTGACAATTACGCTTCGCCGCCGCCGACTTGCTCCCAGGGCCACCGCTCCACTCTCGTCCTCCAAACCAAGCAAGGCGGCTCCATCTGCCTCCTCTGCTTCTCCAATCTCGTCTCGAACCCTCAATCTCCCACCGTCCACGTGTCCTACGCGCTCTCCCAGCTCTCCCAGGCCCTCTCCGACCCTCCCTTCCTCCGCTCCCTCCTCACCTTCCACTCTCACCTCCTCGTCTCCCCGCTCGTCCAAACCCTAGCCTCCTTCGACGACGACCCCATCGCACGACAAGTCGTGGATCTCGTCGCCGGTCTTTGCCATTCCGGCGATCCCTCGCTCGCTGCTGAGTTCGTCGCTCGGCTTTCCGATCTCCTCTCTTCCGGCGCCTTGGCTTGGAGTCGCCGTCAGATTTACACGCTTCACTGCTTAGGAGTTCTCTTAAACTGTCAGCAGAGTAATCCTTTTGCTCTCATTAGAGACAAAAATGGCCTCATTACAAATCTTGTTTCAGGTCTTCAATTACCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

21.7

Weight (kDa)

5.29

Isoelectric Point (pI)

70.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14180 AT4G14180
fragaria_vesca	FvH4_4g12860
malus_domestica	MD04G1022200.v1.1
prunus_persica	Prupe.1G172400_v2.0.a1 Prupe.1G176200_v2.0.a1
pyrus_communis	pycom04g01870
rosa_chinensis	RchiOBHm_Chr4g0412451 RchiOBHm_Chr4g0412511
rosa_laevigata	RLG00000008284 RLG00000008287 RLG00000008289 RLG00000008295 RLG00000008298
rosa_multiflora	Rmu_sc0002604.1_g000020 Rmu_sc0003914.1_g000006 Rmu_sc0005615.1_g000012
rosa_roxburghii	Rroxscaffold_161G00448090 Rroxscaffold_2G00117420 Rroxscaffold_4G00325160 Rroxscaffold_5G00356600 Rroxscaffold_5G00356610 Rroxscaffold_5G00356660 Rroxscaffold_5G00356680 Rroxscaffold_5G00356720 Rroxscaffold_7G00197050
rosa_rugosa	Rorug04G0103300 Rorug04G0103400 Rorug04G0103700.1
rosa_samantha	Rh4AG173200 Rh4AG173600 Rh4BG173100 Rh4CG184000 Rh4CG184500 Rh4DG167600 Rh4DG168300 Rh4DG168400 Rh4DG168900
rosa_wichuraiana	Rw4G014490 Rw4G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccBSI	CCGCTC	3 cut(s)	123, 273, 313
AccII	CGCG	1 cut(s)	227
AciI	CCGC	6 cut(s)	95, 98, 121, 153, 271, 311
AclWI	GGATC	2 cut(s)	375, 392
AcvI	CACGTG	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	462
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	587
AjnI	CCWGG	2 cut(s)	111, 243
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw26I	GTCTC	3 cut(s)	193, 310, 540
AlwI	GGATC	2 cut(s)	375, 392
AoxI	GGCC	3 cut(s)	115, 246, 556
ApeKI	GCWGC	1 cut(s)	410
AspLEI	GCGC	2 cut(s)	229, 455
AspS9I	GGNCC	3 cut(s)	47, 115, 247
AsuHPI	GGTGA	3 cut(s)	89, 274, 287
AvaII	GGWCC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	452
BbrPI	CACGTG	1 cut(s)	217
BbsI	GAAGAC	2 cut(s)	75, 575
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	2 cut(s)	167, 356
BceAI	ACGGC	1 cut(s)	456
BciT130I	CCWGG	2 cut(s)	113, 245
BcoDI	GTCTC	3 cut(s)	193, 310, 540
BfaI	CTAG	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	456
BglI	GCCNNNNNGGC	1 cut(s)	393
BisI	GCNGC	4 cut(s)	95, 98, 154, 411
BlsI	GCNGC	4 cut(s)	96, 99, 155, 412
Bme1390I	CCNGG	2 cut(s)	113, 245
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	3 cut(s)	47, 115, 247
BmiI	GGNNCC	2 cut(s)	157, 454
BmrFI	CCNGG	2 cut(s)	113, 245
BpiI	GAAGAC	2 cut(s)	75, 575
Bpu10I	CCTNAGC	1 cut(s)	496
BsaAI	YACGTR	1 cut(s)	217
BsaHI	GRCGYC	1 cut(s)	453
BsaJI	CCNNGG	4 cut(s)	111, 112, 243, 456
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	6 cut(s)	15, 45, 215, 245, 457, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse118I	RCCGGY	1 cut(s)	377
BseBI	CCWGG	2 cut(s)	113, 245
BseDI	CCNNGG	4 cut(s)	111, 112, 243, 456
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	32, 405
BseRI	GAGGAG	4 cut(s)	158, 269, 290, 431
BseXI	GCAGC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	3 cut(s)	117, 248, 558
BshNI	GGYRCC	1 cut(s)	452
BsiSI	CCGG	4 cut(s)	75, 378, 393, 450
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	3 cut(s)	193, 310, 540
BsmBI	CGTCTC	2 cut(s)	193, 310
BsnI	GGCC	3 cut(s)	117, 248, 558
Bsp143I	GATC	3 cut(s)	367, 397, 436
BspACI	CCGC	6 cut(s)	95, 98, 121, 153, 271, 311
BspANI	GGCC	3 cut(s)	117, 248, 558
BspCNI	CTCAG	2 cut(s)	31, 406
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	2 cut(s)	157, 454
BspPI	GGATC	2 cut(s)	375, 392
BspT107I	GGYRCC	1 cut(s)	452
BsrBI	CCGCTC	3 cut(s)	123, 273, 313
BsrFI	RCCGGY	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	4 cut(s)	111, 112, 243, 456
BssMI	GATC	3 cut(s)	367, 397, 436
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	113, 245
Bst4CI	ACNGT	2 cut(s)	211, 515
Bst6I	CTCTTC	1 cut(s)	451
BstACI	GRCGYC	1 cut(s)	453
BstBAI	YACGTR	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	3 cut(s)	18, 414, 496
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	2 cut(s)	229, 455
BstKTI	GATC	3 cut(s)	370, 400, 439
BstMAI	GTCTC	3 cut(s)	193, 310, 540
BstMBI	GATC	3 cut(s)	367, 397, 436
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 162, 171, 235, 393
BstNI	CCWGG	2 cut(s)	113, 245
BstSCI	CCNGG	2 cut(s)	111, 243
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	2 cut(s)	75, 575
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	117, 248, 558
BtgZI	GCGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	408
CfoI	GCGC	2 cut(s)	229, 455
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	3 cut(s)	47, 115, 247
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	8 cut(s)	117, 156, 238, 248, 329, 430, 461, 558
CviKI_1	RGCY	8 cut(s)	117, 156, 238, 248, 329, 430, 461, 558
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	3 cut(s)	18, 414, 496
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	3 cut(s)	369, 399, 438
DpnII	GATC	3 cut(s)	367, 397, 436
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	47
Eco72I	CACGTG	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	111, 243
EcoT14I	CCWWGG	1 cut(s)	456
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	456
Esp3I	CGTCTC	2 cut(s)	193, 310
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	4 cut(s)	95, 98, 154, 411
Fsp4HI	GCNGC	4 cut(s)	95, 98, 154, 411
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	2 cut(s)	228, 454
GluI	GCNGC	4 cut(s)	95, 98, 154, 411
GsaI	CCCAGC	1 cut(s)	238
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	3 cut(s)	117, 248, 558
HapII	CCGG	4 cut(s)	75, 378, 393, 450
HhaI	GCGC	2 cut(s)	229, 455
Hin1I	GRCGYC	1 cut(s)	453
Hin6I	GCGC	2 cut(s)	227, 453
HinP1I	GCGC	2 cut(s)	227, 453
HinfI	GANTC	3 cut(s)	14, 71, 466
HpaII	CCGG	4 cut(s)	75, 378, 393, 450
HphI	GGTGA	3 cut(s)	89, 274, 287
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	256, 436, 477
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	5 cut(s)	14, 341, 344, 377, 425
HpyAV	CCTTC	3 cut(s)	274, 295, 343
HpyCH4III	ACNGT	2 cut(s)	211, 515
HpyCH4IV	ACGT	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 162, 171, 235, 393
HpyF3I	CTNAG	3 cut(s)	18, 414, 496
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	453
HspAI	GCGC	2 cut(s)	227, 453
KasI	GGCGCC	1 cut(s)	452
Kzo9I	GATC	3 cut(s)	367, 397, 436
LmnI	GCTCC	4 cut(s)	113, 128, 161, 278
Lsp1109I	GCAGC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	21, 77
MalI	GATC	3 cut(s)	369, 399, 438
MbiI	CCGCTC	3 cut(s)	123, 273, 313
MboI	GATC	3 cut(s)	367, 397, 436
MboII	GAAGA	5 cut(s)	71, 74, 80, 438, 575
MflI	RGATCY	1 cut(s)	367
MluCI	AATT	2 cut(s)	82, 587
Mly113I	GGCGCC	1 cut(s)	453
MlyI	GAGTC	2 cut(s)	65, 475
MmeI	TCCRAC	2 cut(s)	58, 279
MseI	TTAA	1 cut(s)	509
MspI	CCGG	4 cut(s)	75, 378, 393, 450
MspR9I	CCNGG	2 cut(s)	113, 245
MvaI	CCWGG	2 cut(s)	113, 245
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	5 cut(s)	114, 162, 171, 235, 393
NarI	GGCGCC	1 cut(s)	453
NdeII	GATC	3 cut(s)	367, 397, 436
NlaIV	GGNNCC	2 cut(s)	157, 454
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	2 cut(s)	21, 77
PasI	CCCWGGG	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	2 cut(s)	98, 369
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	96, 99, 155, 412
PleI	GAGTC	2 cut(s)	65, 474
PluTI	GGCGCC	1 cut(s)	456
PmaCI	CACGTG	1 cut(s)	217
PmlI	CACGTG	1 cut(s)	217
PpsI	GAGTC	2 cut(s)	65, 474
Ppu21I	YACGTR	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	111, 243
PspCI	CACGTG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	2 cut(s)	111, 243
PspN4I	GGNNCC	2 cut(s)	157, 454
PspPI	GGNCC	3 cut(s)	47, 115, 247
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	4 cut(s)	95, 98, 154, 411
Sau3AI	GATC	3 cut(s)	367, 397, 436
Sau96I	GGNCC	3 cut(s)	47, 115, 247
SchI	GAGTC	2 cut(s)	65, 475
ScrFI	CCNGG	2 cut(s)	113, 245
SetI	ASST	7 cut(s)	33, 52, 219, 240, 287, 300, 583
SfoI	GGCGCC	1 cut(s)	454
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	2 cut(s)	82, 587
SsiI	CCGC	6 cut(s)	95, 98, 121, 153, 271, 311
SspDI	GGCGCC	1 cut(s)	452
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	111, 243
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	211, 515
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	9, 191, 336
TasI	AATT	2 cut(s)	82, 587
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	3 cut(s)	97, 100, 156
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	1 cut(s)	497
TseFI	GTSAC	2 cut(s)	21, 77
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	2 cut(s)	21, 77
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	47
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.