AtPRD1,PRD1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14180 AT4G14180 |
| fragaria_vesca | FvH4_4g12860 |
| malus_domestica | MD04G1022200.v1.1 |
| prunus_persica | Prupe.1G172400_v2.0.a1 Prupe.1G176200_v2.0.a1 |
| pyrus_communis | pycom04g01870 |
| rosa_chinensis | RchiOBHm_Chr4g0412451 RchiOBHm_Chr4g0412511 |
| rosa_laevigata | RLG00000008284 RLG00000008287 RLG00000008289 RLG00000008295 RLG00000008298 |
| rosa_multiflora | Rmu_sc0002604.1_g000020 Rmu_sc0003914.1_g000006 Rmu_sc0005615.1_g000012 |
| rosa_roxburghii | Rroxscaffold_161G00448090 Rroxscaffold_2G00117420 Rroxscaffold_4G00325160 Rroxscaffold_5G00356600 Rroxscaffold_5G00356610 Rroxscaffold_5G00356660 Rroxscaffold_5G00356680 Rroxscaffold_5G00356720 Rroxscaffold_7G00197050 |
| rosa_rugosa | Rorug04G0103300 Rorug04G0103400 Rorug04G0103700.1 |
| rosa_samantha | Rh4AG173200 Rh4AG173600 Rh4BG173100 Rh4CG184000 Rh4CG184500 Rh4DG167600 Rh4DG168300 Rh4DG168400 Rh4DG168900 |
| rosa_wichuraiana | Rw4G014490 Rw4G014550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 119 |
| AcuI | CTGAAG | 1 cut(s) | 33 |
| AfaI | GTAC | 2 cut(s) | 133, 195 |
| AflIII | ACRYGT | 1 cut(s) | 280 |
| AgsI | TTSAA | 3 cut(s) | 108, 203, 230 |
| AhlI | ACTAGT | 1 cut(s) | 196 |
| AjiI | CACGTC | 1 cut(s) | 281 |
| AluBI | AGCT | 2 cut(s) | 24, 273 |
| AluI | AGCT | 2 cut(s) | 24, 273 |
| AoxI | GGCC | 2 cut(s) | 84, 94 |
| ApeKI | GCWGC | 1 cut(s) | 273 |
| AspS9I | GGNCC | 1 cut(s) | 95 |
| BbvI | GCAGC | 1 cut(s) | 260 |
| BccI | CCATC | 2 cut(s) | 38, 95 |
| BcuI | ACTAGT | 1 cut(s) | 196 |
| BfaI | CTAG | 2 cut(s) | 137, 197 |
| BfmI | CTRYAG | 1 cut(s) | 274 |
| BisI | GCNGC | 1 cut(s) | 274 |
| BlsI | GCNGC | 1 cut(s) | 275 |
| BmcAI | AGTACT | 1 cut(s) | 195 |
| BmgBI | CACGTC | 1 cut(s) | 281 |
| BmgT120I | GGNCC | 1 cut(s) | 95 |
| BmsI | GCATC | 1 cut(s) | 67 |
| BsaBI | GATNNNNATC | 1 cut(s) | 57 |
| Bse3DI | GCAATG | 1 cut(s) | 210 |
| Bse8I | GATNNNNATC | 1 cut(s) | 57 |
| BseGI | GGATG | 2 cut(s) | 58, 176 |
| BseJI | GATNNNNATC | 1 cut(s) | 57 |
| BseMI | GCAATG | 1 cut(s) | 210 |
| BseMII | CTCAG | 2 cut(s) | 72, 227 |
| BseXI | GCAGC | 1 cut(s) | 260 |
| BshFI | GGCC | 2 cut(s) | 86, 96 |
| BsnI | GGCC | 2 cut(s) | 86, 96 |
| Bsp143I | GATC | 1 cut(s) | 126 |
| BspANI | GGCC | 2 cut(s) | 86, 96 |
| BspCNI | CTCAG | 2 cut(s) | 73, 228 |
| BspHI | TCATGA | 1 cut(s) | 290 |
| BspMAI | CTGCAG | 1 cut(s) | 278 |
| BsrDI | GCAATG | 1 cut(s) | 210 |
| BssMI | GATC | 1 cut(s) | 126 |
| Bst4CI | ACNGT | 1 cut(s) | 258 |
| BstC8I | GCNNGC | 1 cut(s) | 33 |
| BstDEI | CTNAG | 2 cut(s) | 81, 236 |
| BstF5I | GGATG | 2 cut(s) | 58, 176 |
| BstKTI | GATC | 1 cut(s) | 129 |
| BstMBI | GATC | 1 cut(s) | 126 |
| BstSFI | CTRYAG | 1 cut(s) | 274 |
| BstV1I | GCAGC | 1 cut(s) | 260 |
| BsuRI | GGCC | 2 cut(s) | 86, 96 |
| BtrI | CACGTC | 1 cut(s) | 281 |
| BtsCI | GGATG | 2 cut(s) | 58, 176 |
| Cac8I | GCNNGC | 1 cut(s) | 33 |
| CciI | TCATGA | 1 cut(s) | 290 |
| Cfr13I | GGNCC | 1 cut(s) | 95 |
| Csp6I | GTAC | 2 cut(s) | 132, 194 |
| CviAII | CATG | 1 cut(s) | 291 |
| CviJI | RGCY | 5 cut(s) | 24, 86, 96, 117, 273 |
| CviKI_1 | RGCY | 5 cut(s) | 24, 86, 96, 117, 273 |
| CviQI | GTAC | 2 cut(s) | 132, 194 |
| DdeI | CTNAG | 2 cut(s) | 81, 236 |
| DpnI | GATC | 1 cut(s) | 128 |
| DpnII | GATC | 1 cut(s) | 126 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 119 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 119 |
| Eco57I | CTGAAG | 1 cut(s) | 33 |
| EcoT22I | ATGCAT | 1 cut(s) | 60 |
| FaeI | CATG | 1 cut(s) | 294 |
| FaiI | YATR | 6 cut(s) | 56, 71, 156, 158, 222, 292 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 84, 116 |
| FatI | CATG | 1 cut(s) | 290 |
| Fnu4HI | GCNGC | 1 cut(s) | 274 |
| FokI | GGATG | 2 cut(s) | 45, 163 |
| Fsp4HI | GCNGC | 1 cut(s) | 274 |
| FspBI | CTAG | 2 cut(s) | 137, 197 |
| GluI | GCNGC | 1 cut(s) | 274 |
| HaeIII | GGCC | 2 cut(s) | 86, 96 |
| Hin1II | CATG | 1 cut(s) | 294 |
| HinfI | GANTC | 1 cut(s) | 287 |
| Hpy166II | GTNNAC | 1 cut(s) | 134 |
| Hpy188I | TCNGA | 2 cut(s) | 13, 66 |
| Hpy188III | TCNNGA | 3 cut(s) | 124, 180, 291 |
| Hpy8I | GTNNAC | 1 cut(s) | 134 |
| HpyAV | CCTTC | 2 cut(s) | 8, 161 |
| HpyCH4III | ACNGT | 1 cut(s) | 258 |
| HpyCH4IV | ACGT | 1 cut(s) | 280 |
| HpyCH4V | TGCA | 3 cut(s) | 58, 215, 276 |
| HpyF3I | CTNAG | 2 cut(s) | 81, 236 |
| HpySE526I | ACGT | 1 cut(s) | 280 |
| Hsp92II | CATG | 1 cut(s) | 294 |
| Kzo9I | GATC | 1 cut(s) | 126 |
| LpnPI | CCDG | 3 cut(s) | 137, 175, 193 |
| Lsp1109I | GCAGC | 1 cut(s) | 260 |
| LweI | GCATC | 1 cut(s) | 67 |
| MaeI | CTAG | 2 cut(s) | 137, 197 |
| MaeII | ACGT | 1 cut(s) | 280 |
| MalI | GATC | 1 cut(s) | 128 |
| MboI | GATC | 1 cut(s) | 126 |
| MboII | GAAGA | 2 cut(s) | 53, 215 |
| MnlI | CCTC | 2 cut(s) | 72, 76 |
| Mph1103I | ATGCAT | 1 cut(s) | 60 |
| NdeII | GATC | 1 cut(s) | 126 |
| NlaIII | CATG | 1 cut(s) | 294 |
| NsiI | ATGCAT | 1 cut(s) | 60 |
| PagI | TCATGA | 1 cut(s) | 290 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PkrI | GCNGC | 1 cut(s) | 275 |
| PspPI | GGNCC | 1 cut(s) | 95 |
| PstI | CTGCAG | 1 cut(s) | 278 |
| RsaI | GTAC | 2 cut(s) | 133, 195 |
| RsaNI | GTAC | 2 cut(s) | 132, 194 |
| SatI | GCNGC | 1 cut(s) | 274 |
| Sau3AI | GATC | 1 cut(s) | 126 |
| Sau96I | GGNCC | 1 cut(s) | 95 |
| ScaI | AGTACT | 1 cut(s) | 195 |
| SetI | ASST | 3 cut(s) | 26, 275, 283 |
| SfaNI | GCATC | 1 cut(s) | 67 |
| SfcI | CTRYAG | 1 cut(s) | 274 |
| SgeI | CNNG | 8 cut(s) | 44, 131, 136, 149, 174, 192, 203, 209 |
| SpeI | ACTAGT | 1 cut(s) | 196 |
| SspMI | CTAG | 2 cut(s) | 137, 197 |
| TaaI | ACNGT | 1 cut(s) | 258 |
| TaiI | ACGT | 1 cut(s) | 283 |
| TatI | WGTACW | 2 cut(s) | 131, 193 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| TseI | GCWGC | 1 cut(s) | 273 |
| TspDTI | ATGAA | 1 cut(s) | 165 |
| XspI | CTAG | 2 cut(s) | 137, 197 |
| ZrmI | AGTACT | 1 cut(s) | 195 |
| Zsp2I | ATGCAT | 1 cut(s) | 60 |