AtPRD1,PRD1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14180 AT4G14180 |
| fragaria_vesca | FvH4_4g12860 |
| malus_domestica | MD04G1022200.v1.1 |
| prunus_persica | Prupe.1G172400_v2.0.a1 Prupe.1G176200_v2.0.a1 |
| pyrus_communis | pycom04g01870 |
| rosa_chinensis | RchiOBHm_Chr4g0412451 RchiOBHm_Chr4g0412511 |
| rosa_laevigata | RLG00000008284 RLG00000008287 RLG00000008289 RLG00000008295 RLG00000008298 |
| rosa_multiflora | Rmu_sc0002604.1_g000020 Rmu_sc0003914.1_g000006 Rmu_sc0005615.1_g000012 |
| rosa_roxburghii | Rroxscaffold_161G00448090 Rroxscaffold_2G00117420 Rroxscaffold_4G00325160 Rroxscaffold_5G00356600 Rroxscaffold_5G00356610 Rroxscaffold_5G00356660 Rroxscaffold_5G00356680 Rroxscaffold_5G00356720 Rroxscaffold_7G00197050 |
| rosa_rugosa | Rorug04G0103300 Rorug04G0103400 Rorug04G0103700.1 |
| rosa_samantha | Rh4AG173200 Rh4AG173600 Rh4BG173100 Rh4CG184000 Rh4CG184500 Rh4DG167600 Rh4DG168300 Rh4DG168400 Rh4DG168900 |
| rosa_wichuraiana | Rw4G014490 Rw4G014550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1481 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1052 |
| AatII | GACGTC | 1 cut(s) | 852 |
| Acc16I | TGCGCA | 1 cut(s) | 3834 |
| AccB1I | GGYRCC | 3 cut(s) | 60, 560, 2549 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2062 |
| AccBSI | CCGCTC | 3 cut(s) | 251, 380, 420 |
| AccI | GTMKAC | 1 cut(s) | 2646 |
| AciI | CCGC | 9 cut(s) | 79, 85, 223, 226, 249, 288, 378, 418, 853 |
| AcsI | RAATTY | 6 cut(s) | 1675, 1708, 2361, 2435, 2778, 3078 |
| AcuI | CTGAAG | 6 cut(s) | 966, 1196, 1329, 1364, 1808, 1821 |
| AcvI | CACGTG | 1 cut(s) | 352 |
| AcyI | GRCGYC | 4 cut(s) | 61, 561, 849, 2550 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 94, 570, 2062, 2257, 3180, 3403, 3544 |
| AflII | CTTAAG | 1 cut(s) | 3029 |
| AflIII | ACRYGT | 2 cut(s) | 1656, 2877 |
| AhlI | ACTAGT | 1 cut(s) | 1408 |
| AjnI | CCWGG | 4 cut(s) | 239, 3139, 3783, 3861 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1773, 1805 |
| Alw21I | GWGCWC | 4 cut(s) | 1862, 2952, 3519, 3701 |
| Alw26I | GTCTC | 8 cut(s) | 417, 487, 639, 819, 1466, 2900, 2998, 3461 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2303, 2431 |
| AoxI | GGCC | 6 cut(s) | 243, 655, 1017, 1027, 2248, 3418 |
| ApeKI | GCWGC | 5 cut(s) | 2699, 2870, 3020, 3038, 3260 |
| ApoI | RAATTY | 6 cut(s) | 1675, 1708, 2361, 2435, 2778, 3078 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1837, 1869, 2581, 2613 |
| AseI | ATTAAT | 1 cut(s) | 3564 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 702, 1410, 1519, 1806, 2384, 3161 |
| AspLEI | GCGC | 5 cut(s) | 63, 563, 810, 2552, 3835 |
| AspS9I | GGNCC | 2 cut(s) | 243, 1028 |
| AsuC2I | CCSGG | 2 cut(s) | 1377, 3545 |
| AsuHPI | GGTGA | 5 cut(s) | 217, 381, 394, 2851, 3862 |
| AsuNHI | GCTAGC | 1 cut(s) | 3764 |
| AxyI | CCTNAGG | 1 cut(s) | 3175 |
| BaeGI | GKGCMC | 1 cut(s) | 357 |
| BamHI | GGATCC | 1 cut(s) | 1189 |
| BanI | GGYRCC | 3 cut(s) | 60, 560, 2549 |
| BanII | GRGCYC | 1 cut(s) | 3519 |
| BauI | CACGAG | 1 cut(s) | 3572 |
| BbrPI | CACGTG | 1 cut(s) | 352 |
| BbsI | GAAGAC | 4 cut(s) | 203, 674, 839, 2343 |
| Bbv12I | GWGCWC | 4 cut(s) | 1862, 2952, 3519, 3701 |
| BbvI | GCAGC | 5 cut(s) | 2711, 2857, 3032, 3050, 3247 |
| BceAI | ACGGC | 3 cut(s) | 564, 2263, 3518 |
| BciT130I | CCWGG | 4 cut(s) | 241, 3141, 3785, 3863 |
| BclI | TGATCA | 1 cut(s) | 3852 |
| BcnI | CCSGG | 2 cut(s) | 1377, 3545 |
| BcoDI | GTCTC | 8 cut(s) | 417, 487, 639, 819, 1466, 2900, 2998, 3461 |
| BcuI | ACTAGT | 1 cut(s) | 1408 |
| BfaI | CTAG | 7 cut(s) | 803, 1070, 1409, 1544, 1889, 2990, 3765 |
| BfmI | CTRYAG | 6 cut(s) | 2290, 2619, 2751, 2871, 3388, 3611 |
| BfoI | RGCGCY | 3 cut(s) | 64, 564, 2553 |
| BfrI | CTTAAG | 1 cut(s) | 3029 |
| BisI | GCNGC | 8 cut(s) | 223, 226, 289, 2700, 2871, 3021, 3039, 3261 |
| BlpI | GCTNAGC | 1 cut(s) | 1239 |
| BlsI | GCNGC | 8 cut(s) | 224, 227, 290, 2701, 2872, 3022, 3040, 3262 |
| BmcAI | AGTACT | 3 cut(s) | 603, 1293, 1797 |
| Bme1390I | CCNGG | 6 cut(s) | 241, 1377, 3141, 3545, 3785, 3863 |
| BmgT120I | GGNCC | 2 cut(s) | 243, 1028 |
| BmiI | GGNNCC | 7 cut(s) | 62, 292, 562, 1191, 1287, 2206, 2551 |
| BmrFI | CCNGG | 6 cut(s) | 241, 1377, 3141, 3545, 3785, 3863 |
| BmrI | ACTGGG | 2 cut(s) | 1608, 1983 |
| BmtI | GCTAGC | 1 cut(s) | 3768 |
| BmuI | ACTGGG | 2 cut(s) | 1608, 1983 |
| BpiI | GAAGAC | 4 cut(s) | 203, 674, 839, 2343 |
| BpmI | CTGGAG | 5 cut(s) | 839, 2183, 3093, 3767, 3957 |
| Bpu10I | CCTNAGC | 2 cut(s) | 433, 595 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1239 |
| BpuEI | CTTGAG | 1 cut(s) | 1487 |
| BpuMI | CCSGG | 2 cut(s) | 1377, 3545 |
| BsaAI | YACGTR | 1 cut(s) | 352 |
| BsaBI | GATNNNNATC | 1 cut(s) | 990 |
| BsaHI | GRCGYC | 4 cut(s) | 61, 561, 849, 2550 |
| BsaJI | CCNNGG | 9 cut(s) | 239, 240, 564, 1745, 1789, 2268, 2479, 3140, 3819 |
| BsaWI | WCCGGW | 3 cut(s) | 202, 485, 1324 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 66, 96, 125, 155 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 94, 570, 2062, 2257, 3180, 3403, 3544 |
| Bse1I | ACTGG | 8 cut(s) | 658, 1289, 1614, 1803, 1950, 1978, 2671, 3158 |
| Bse21I | CCTNAGG | 1 cut(s) | 3175 |
| Bse3DI | GCAATG | 4 cut(s) | 1143, 1848, 2472, 3528 |
| Bse8I | GATNNNNATC | 1 cut(s) | 990 |
| BseBI | CCWGG | 4 cut(s) | 241, 3141, 3785, 3863 |
| BseDI | CCNNGG | 9 cut(s) | 239, 240, 564, 1745, 1789, 2268, 2479, 3140, 3819 |
| BseJI | GATNNNNATC | 1 cut(s) | 990 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 94, 570, 2062, 2257, 3180, 3403, 3544 |
| BseMI | GCAATG | 4 cut(s) | 1143, 1848, 2472, 3528 |
| BseNI | ACTGG | 8 cut(s) | 658, 1289, 1614, 1803, 1950, 1978, 2671, 3158 |
| BseRI | GAGGAG | 7 cut(s) | 293, 376, 397, 1381, 1484, 1678, 3338 |
| BseSI | GKGCMC | 1 cut(s) | 357 |
| BseXI | GCAGC | 5 cut(s) | 2711, 2857, 3032, 3050, 3247 |
| BsgI | GTGCAG | 3 cut(s) | 3030, 3247, 3811 |
| Bsh1285I | CGRYCG | 1 cut(s) | 547 |
| BshFI | GGCC | 6 cut(s) | 245, 657, 1019, 1029, 2250, 3420 |
| BshNI | GGYRCC | 3 cut(s) | 60, 560, 2549 |
| BsiEI | CGRYCG | 1 cut(s) | 547 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1862, 2952, 3519, 3701 |
| BsiSI | CCGG | 9 cut(s) | 203, 486, 501, 558, 1193, 1325, 1377, 3455, 3544 |
| BslFI | GGGAC | 5 cut(s) | 919, 1359, 2722, 3521, 3888 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 94, 570, 2062, 2257, 3180, 3403, 3544 |
| BsmAI | GTCTC | 8 cut(s) | 417, 487, 639, 819, 1466, 2900, 2998, 3461 |
| BsmBI | CGTCTC | 2 cut(s) | 417, 487 |
| BsmFI | GGGAC | 5 cut(s) | 919, 1359, 2722, 3521, 3888 |
| BsmI | GAATGC | 3 cut(s) | 1187, 1386, 1627 |
| BsnI | GGCC | 6 cut(s) | 245, 657, 1019, 1029, 2250, 3420 |
| Bsp1286I | GDGCHC | 5 cut(s) | 357, 1862, 2952, 3519, 3701 |
| Bsp1407I | TGTACA | 1 cut(s) | 729 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1239 |
| Bsp19I | CCATGG | 1 cut(s) | 2479 |
| BspACI | CCGC | 9 cut(s) | 79, 85, 223, 226, 249, 288, 378, 418, 853 |
| BspANI | GGCC | 6 cut(s) | 245, 657, 1019, 1029, 2250, 3420 |
| BspHI | TCATGA | 3 cut(s) | 828, 933, 2887 |
| BspLI | GGNNCC | 7 cut(s) | 62, 292, 562, 1191, 1287, 2206, 2551 |
| BspMAI | CTGCAG | 3 cut(s) | 2755, 2875, 3615 |
| BspOI | GCTAGC | 1 cut(s) | 3768 |
| BspQI | GCTCTTC | 1 cut(s) | 3507 |
| BspT107I | GGYRCC | 3 cut(s) | 60, 560, 2549 |
| BspTI | CTTAAG | 1 cut(s) | 3029 |
| BsrBI | CCGCTC | 3 cut(s) | 251, 380, 420 |
| BsrDI | GCAATG | 4 cut(s) | 1143, 1848, 2472, 3528 |
| BsrGI | TGTACA | 1 cut(s) | 729 |
| BsrI | ACTGG | 8 cut(s) | 658, 1289, 1614, 1803, 1950, 1978, 2671, 3158 |
| BssECI | CCNNGG | 9 cut(s) | 239, 240, 564, 1745, 1789, 2268, 2479, 3140, 3819 |
| BssNI | GRCGYC | 4 cut(s) | 61, 561, 849, 2550 |
| BssSI | CACGAG | 1 cut(s) | 3572 |
| BssT1I | CCWWGG | 5 cut(s) | 564, 1745, 1789, 2479, 3819 |
| Bst2BI | CACGAG | 1 cut(s) | 3572 |
| Bst2UI | CCWGG | 4 cut(s) | 241, 3141, 3785, 3863 |
| Bst6I | CTCTTC | 4 cut(s) | 559, 693, 1770, 3507 |
| BstACI | GRCGYC | 4 cut(s) | 61, 561, 849, 2550 |
| BstAFI | CTTAAG | 1 cut(s) | 3029 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2916, 3017, 3213 |
| BstAUI | TGTACA | 1 cut(s) | 729 |
| BstBAI | YACGTR | 1 cut(s) | 352 |
| BstC8I | GCNNGC | 8 cut(s) | 1245, 1463, 2829, 3230, 3258, 3519, 3579, 3766 |
| BstDSI | CCRYGG | 1 cut(s) | 2479 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3178 |
| BstH2I | RGCGCY | 3 cut(s) | 64, 564, 2553 |
| BstHHI | GCGC | 5 cut(s) | 63, 563, 810, 2552, 3835 |
| BstMAI | GTCTC | 8 cut(s) | 417, 487, 639, 819, 1466, 2900, 2998, 3461 |
| BstMCI | CGRYCG | 1 cut(s) | 547 |
| BstNI | CCWGG | 4 cut(s) | 241, 3141, 3785, 3863 |
| BstNSI | RCATGY | 5 cut(s) | 1465, 1660, 2881, 3027, 3463 |
| BstSCI | CCNGG | 6 cut(s) | 239, 1375, 3139, 3543, 3783, 3861 |
| BstSFI | CTRYAG | 6 cut(s) | 2290, 2619, 2751, 2871, 3388, 3611 |
| BstSLI | GKGCMC | 1 cut(s) | 357 |
| BstV1I | GCAGC | 5 cut(s) | 2711, 2857, 3032, 3050, 3247 |
| BstV2I | GAAGAC | 4 cut(s) | 203, 674, 839, 2343 |
| BstX2I | RGATCY | 6 cut(s) | 475, 770, 1189, 3169, 3245, 3635 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2560 |
| BstYI | RGATCY | 6 cut(s) | 475, 770, 1189, 3169, 3245, 3635 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3175 |
| BsuRI | GGCC | 6 cut(s) | 245, 657, 1019, 1029, 2250, 3420 |
| BtgI | CCRYGG | 1 cut(s) | 2479 |
| BtgZI | GCGATG | 1 cut(s) | 442 |
| BtsI | GCAGTG | 3 cut(s) | 589, 2838, 2952 |
| BtsIMutI | CAGTG | 9 cut(s) | 589, 1943, 2208, 2229, 2838, 2952, 3013, 3397, 3807 |
| Cac8I | GCNNGC | 8 cut(s) | 1245, 1463, 2829, 3230, 3258, 3519, 3579, 3766 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2303, 2431 |
| CciI | TCATGA | 3 cut(s) | 828, 933, 2887 |
| CfoI | GCGC | 5 cut(s) | 63, 563, 810, 2552, 3835 |
| Cfr13I | GGNCC | 2 cut(s) | 243, 1028 |
| CseI | GACGC | 1 cut(s) | 1855 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 38, 73 |
| DinI | GGCGCC | 3 cut(s) | 62, 562, 2551 |
| DraI | TTTAAA | 2 cut(s) | 927, 2776 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1052 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1052 |
| Eam1104I | CTCTTC | 4 cut(s) | 559, 693, 1770, 3507 |
| EarI | CTCTTC | 4 cut(s) | 559, 693, 1770, 3507 |
| EciI | GGCGGA | 1 cut(s) | 74 |
| Ecl136II | GAGCTC | 1 cut(s) | 3517 |
| Eco130I | CCWWGG | 5 cut(s) | 564, 1745, 1789, 2479, 3819 |
| Eco24I | GRGCYC | 1 cut(s) | 3519 |
| Eco32I | GATATC | 1 cut(s) | 2748 |
| Eco53kI | GAGCTC | 1 cut(s) | 3517 |
| Eco57I | CTGAAG | 6 cut(s) | 966, 1196, 1329, 1364, 1808, 1821 |
| Eco72I | CACGTG | 1 cut(s) | 352 |
| Eco81I | CCTNAGG | 1 cut(s) | 3175 |
| EcoICRI | GAGCTC | 1 cut(s) | 3517 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3178 |
| EcoRI | GAATTC | 1 cut(s) | 2361 |
| EcoRII | CCWGG | 4 cut(s) | 239, 3139, 3783, 3861 |
| EcoRV | GATATC | 1 cut(s) | 2748 |
| EcoT14I | CCWWGG | 5 cut(s) | 564, 1745, 1789, 2479, 3819 |
| EcoT22I | ATGCAT | 4 cut(s) | 757, 993, 3240, 3465 |
| EcoT38I | GRGCYC | 1 cut(s) | 3519 |
| EgeI | GGCGCC | 3 cut(s) | 62, 562, 2551 |
| EheI | GGCGCC | 3 cut(s) | 62, 562, 2551 |
| ErhI | CCWWGG | 5 cut(s) | 564, 1745, 1789, 2479, 3819 |
| Esp3I | CGTCTC | 2 cut(s) | 417, 487 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1017, 1049, 1504, 1536 |
| FaqI | GGGAC | 5 cut(s) | 919, 1359, 2722, 3521, 3888 |
| FauI | CCCGC | 1 cut(s) | 425 |
| FauNDI | CATATG | 1 cut(s) | 913 |
| FbaI | TGATCA | 1 cut(s) | 3852 |
| FblI | GTMKAC | 1 cut(s) | 2646 |
| Fnu4HI | GCNGC | 8 cut(s) | 223, 226, 289, 2700, 2871, 3021, 3039, 3261 |
| FriOI | GRGCYC | 1 cut(s) | 3519 |
| Fsp4HI | GCNGC | 8 cut(s) | 223, 226, 289, 2700, 2871, 3021, 3039, 3261 |
| FspBI | CTAG | 7 cut(s) | 803, 1070, 1409, 1544, 1889, 2990, 3765 |
| FspI | TGCGCA | 1 cut(s) | 3834 |
| GlaI | GCGC | 5 cut(s) | 62, 562, 809, 2551, 3834 |
| GluI | GCNGC | 8 cut(s) | 223, 226, 289, 2700, 2871, 3021, 3039, 3261 |
| GsuI | CTGGAG | 5 cut(s) | 839, 2183, 3093, 3767, 3957 |
| HaeII | RGCGCY | 3 cut(s) | 64, 564, 2553 |
| HaeIII | GGCC | 6 cut(s) | 245, 657, 1019, 1029, 2250, 3420 |
| HapII | CCGG | 9 cut(s) | 203, 486, 501, 558, 1193, 1325, 1377, 3455, 3544 |
| HgaI | GACGC | 1 cut(s) | 1855 |
| HhaI | GCGC | 5 cut(s) | 63, 563, 810, 2552, 3835 |
| Hin1I | GRCGYC | 4 cut(s) | 61, 561, 849, 2550 |
| Hin6I | GCGC | 5 cut(s) | 61, 561, 808, 2550, 3833 |
| HinP1I | GCGC | 5 cut(s) | 61, 561, 808, 2550, 3833 |
| HincII | GTYRAC | 4 cut(s) | 1619, 2182, 2647, 3049 |
| HindII | GTYRAC | 4 cut(s) | 1619, 2182, 2647, 3049 |
| HindIII | AAGCTT | 3 cut(s) | 1245, 1346, 2958 |
| HpaII | CCGG | 9 cut(s) | 203, 486, 501, 558, 1193, 1325, 1377, 3455, 3544 |
| HphI | GGTGA | 5 cut(s) | 217, 381, 394, 2851, 3862 |
| Hpy99I | CGWCG | 4 cut(s) | 124, 449, 452, 533 |
| HpyCH4IV | ACGT | 3 cut(s) | 351, 849, 1871 |
| HpySE526I | ACGT | 3 cut(s) | 351, 849, 1871 |
| Hsp92I | GRCGYC | 4 cut(s) | 61, 561, 849, 2550 |
| HspAI | GCGC | 5 cut(s) | 61, 561, 808, 2550, 3833 |
| KasI | GGCGCC | 3 cut(s) | 60, 560, 2549 |
| Ksp22I | TGATCA | 1 cut(s) | 3852 |
| LguI | GCTCTTC | 1 cut(s) | 3507 |
| LmnI | GCTCC | 7 cut(s) | 241, 256, 296, 385, 2164, 2204, 3786 |
| Lsp1109I | GCAGC | 5 cut(s) | 2711, 2857, 3032, 3050, 3247 |
| MaeI | CTAG | 7 cut(s) | 803, 1070, 1409, 1544, 1889, 2990, 3765 |
| MaeII | ACGT | 3 cut(s) | 351, 849, 1871 |
| MaeIII | GTNAC | 4 cut(s) | 131, 205, 2326, 3392 |
| MbiI | CCGCTC | 3 cut(s) | 251, 380, 420 |
| MfeI | CAATTG | 2 cut(s) | 2514, 2640 |
| MflI | RGATCY | 6 cut(s) | 475, 770, 1189, 3169, 3245, 3635 |
| MhlI | GDGCHC | 5 cut(s) | 357, 1862, 2952, 3519, 3701 |
| Mly113I | GGCGCC | 3 cut(s) | 61, 561, 2550 |
| MlyI | GAGTC | 4 cut(s) | 193, 1679, 2729, 3923 |
| MmeI | TCCRAC | 7 cut(s) | 168, 386, 1249, 1626, 2681, 3258, 3479 |
| Mph1103I | ATGCAT | 4 cut(s) | 757, 993, 3240, 3465 |
| MroXI | GAANNNNTTC | 6 cut(s) | 702, 1410, 1519, 1806, 2384, 3161 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1446, 1882, 2225, 2380, 2544 |
| MspCI | CTTAAG | 1 cut(s) | 3029 |
| MspI | CCGG | 9 cut(s) | 203, 486, 501, 558, 1193, 1325, 1377, 3455, 3544 |
| MspR9I | CCNGG | 6 cut(s) | 241, 1377, 3141, 3545, 3785, 3863 |
| MunI | CAATTG | 2 cut(s) | 2514, 2640 |
| Mva1269I | GAATGC | 3 cut(s) | 1187, 1386, 1627 |
| MvaI | CCWGG | 4 cut(s) | 241, 3141, 3785, 3863 |
| NarI | GGCGCC | 3 cut(s) | 61, 561, 2550 |
| NciI | CCSGG | 2 cut(s) | 1377, 3545 |
| NcoI | CCATGG | 1 cut(s) | 2479 |
| NdeI | CATATG | 1 cut(s) | 913 |
| NheI | GCTAGC | 1 cut(s) | 3764 |
| NlaIV | GGNNCC | 7 cut(s) | 62, 292, 562, 1191, 1287, 2206, 2551 |
| NmeAIII | GCCGAG | 2 cut(s) | 514, 2293 |
| NmuCI | GTSAC | 3 cut(s) | 131, 205, 3392 |
| NsbI | TGCGCA | 1 cut(s) | 3834 |
| NsiI | ATGCAT | 4 cut(s) | 757, 993, 3240, 3465 |
| NspI | RCATGY | 5 cut(s) | 1465, 1660, 2881, 3027, 3463 |
| PaeI | GCATGC | 1 cut(s) | 1465 |
| PagI | TCATGA | 3 cut(s) | 828, 933, 2887 |
| PasI | CCCWGGG | 1 cut(s) | 240 |
| PciI | ACATGT | 2 cut(s) | 1656, 2877 |
| PciSI | GCTCTTC | 1 cut(s) | 3507 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 226, 477, 1853 |
| PctI | GAATGC | 3 cut(s) | 1187, 1386, 1627 |
| PdmI | GAANNNNTTC | 6 cut(s) | 702, 1410, 1519, 1806, 2384, 3161 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2062 |
| PfoI | TCCNGGA | 1 cut(s) | 1375 |
| PkrI | GCNGC | 8 cut(s) | 224, 227, 290, 2701, 2872, 3022, 3040, 3262 |
| Ple19I | CGATCG | 1 cut(s) | 547 |
| PleI | GAGTC | 4 cut(s) | 193, 1679, 2728, 3922 |
| PluTI | GGCGCC | 3 cut(s) | 64, 564, 2553 |
| PmaCI | CACGTG | 1 cut(s) | 352 |
| PmlI | CACGTG | 1 cut(s) | 352 |
| PpsI | GAGTC | 4 cut(s) | 193, 1679, 2728, 3922 |
| Ppu21I | YACGTR | 1 cut(s) | 352 |
| PscI | ACATGT | 2 cut(s) | 1656, 2877 |
| PshBI | ATTAAT | 1 cut(s) | 3564 |
| PsiI | TTATAA | 1 cut(s) | 1481 |
| Psp124BI | GAGCTC | 1 cut(s) | 3519 |
| Psp6I | CCWGG | 4 cut(s) | 239, 3139, 3783, 3861 |
| PspCI | CACGTG | 1 cut(s) | 352 |
| PspGI | CCWGG | 4 cut(s) | 239, 3139, 3783, 3861 |
| PspN4I | GGNNCC | 7 cut(s) | 62, 292, 562, 1191, 1287, 2206, 2551 |
| PspPI | GGNCC | 2 cut(s) | 243, 1028 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1296, 1328 |
| PstI | CTGCAG | 3 cut(s) | 2755, 2875, 3615 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2303, 2431 |
| PsuI | RGATCY | 6 cut(s) | 475, 770, 1189, 3169, 3245, 3635 |
| PvuI | CGATCG | 1 cut(s) | 547 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1446, 1882, 2225, 2380, 2544 |
| SacI | GAGCTC | 1 cut(s) | 3519 |
| SalI | GTCGAC | 1 cut(s) | 2645 |
| SapI | GCTCTTC | 1 cut(s) | 3507 |
| SatI | GCNGC | 8 cut(s) | 223, 226, 289, 2700, 2871, 3021, 3039, 3261 |
| Sau96I | GGNCC | 2 cut(s) | 243, 1028 |
| ScaI | AGTACT | 3 cut(s) | 603, 1293, 1797 |
| SchI | GAGTC | 4 cut(s) | 193, 1679, 2729, 3923 |
| ScrFI | CCNGG | 6 cut(s) | 241, 1377, 3141, 3545, 3785, 3863 |
| SduI | GDGCHC | 5 cut(s) | 357, 1862, 2952, 3519, 3701 |
| SfcI | CTRYAG | 6 cut(s) | 2290, 2619, 2751, 2871, 3388, 3611 |
| SfoI | GGCGCC | 3 cut(s) | 62, 562, 2551 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1446, 1882, 2225, 2380, 2544 |
| SmlI | CTYRAG | 2 cut(s) | 1466, 3029 |
| SmoI | CTYRAG | 2 cut(s) | 1466, 3029 |
| SpeI | ACTAGT | 1 cut(s) | 1408 |
| SphI | GCATGC | 1 cut(s) | 1465 |
| SsiI | CCGC | 9 cut(s) | 79, 85, 223, 226, 249, 288, 378, 418, 853 |
| SspDI | GGCGCC | 3 cut(s) | 60, 560, 2549 |
| SspMI | CTAG | 7 cut(s) | 803, 1070, 1409, 1544, 1889, 2990, 3765 |
| SstI | GAGCTC | 1 cut(s) | 3519 |
| StyD4I | CCNGG | 6 cut(s) | 239, 1375, 3139, 3543, 3783, 3861 |
| StyI | CCWWGG | 5 cut(s) | 564, 1745, 1789, 2479, 3819 |
| TaiI | ACGT | 3 cut(s) | 354, 852, 1874 |
| TaqI | TCGA | 6 cut(s) | 119, 444, 1814, 1856, 2646, 3721 |
| TaqII | GACCGA | 1 cut(s) | 868 |
| TatI | WGTACW | 8 cut(s) | 105, 113, 601, 729, 1291, 1595, 1795, 3804 |
| TauI | GCSGC | 3 cut(s) | 225, 228, 291 |
| TscAI | CASTG | 9 cut(s) | 596, 1950, 2215, 2229, 2838, 2952, 3013, 3397, 3814 |
| TseFI | GTSAC | 3 cut(s) | 131, 205, 3392 |
| TseI | GCWGC | 5 cut(s) | 2699, 2870, 3020, 3038, 3260 |
| Tsp45I | GTSAC | 3 cut(s) | 131, 205, 3392 |
| TspGWI | ACGGA | 1 cut(s) | 3628 |
| TspRI | CASTG | 9 cut(s) | 596, 1950, 2215, 2229, 2838, 2952, 3013, 3397, 3814 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2062 |
| Vha464I | CTTAAG | 1 cut(s) | 3029 |
| VspI | ATTAAT | 1 cut(s) | 3564 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3178 |
| XapI | RAATTY | 6 cut(s) | 1675, 1708, 2361, 2435, 2778, 3078 |
| XceI | RCATGY | 5 cut(s) | 1465, 1660, 2881, 3027, 3463 |
| XmiI | GTMKAC | 1 cut(s) | 2646 |
| XmnI | GAANNNNTTC | 6 cut(s) | 702, 1410, 1519, 1806, 2384, 3161 |
| XspI | CTAG | 7 cut(s) | 803, 1070, 1409, 1544, 1889, 2990, 3765 |
| ZraI | GACGTC | 1 cut(s) | 850 |
| ZrmI | AGTACT | 3 cut(s) | 603, 1293, 1797 |
| Zsp2I | ATGCAT | 4 cut(s) | 757, 993, 3240, 3465 |