Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002604.1

Orthogroup ID

OG0002682

Physical Location & Seq

Genomic Coordinates Forward (+)

75204 .. 75725

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002604.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgtacttcgacgattctcagtcgcacaacctccaaccctactacgaaccagaaccagaagaagatgaagattccggtgacaattacgcttcgccgccgacgacttgctcccagggccaccgctccagtctcgtcctccaaaccaagcaaggcggctccatctgcctcctctgcttctccaatctcatctcaaaccctcaatctcccaccgtccacgtgtcctacgctctctcccagctctcccaggccctctccgaccctcccttcctccgctccctcctcaccttccactctcacctcctcgtctccccgctcgtccaaaccctagcctccttcgacgacgaccccatcgcacgacaagtcgtggatctcgtctccggtctctgcgattccggcgatccctcactggctgctgagttcgtcgctcagctttccgatcgcctctcttccggcgccttggcttggagtcgccgtcaggtttacacggtaatactatccgattctccctttgtttttgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.87

Weight (kDa)

4.35

Isoelectric Point (pI)

78.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14180 AT4G14180
fragaria_vesca	FvH4_4g12860
malus_domestica	MD04G1022200.v1.1
prunus_persica	Prupe.1G172400_v2.0.a1 Prupe.1G176200_v2.0.a1
pyrus_communis	pycom04g01870
rosa_chinensis	RchiOBHm_Chr4g0412451 RchiOBHm_Chr4g0412511
rosa_laevigata	RLG00000008284 RLG00000008287 RLG00000008289 RLG00000008295 RLG00000008298
rosa_multiflora	Rmu_sc0002604.1_g000020 Rmu_sc0003914.1_g000006 Rmu_sc0005615.1_g000012
rosa_roxburghii	Rroxscaffold_161G00448090 Rroxscaffold_2G00117420 Rroxscaffold_4G00325160 Rroxscaffold_5G00356600 Rroxscaffold_5G00356610 Rroxscaffold_5G00356660 Rroxscaffold_5G00356680 Rroxscaffold_5G00356720 Rroxscaffold_7G00197050
rosa_rugosa	Rorug04G0103300 Rorug04G0103400 Rorug04G0103700.1
rosa_samantha	Rh4AG173200 Rh4AG173600 Rh4BG173100 Rh4CG184000 Rh4CG184500 Rh4DG167600 Rh4DG168300 Rh4DG168400 Rh4DG168900
rosa_wichuraiana	Rw4G014490 Rw4G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccBSI	CCGCTC	3 cut(s)	123, 273, 313
AciI	CCGC	5 cut(s)	95, 121, 153, 271, 311
AclWI	GGATC	2 cut(s)	375, 392
AcvI	CACGTG	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	462
AflIII	ACRYGT	1 cut(s)	216
AjnI	CCWGG	2 cut(s)	111, 243
AluBI	AGCT	2 cut(s)	238, 430
AluI	AGCT	2 cut(s)	238, 430
Alw26I	GTCTC	4 cut(s)	134, 310, 379, 386
AlwI	GGATC	2 cut(s)	375, 392
AoxI	GGCC	2 cut(s)	115, 246
ApeKI	GCWGC	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	115, 247
AsuHPI	GGTGA	3 cut(s)	89, 274, 287
BanI	GGYRCC	1 cut(s)	452
BbrPI	CACGTG	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	2 cut(s)	167, 356
BceAI	ACGGC	1 cut(s)	456
BciT130I	CCWGG	2 cut(s)	113, 245
BcoDI	GTCTC	4 cut(s)	134, 310, 379, 386
BfaI	CTAG	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	456
BisI	GCNGC	3 cut(s)	95, 154, 411
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	3 cut(s)	96, 155, 412
Bme1390I	CCNGG	2 cut(s)	113, 245
BmgT120I	GGNCC	2 cut(s)	115, 247
BmiI	GGNNCC	2 cut(s)	157, 454
BmrFI	CCNGG	2 cut(s)	113, 245
BpmI	CTGGAG	1 cut(s)	109
Bpu1102I	GCTNAGC	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	217
BsaHI	GRCGYC	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	4 cut(s)	111, 112, 243, 456
BsaWI	WCCGGW	2 cut(s)	74, 377
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 457, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse1I	ACTGG	2 cut(s)	126, 411
BseBI	CCWGG	2 cut(s)	113, 245
BseDI	CCNNGG	4 cut(s)	111, 112, 243, 456
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMII	CTCAG	3 cut(s)	32, 405, 440
BseNI	ACTGG	2 cut(s)	126, 411
BseRI	GAGGAG	3 cut(s)	158, 269, 290
BseXI	GCAGC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	2 cut(s)	117, 248
BshNI	GGYRCC	1 cut(s)	452
BsiEI	CGRYCG	1 cut(s)	439
BsiSI	CCGG	4 cut(s)	75, 378, 393, 450
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	4 cut(s)	134, 310, 379, 386
BsmBI	CGTCTC	2 cut(s)	310, 379
BsnI	GGCC	2 cut(s)	117, 248
Bso31I	GGTCTC	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	367, 397, 436
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	5 cut(s)	95, 121, 153, 271, 311
BspANI	GGCC	2 cut(s)	117, 248
BspCNI	CTCAG	3 cut(s)	31, 406, 439
BspLI	GGNNCC	2 cut(s)	157, 454
BspPI	GGATC	2 cut(s)	375, 392
BspT107I	GGYRCC	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	386
BsrBI	CCGCTC	3 cut(s)	123, 273, 313
BsrI	ACTGG	2 cut(s)	126, 411
BssECI	CCNNGG	4 cut(s)	111, 112, 243, 456
BssMI	GATC	3 cut(s)	367, 397, 436
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	113, 245
Bst4CI	ACNGT	2 cut(s)	211, 487
Bst6I	CTCTTC	1 cut(s)	451
BstACI	GRCGYC	1 cut(s)	453
BstBAI	YACGTR	1 cut(s)	217
BstDEI	CTNAG	4 cut(s)	18, 414, 426, 519
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	3 cut(s)	370, 400, 439
BstMAI	GTCTC	4 cut(s)	134, 310, 379, 386
BstMBI	GATC	3 cut(s)	367, 397, 436
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 162, 171, 393
BstNI	CCWGG	2 cut(s)	113, 245
BstSCI	CCNGG	2 cut(s)	111, 243
BstV1I	GCAGC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	117, 248
BtgZI	GCGATG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	404
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	115, 247
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	8 cut(s)	117, 156, 238, 248, 329, 410, 430, 461
CviKI_1	RGCY	8 cut(s)	117, 156, 238, 248, 329, 410, 430, 461
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	4 cut(s)	18, 414, 426, 519
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	3 cut(s)	369, 399, 438
DpnII	GATC	3 cut(s)	367, 397, 436
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	386
Eco72I	CACGTG	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	111, 243
EcoT14I	CCWWGG	1 cut(s)	456
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	456
Esp3I	CGTCTC	2 cut(s)	310, 379
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	95, 154, 411
Fsp4HI	GCNGC	3 cut(s)	95, 154, 411
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	3 cut(s)	95, 154, 411
GsaI	CCCAGC	1 cut(s)	238
GsuI	CTGGAG	1 cut(s)	109
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	117, 248
HapII	CCGG	4 cut(s)	75, 378, 393, 450
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	453
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HinfI	GANTC	5 cut(s)	14, 71, 389, 466, 500
HpaII	CCGG	4 cut(s)	75, 378, 393, 450
HphI	GGTGA	3 cut(s)	89, 274, 287
Hpy166II	GTNNAC	2 cut(s)	214, 481
Hpy188I	TCNGA	3 cut(s)	256, 436, 499
Hpy8I	GTNNAC	2 cut(s)	214, 481
Hpy99I	CGWCG	5 cut(s)	14, 103, 341, 344, 425
HpyAV	CCTTC	3 cut(s)	274, 295, 343
HpyCH4III	ACNGT	2 cut(s)	211, 487
HpyCH4IV	ACGT	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 162, 171, 393
HpyF3I	CTNAG	4 cut(s)	18, 414, 426, 519
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	453
HspAI	GCGC	1 cut(s)	453
KasI	GGCGCC	1 cut(s)	452
Kzo9I	GATC	3 cut(s)	367, 397, 436
LmnI	GCTCC	4 cut(s)	113, 128, 161, 278
Lsp1109I	GCAGC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	3 cut(s)	369, 399, 438
MbiI	CCGCTC	3 cut(s)	123, 273, 313
MboI	GATC	3 cut(s)	367, 397, 436
MboII	GAAGA	4 cut(s)	71, 74, 80, 438
MflI	RGATCY	1 cut(s)	367
MluCI	AATT	1 cut(s)	82
Mly113I	GGCGCC	1 cut(s)	453
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	2 cut(s)	58, 279
MspI	CCGG	4 cut(s)	75, 378, 393, 450
MspR9I	CCNGG	2 cut(s)	113, 245
MvaI	CCWGG	2 cut(s)	113, 245
MwoI	GCNNNNNNNGC	4 cut(s)	114, 162, 171, 393
NarI	GGCGCC	1 cut(s)	453
NdeII	GATC	3 cut(s)	367, 397, 436
NlaIV	GGNNCC	2 cut(s)	157, 454
NmuCI	GTSAC	1 cut(s)	77
PasI	CCCWGGG	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	2 cut(s)	98, 369
PfeI	GAWTC	4 cut(s)	14, 71, 389, 500
PkrI	GCNGC	3 cut(s)	96, 155, 412
Ple19I	CGATCG	1 cut(s)	439
PleI	GAGTC	1 cut(s)	474
PluTI	GGCGCC	1 cut(s)	456
PmaCI	CACGTG	1 cut(s)	217
PmlI	CACGTG	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	474
Ppu21I	YACGTR	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	111, 243
PspCI	CACGTG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	2 cut(s)	111, 243
PspN4I	GGNNCC	2 cut(s)	157, 454
PspPI	GGNCC	2 cut(s)	115, 247
PsuI	RGATCY	1 cut(s)	367
PvuI	CGATCG	1 cut(s)	439
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	3 cut(s)	95, 154, 411
Sau3AI	GATC	3 cut(s)	367, 397, 436
Sau96I	GGNCC	2 cut(s)	115, 247
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	2 cut(s)	113, 245
SetI	ASST	7 cut(s)	33, 219, 240, 287, 300, 432, 480
SfoI	GGCGCC	1 cut(s)	454
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	5 cut(s)	95, 121, 153, 271, 311
SspDI	GGCGCC	1 cut(s)	452
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	111, 243
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	211, 487
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	9, 336
TasI	AATT	1 cut(s)	82
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	2 cut(s)	97, 156
TfiI	GAWTC	4 cut(s)	14, 71, 389, 500
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	411
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.