Rroxscaffold_5G00356600

AtPRD1,PRD1

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
35884743 .. 35888583
3841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356600.1

Sequence Viewer

Length: 2124 bp
ATGAGTTCATCTGAAGGAGATAGCTTTGGGCAAGCAACAGAAGATGGAAAAGATATGCACCCTCTGAACATATTATTTACTGAGGCCATCAAAGGCCCACTTCTTTCAACAGACAGCCAAGTCCAGATCAGTACACTAGATTTACTCTTTCACTATATGTCTTGTGAAGGCACTTCATCCAGAGAAATCCAAGTACTAGTTGAAGAAAGCATTGCAGATTATGTGTTTGAAATACTGAGATTGTCAGAATGCAAGGATCCAGCTGTCAAATCTTGCCTTCAGGTACTTGATATTTTATCAAAAGCTGAGCAAGCTTTCAAACAGAGGCTTCTTGTTGGGTTTGCAATTCTGGTTCCAGTACTACATTATGTTGCTGAAGTTCCTTTCCATCCGGTTCAAAATCAAACTCTGAAGCTTATTTTGAACTGCATTTCTGATTGCCCTGGAATGCTATCCTCCTCTCATGTAGAGGAACTAGTTCCTGTTTTAACGAAGATGCTTAAACAACATACTGATGGGGATATGGGCATGCTTGAGGAGACATTTATAATGACCTGTTCAGTCCTTGTAGCTATCATAAGAACTCCATCTTTTCATGTGAGTTTGAATCTAGCACCATCAATTAAAGAAGCATTAGAATATGCTGTCTTAGGTTGTCTAAGTACATCCAACAAACGTCCTGGTCAACTTCTGCATTCCTTGTACCTACTTAAAGAGGCATACATGTATAGTCGTGAAGAAAATTCTACTCAATCCTCTAAAATAGAACTACGAAATTTGATTTTGAGTTTGTGTACAAAACATTTGTTGCCTTGGCTGGTAACCACCTTAAATGAAATGGAAGAGGAAACTATCCTCGGAGTACTGGAAACTGATTTTGAGTTTGTGTACAAAACATTTGTTGCCTTGGCTGGTAACCACCTAAATGAAATGGAAGAGGAAACTATCCTCGGAGTACTGGAAACTTTTCATTCGATACTGCTTCAGGATTCTGATAACCAAGCCAGAGAATTTGCAATGACACTACTTTCAAGCACTTGGTTCACGTTGTCATTTGGATGTCTAGGCTTATTCCCTACTGAGAAAATGAAGTGGAGGGTGTATCTGATGCTCAGTTCACTGGTGGATGTGCTTTTGGGAACTGATACTGGGCAACCCATTAGGGATGCTACTACATATCTGCCATCTGATCCCATTGATTTGCTTTTTCTACTTGGTCAAAGGAACACCCATAATTTGGAATTATCTTCTTGTCAATCTGCCATTTTGCTGATCTTATACATCAGTTCTTTACATGATGAAAGACTAGCGGACGATAAGATGGTTTTAGCCTCTCTGGAGCAATATATTTTGGTCAACAGTAGTGATCTCCAAAGTGGAGCCACTGATTCGTTCACAGTGATGATGCTTTTGCACATTGTTGTACCAGGGATTATGGACTGGAAAGTTTTCTTAGATCCAGGTAGGATGCAGTCATTTTCCTTTATTGGCATCTACTGCCATGACCTGTGCAGACTAATGCATTTTGGATCTCCTGTGGTCAAGCTTGCTGCTTCATACTGCCTGTTGGAGTTGTTTACCAGAATATCTGAGCAGAGGAATAGAACAGGGGAGGAGTTGCTATGTGCCACGAAGTACCTAAGTTCTGTAATGGCTGTATTAGAAGGCTTAGTTTTCTACAGTGACCTCAGAGTGGCTATGAATTGTGGCCTGTGCCTGTCAATGATCATGGGGTGGGAATTGCCGGACATGCATGAGACAAGTGTGGATGCAAAGAATACTTGGAGTAGGATGGTTGTGGAAGAGCTTGCAATGTCTTTAGCTGTCCCGTGCCTGGCATCAATATCTTTCATTAATCTTCACAAGCCTGCAATTCATGTTGCAGTTGCTCTGTTAAAACTGCAGAAGATACCTAAGTGGATGAGATCTGTATTTGATGATACTTGCATATCTAGCATAATTCAAAACCTTGCGGCTAATAATTTGAGCACAGAAATTGTCCTATTATTTCGAGCTCTATTGAACTCACAGTTCTTAAAGATGGAACAAATTGCTAGCTTAAATCAGTTGCTCCAGGTGACCATTCCTAACCATGCTCTTTCTGTTCTCTTACGTTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

707

Amino Acids

79.2

Weight (kDa)

5.03

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 548
AasI GACNNNNNNGTC 1 cut(s) 119
AccB7I CCANNNNNTGG 1 cut(s) 1237
AciI CCGC 2 cut(s) 1310, 1973
AclWI GGATC 5 cut(s) 251, 264, 1184, 1451, 1537
AcsI RAATTY 3 cut(s) 742, 775, 1010
AcuI CTGAAG 5 cut(s) 33, 263, 396, 431, 968
AfiI CCNNNNNNNGG 3 cut(s) 1237, 1693, 1834
AflIII ACRYGT 1 cut(s) 723
AhlI ACTAGT 2 cut(s) 196, 475
AjnI CCWGG 6 cut(s) 442, 679, 1426, 1459, 1833, 2073
Alw21I GWGCWC 2 cut(s) 1991, 2017
Alw26I GTCTC 2 cut(s) 533, 1751
AlwI GGATC 5 cut(s) 251, 264, 1184, 1451, 1537
AoxI GGCC 3 cut(s) 84, 94, 1708
ApeKI GCWGC 1 cut(s) 1550
ApoI RAATTY 3 cut(s) 742, 775, 1010
AseI ATTAAT 1 cut(s) 1854
Asp700I GAANNNNTTC 3 cut(s) 477, 966, 1448
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 2089
AsuNHI GCTAGC 1 cut(s) 2054
BaeI ACNNNNGTAYC 2 cut(s) 1901, 1934
BamHI GGATCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 2017
Bbv12I GWGCWC 2 cut(s) 1991, 2017
BbvI GCAGC 1 cut(s) 1537
BciT130I CCWGG 6 cut(s) 444, 681, 1428, 1461, 1835, 2075
BclI TGATCA 1 cut(s) 1725
BcoDI GTCTC 2 cut(s) 533, 1751
BcuI ACTAGT 2 cut(s) 196, 475
BfaI CTAG 8 cut(s) 137, 197, 476, 611, 1064, 1307, 1953, 2055
BfmI CTRYAG 2 cut(s) 1678, 1901
BglII AGATCT 1 cut(s) 1925
BisI GCNGC 2 cut(s) 1551, 1974
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 2 cut(s) 1552, 1975
BmcAI AGTACT 4 cut(s) 195, 360, 864, 957
Bme1390I CCNGG 6 cut(s) 444, 681, 1428, 1461, 1835, 2075
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 3 cut(s) 258, 354, 1381
BmrFI CCNGG 6 cut(s) 444, 681, 1428, 1461, 1835, 2075
BmrI ACTGGG 1 cut(s) 1158
BmsI GCATC 8 cut(s) 486, 1098, 1156, 1395, 1458, 1500, 1759, 1847
BmtI GCTAGC 1 cut(s) 2058
BmuI ACTGGG 1 cut(s) 1158
BpmI CTGGAG 2 cut(s) 1358, 2057
Bpu1102I GCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 554
BsaJI CCNNGG 6 cut(s) 442, 812, 856, 906, 949, 1427
BsaWI WCCGGW 1 cut(s) 391
Bsc4I CCNNNNNNNGG 3 cut(s) 1237, 1693, 1834
Bse1I ACTGG 6 cut(s) 356, 870, 963, 1125, 1153, 1445
Bse3DI GCAATG 3 cut(s) 210, 1023, 1818
BseBI CCWGG 6 cut(s) 444, 681, 1428, 1461, 1835, 2075
BseDI CCNNGG 6 cut(s) 442, 812, 856, 906, 949, 1427
BseLI CCNNNNNNNGG 3 cut(s) 1237, 1693, 1834
BseMI GCAATG 3 cut(s) 210, 1023, 1818
BseMII CTCAG 7 cut(s) 72, 227, 297, 1071, 1126, 1581, 1702
BseNI ACTGG 6 cut(s) 356, 870, 963, 1125, 1153, 1445
BseRI GAGGAG 3 cut(s) 448, 551, 1628
BseXI GCAGC 1 cut(s) 1537
BsgI GTGCAG 1 cut(s) 1531
BshFI GGCC 3 cut(s) 86, 96, 1710
BsiHKAI GWGCWC 2 cut(s) 1991, 2017
BsiSI CCGG 2 cut(s) 392, 1745
BslFI GGGAC 1 cut(s) 1811
BslI CCNNNNNNNGG 3 cut(s) 1237, 1693, 1834
BsmAI GTCTC 2 cut(s) 533, 1751
BsmFI GGGAC 1 cut(s) 1811
BsmI GAATGC 3 cut(s) 254, 453, 694
BsnI GGCC 3 cut(s) 86, 96, 1710
Bsp1286I GDGCHC 2 cut(s) 1991, 2017
Bsp1407I TGTACA 2 cut(s) 794, 888
Bsp143I GATC 9 cut(s) 126, 256, 1189, 1272, 1366, 1456, 1529, 1725, 1925
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 2 cut(s) 1310, 1973
BspANI GGCC 3 cut(s) 86, 96, 1710
BspCNI CTCAG 7 cut(s) 73, 228, 298, 1072, 1125, 1582, 1701
BspLI GGNNCC 3 cut(s) 258, 354, 1381
BspMAI CTGCAG 1 cut(s) 1905
BspOI GCTAGC 1 cut(s) 2058
BspPI GGATC 5 cut(s) 251, 264, 1184, 1451, 1537
BspQI GCTCTTC 1 cut(s) 1797
BsrDI GCAATG 3 cut(s) 210, 1023, 1818
BsrGI TGTACA 2 cut(s) 794, 888
BsrI ACTGG 6 cut(s) 356, 870, 963, 1125, 1153, 1445
BssECI CCNNGG 6 cut(s) 442, 812, 856, 906, 949, 1427
BssMI GATC 9 cut(s) 126, 256, 1189, 1272, 1366, 1456, 1529, 1725, 1925
BssT1I CCWWGG 2 cut(s) 812, 906
Bst2UI CCWGG 6 cut(s) 444, 681, 1428, 1461, 1835, 2075
Bst4CI ACNGT 4 cut(s) 1361, 1399, 1682, 2031
Bst6I CTCTTC 3 cut(s) 837, 930, 1797
BstAPI GCANNNNNTGC 1 cut(s) 1497
BstAUI TGTACA 2 cut(s) 794, 888
BstC8I GCNNGC 7 cut(s) 33, 312, 530, 1548, 1809, 1869, 2056
BstEII GGTNACC 3 cut(s) 820, 914, 2077
BstKTI GATC 9 cut(s) 129, 259, 1192, 1275, 1369, 1459, 1532, 1728, 1928
BstMAI GTCTC 2 cut(s) 533, 1751
BstMBI GATC 9 cut(s) 126, 256, 1189, 1272, 1366, 1456, 1529, 1725, 1925
BstMWI GCNNNNNNNGC 4 cut(s) 311, 1497, 1750, 1953
BstNI CCWGG 6 cut(s) 444, 681, 1428, 1461, 1835, 2075
BstNSI RCATGY 3 cut(s) 532, 727, 1753
BstPI GGTNACC 3 cut(s) 820, 914, 2077
BstSCI CCNGG 6 cut(s) 442, 679, 1426, 1459, 1833, 2073
BstSFI CTRYAG 2 cut(s) 1678, 1901
BstV1I GCAGC 1 cut(s) 1537
BstX2I RGATCY 4 cut(s) 256, 1456, 1529, 1925
BstYI RGATCY 4 cut(s) 256, 1456, 1529, 1925
BsuRI GGCC 3 cut(s) 86, 96, 1710
BtsIMutI CAGTG 4 cut(s) 1118, 1383, 1404, 1687
Cac8I GCNNGC 7 cut(s) 33, 312, 530, 1548, 1809, 1869, 2056
Cfr13I GGNCC 1 cut(s) 95
DpnI GATC 9 cut(s) 128, 258, 1191, 1274, 1368, 1458, 1531, 1727, 1927
DpnII GATC 9 cut(s) 126, 256, 1189, 1272, 1366, 1456, 1529, 1725, 1925
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
Eam1104I CTCTTC 3 cut(s) 837, 930, 1797
EarI CTCTTC 3 cut(s) 837, 930, 1797
Ecl136II GAGCTC 1 cut(s) 2015
Eco130I CCWWGG 2 cut(s) 812, 906
Eco24I GRGCYC 1 cut(s) 2017
Eco53kI GAGCTC 1 cut(s) 2015
Eco57I CTGAAG 5 cut(s) 33, 263, 396, 431, 968
Eco91I GGTNACC 3 cut(s) 820, 914, 2077
EcoICRI GAGCTC 1 cut(s) 2015
EcoO65I GGTNACC 3 cut(s) 820, 914, 2077
EcoRII CCWGG 6 cut(s) 442, 679, 1426, 1459, 1833, 2073
EcoT14I CCWWGG 2 cut(s) 812, 906
EcoT22I ATGCAT 2 cut(s) 1524, 1755
EcoT38I GRGCYC 1 cut(s) 2017
ErhI CCWWGG 2 cut(s) 812, 906
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 1 cut(s) 1811
FbaI TGATCA 1 cut(s) 1725
Fnu4HI GCNGC 2 cut(s) 1551, 1974
FriOI GRGCYC 1 cut(s) 2017
Fsp4HI GCNGC 2 cut(s) 1551, 1974
FspBI CTAG 8 cut(s) 137, 197, 476, 611, 1064, 1307, 1953, 2055
GluI GCNGC 2 cut(s) 1551, 1974
GsuI CTGGAG 2 cut(s) 1358, 2057
HaeIII GGCC 3 cut(s) 86, 96, 1710
HapII CCGG 2 cut(s) 392, 1745
HincII GTYRAC 2 cut(s) 686, 1357
HindII GTYRAC 2 cut(s) 686, 1357
HindIII AAGCTT 3 cut(s) 312, 413, 1544
HinfI GANTC 3 cut(s) 607, 989, 1388
HpaII CCGG 2 cut(s) 392, 1745
HphI GGTGA 1 cut(s) 2089
Hpy166II GTNNAC 9 cut(s) 134, 686, 795, 889, 1044, 1118, 1357, 1395, 1578
Hpy188III TCNNGA 5 cut(s) 124, 180, 734, 986, 1337
Hpy8I GTNNAC 9 cut(s) 134, 686, 795, 889, 1044, 1118, 1357, 1395, 1578
HpyAV CCTTC 4 cut(s) 8, 161, 287, 1658
HpyCH4III ACNGT 4 cut(s) 1361, 1399, 1682, 2031
HpyCH4IV ACGT 3 cut(s) 676, 1046, 2113
HpyF10VI GCNNNNNNNGC 4 cut(s) 311, 1497, 1750, 1953
HpySE526I ACGT 3 cut(s) 676, 1046, 2113
Ksp22I TGATCA 1 cut(s) 1725
Kzo9I GATC 9 cut(s) 126, 256, 1189, 1272, 1366, 1456, 1529, 1725, 1925
LguI GCTCTTC 1 cut(s) 1797
LmnI GCTCC 3 cut(s) 1339, 1379, 2076
Lsp1109I GCAGC 1 cut(s) 1537
LweI GCATC 8 cut(s) 486, 1098, 1156, 1395, 1458, 1500, 1759, 1847
MaeI CTAG 8 cut(s) 137, 197, 476, 611, 1064, 1307, 1953, 2055
MaeII ACGT 3 cut(s) 676, 1046, 2113
MaeIII GTNAC 4 cut(s) 820, 914, 1682, 2077
MalI GATC 9 cut(s) 128, 258, 1191, 1274, 1368, 1458, 1531, 1727, 1927
MboI GATC 9 cut(s) 126, 256, 1189, 1272, 1366, 1456, 1529, 1725, 1925
MflI RGATCY 4 cut(s) 256, 1456, 1529, 1925
MhlI GDGCHC 2 cut(s) 1991, 2017
MmeI TCCRAC 2 cut(s) 693, 1548
Mph1103I ATGCAT 2 cut(s) 1524, 1755
MroXI GAANNNNTTC 3 cut(s) 477, 966, 1448
MseI TTAA 9 cut(s) 488, 501, 624, 711, 830, 1854, 1895, 2036, 2060
MslI CAYNNNNRTG 4 cut(s) 513, 924, 1057, 1400
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 2 cut(s) 392, 1745
MspR9I CCNGG 6 cut(s) 444, 681, 1428, 1461, 1835, 2075
Mva1269I GAATGC 3 cut(s) 254, 453, 694
MvaI CCWGG 6 cut(s) 444, 681, 1428, 1461, 1835, 2075
MwoI GCNNNNNNNGC 4 cut(s) 311, 1497, 1750, 1953
NdeII GATC 9 cut(s) 126, 256, 1189, 1272, 1366, 1456, 1529, 1725, 1925
NheI GCTAGC 1 cut(s) 2054
NlaIV GGNNCC 3 cut(s) 258, 354, 1381
NmuCI GTSAC 2 cut(s) 1682, 2077
NsiI ATGCAT 2 cut(s) 1524, 1755
NspI RCATGY 3 cut(s) 532, 727, 1753
PaeI GCATGC 1 cut(s) 532
PciI ACATGT 1 cut(s) 723
PciSI GCTCTTC 1 cut(s) 1797
PctI GAATGC 3 cut(s) 254, 453, 694
PdmI GAANNNNTTC 3 cut(s) 477, 966, 1448
PfeI GAWTC 3 cut(s) 607, 989, 1388
PflMI CCANNNNNTGG 1 cut(s) 1237
PkrI GCNGC 2 cut(s) 1552, 1975
PscI ACATGT 1 cut(s) 723
PshBI ATTAAT 1 cut(s) 1854
PsiI TTATAA 1 cut(s) 548
Psp124BI GAGCTC 1 cut(s) 2017
Psp6I CCWGG 6 cut(s) 442, 679, 1426, 1459, 1833, 2073
PspEI GGTNACC 3 cut(s) 820, 914, 2077
PspGI CCWGG 6 cut(s) 442, 679, 1426, 1459, 1833, 2073
PspN4I GGNNCC 3 cut(s) 258, 354, 1381
PspPI GGNCC 1 cut(s) 95
PstI CTGCAG 1 cut(s) 1905
PsuI RGATCY 4 cut(s) 256, 1456, 1529, 1925
PvuII CAGCTG 1 cut(s) 263
RseI CAYNNNNRTG 4 cut(s) 513, 924, 1057, 1400
SacI GAGCTC 1 cut(s) 2017
SapI GCTCTTC 1 cut(s) 1797
SaqAI TTAA 9 cut(s) 488, 501, 624, 711, 830, 1854, 1895, 2036, 2060
SatI GCNGC 2 cut(s) 1551, 1974
Sau3AI GATC 9 cut(s) 126, 256, 1189, 1272, 1366, 1456, 1529, 1725, 1925
Sau96I GGNCC 1 cut(s) 95
ScaI AGTACT 4 cut(s) 195, 360, 864, 957
ScrFI CCNGG 6 cut(s) 444, 681, 1428, 1461, 1835, 2075
SduI GDGCHC 2 cut(s) 1991, 2017
SfaNI GCATC 8 cut(s) 486, 1098, 1156, 1395, 1458, 1500, 1759, 1847
SfcI CTRYAG 2 cut(s) 1678, 1901
SmiMI CAYNNNNRTG 4 cut(s) 513, 924, 1057, 1400
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
SpeI ACTAGT 2 cut(s) 196, 475
SphI GCATGC 1 cut(s) 532
SsiI CCGC 2 cut(s) 1310, 1973
SspMI CTAG 8 cut(s) 137, 197, 476, 611, 1064, 1307, 1953, 2055
SstI GAGCTC 1 cut(s) 2017
StyD4I CCNGG 6 cut(s) 442, 679, 1426, 1459, 1833, 2073
StyI CCWWGG 2 cut(s) 812, 906
TaaI ACNGT 4 cut(s) 1361, 1399, 1682, 2031
TaiI ACGT 3 cut(s) 679, 1049, 2116
TaqI TCGA 2 cut(s) 974, 2011
TatI WGTACW 8 cut(s) 131, 193, 358, 662, 794, 862, 888, 955
TauI GCSGC 1 cut(s) 1976
TfiI GAWTC 3 cut(s) 607, 989, 1388
Tru1I TTAA 9 cut(s) 488, 501, 624, 711, 830, 1854, 1895, 2036, 2060
Tru9I TTAA 9 cut(s) 488, 501, 624, 711, 830, 1854, 1895, 2036, 2060
TscAI CASTG 4 cut(s) 1125, 1390, 1404, 1687
TseFI GTSAC 2 cut(s) 1682, 2077
TseI GCWGC 1 cut(s) 1550
Tsp45I GTSAC 2 cut(s) 1682, 2077
TspRI CASTG 4 cut(s) 1125, 1390, 1404, 1687
Van91I CCANNNNNTGG 1 cut(s) 1237
VspI ATTAAT 1 cut(s) 1854
XapI RAATTY 3 cut(s) 742, 775, 1010
XceI RCATGY 3 cut(s) 532, 727, 1753
XmnI GAANNNNTTC 3 cut(s) 477, 966, 1448
XspI CTAG 8 cut(s) 137, 197, 476, 611, 1064, 1307, 1953, 2055
ZrmI AGTACT 4 cut(s) 195, 360, 864, 957
Zsp2I ATGCAT 2 cut(s) 1524, 1755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.