Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002682

Physical Location & Seq

Genomic Coordinates Forward (+)

14917128 .. 14919336

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G176200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGTTGGCTCAGAGAAGACTTTTCGGGGCTGCATATGCAGTTGATTTAAACAGCAATGGTTCATCCAAAGGCTTCTTTCCCACAGAAAAGATGAAATGGAGTGTGTATCAGATGCTCGGTTCACTAGTGTTCTTATGGGAAATGATTCTGGGCAACCTAATAGATACTACTCTATGTCTCCCATCTGATCCCATTGATTTTCTCATTCTACTTGAGCAAAAGAGCTCCCATAATTTAGAATTATCTTCTTGTCAATCTGCCCTTTCGCTGATTTCATACACAAGTTCTTTATATGATGAACGACTTGCAGATGATAAGTTGGTTTTAGCTTCTCTAGAGAAATATATTCTGTGGTTGTTTCAACAAGAGAAGCTCAGCACACCACTGTCATATCAGCTTCTGAAATTTAGTGGAAAGAATATAGCAAATGGCATCATTGTCCATGGAAAGAACAGTCATATGGTAAATGTTAATTTAATTGCAGAATTAATAGCAGGAGGAGATAATCATGGATCAACACTTTTAGTGTCCTTATTGACACAACTTCTTGAGAAAGGACATGAGAATGACATAATTTCTGTAGTGAATCTCGTGGCAACTATTATCAATATATTTCCAATTGCTTCCGACCAGTTATGCTTGCATGTGCTCATAGGACCTTCGAAAGCCATTATTTTCAGCACTTCCCTAGTCTCTACAATCAACAGCGCAATTCATGAAGCATGTCTAAAAGGACCAGCATTGGTTGACCACGATGAGGAAACAAGCTCTGGAGAAAAGGTTAGTTCCTCGTATTTCTTCTCTTTAAGAAGTTTGCACACTGTTTTACCAGGGATTGTGGACTGGAAAAATTTCTTTGATCCCGCAGATAGGGTACAGCCGATTTCCTTTTTCGGGATATTCTGCCATGACCTATGCACACTATACTGCCTTTTGGCGTTGTTTACCCGAATATCTGATCAGAGGAATAGAACAGGGGAGGAGTTGGTATGCACCATGGACTACCTAAGGTTTGTAATGGCTGTCCTAGAAGGCTTAATTTTCTCCAGTGACCTCAGTGGCTATGAATTGTGGCTTCTGCCTATCAATGATGGGACAAGTGTGACTACAAAGAATAATTGGAGTAGGATGATTGTGGAAGAGCTGGTGATGTCTTTAGCAGTCCCATGCTTAGCATCAAAATCTTTCATTAATCTTCACAAGCCTGCAATTCATGTAGCAGTCACATTGTTAAAGCGGCCGAAGGTTCCTGAGTGGATGAGATCGATGTTTGATGATTCTTGCATATCTGGCATCATTCAATACCTTGCGGCAAATAATTTGAGCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

444

Amino Acids

49.23

Weight (kDa)

5.54

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14180 AT4G14180
fragaria_vesca	FvH4_4g12860
malus_domestica	MD04G1022200.v1.1
prunus_persica	Prupe.1G172400_v2.0.a1 Prupe.1G176200_v2.0.a1
pyrus_communis	pycom04g01870
rosa_chinensis	RchiOBHm_Chr4g0412451 RchiOBHm_Chr4g0412511
rosa_laevigata	RLG00000008284 RLG00000008287 RLG00000008289 RLG00000008295 RLG00000008298
rosa_multiflora	Rmu_sc0002604.1_g000020 Rmu_sc0003914.1_g000006 Rmu_sc0005615.1_g000012
rosa_roxburghii	Rroxscaffold_161G00448090 Rroxscaffold_2G00117420 Rroxscaffold_4G00325160 Rroxscaffold_5G00356600 Rroxscaffold_5G00356610 Rroxscaffold_5G00356660 Rroxscaffold_5G00356680 Rroxscaffold_5G00356720 Rroxscaffold_7G00197050
rosa_rugosa	Rorug04G0103300 Rorug04G0103400 Rorug04G0103700.1
rosa_samantha	Rh4AG173200 Rh4AG173600 Rh4BG173100 Rh4CG184000 Rh4CG184500 Rh4DG167600 Rh4DG168300 Rh4DG168400 Rh4DG168900
rosa_wichuraiana	Rw4G014490 Rw4G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	864, 1237, 1310
AclWI	GGATC	3 cut(s)	182, 520, 854
AcoI	YGGCCR	1 cut(s)	1238
AcsI	RAATTY	2 cut(s)	404, 850
AfaI	GTAC	1 cut(s)	876
AfiI	CCNNNNNNNGG	3 cut(s)	757, 870, 894
AgsI	TTSAA	2 cut(s)	362, 1301
AhlI	ACTAGT	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	829
AluBI	AGCT	6 cut(s)	225, 329, 373, 397, 768, 1144
AluI	AGCT	6 cut(s)	225, 329, 373, 397, 768, 1144
Alw21I	GWGCWC	3 cut(s)	227, 651, 1328
Alw26I	GTCTC	2 cut(s)	182, 697
AlwI	GGATC	3 cut(s)	182, 520, 854
AlwNI	CAGNNNCTG	1 cut(s)	400
AoxI	GGCC	1 cut(s)	1238
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	404, 850
AseI	ATTAAT	2 cut(s)	488, 1191
Asp700I	GAANNNNTTC	2 cut(s)	144, 851
AspLEI	GCGC	1 cut(s)	710
AspS9I	GGNCC	2 cut(s)	656, 734
AsuHPI	GGTGA	1 cut(s)	1159
AsuII	TTCGAA	1 cut(s)	662
AvaII	GGWCC	2 cut(s)	656, 734
AxyI	CCTNAGG	1 cut(s)	1007
BanII	GRGCYC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	3 cut(s)	227, 651, 1328
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	190, 1085
BciT130I	CCWGG	1 cut(s)	831
BclI	TGATCA	1 cut(s)	958
BcoDI	GTCTC	2 cut(s)	182, 697
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	4 cut(s)	125, 335, 689, 1028
BfmI	CTRYAG	1 cut(s)	579
BisI	GCNGC	3 cut(s)	30, 1238, 1311
BlpI	GCTNAGC	2 cut(s)	374, 1171
BlsI	GCNGC	3 cut(s)	31, 1239, 1312
Bme1390I	CCNGG	1 cut(s)	831
Bme18I	GGWCC	2 cut(s)	656, 734
BmgT120I	GGNCC	2 cut(s)	656, 734
BmiI	GGNNCC	1 cut(s)	1248
BmrFI	CCNGG	1 cut(s)	831
BmsI	GCATC	4 cut(s)	102, 441, 1184, 1302
BpiI	GAAGAC	1 cut(s)	22
BpmI	CTGGAG	2 cut(s)	792, 1030
Bpu1102I	GCTNAGC	2 cut(s)	374, 1171
Bpu14I	TTCGAA	1 cut(s)	662
BpuEI	CTTGAG	2 cut(s)	233, 569
Bsa29I	ATCGAT	1 cut(s)	1265
BsaJI	CCNNGG	3 cut(s)	442, 830, 996
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	757, 870, 894
Bse1I	ACTGG	3 cut(s)	631, 848, 1047
Bse21I	CCTNAGG	1 cut(s)	1007
Bse3DI	GCAATG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	831
BseCI	ATCGAT	1 cut(s)	1265
BseDI	CCNNGG	3 cut(s)	442, 830, 996
BseGI	GGATG	3 cut(s)	62, 1134, 1263
BseLI	CCNNNNNNNGG	3 cut(s)	757, 870, 894
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	4 cut(s)	23, 388, 1069, 1242
BseNI	ACTGG	3 cut(s)	631, 848, 1047
BseRI	GAGGAG	2 cut(s)	513, 995
BseX3I	CGGCCG	1 cut(s)	1238
BseXI	GCAGC	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	1241
BshFI	GGCC	1 cut(s)	1240
BshVI	ATCGAT	1 cut(s)	1265
BsiEI	CGRYCG	1 cut(s)	1241
BsiHKAI	GWGCWC	3 cut(s)	227, 651, 1328
BslFI	GGGAC	2 cut(s)	1108, 1148
BslI	CCNNNNNNNGG	3 cut(s)	757, 870, 894
BsmAI	GTCTC	2 cut(s)	182, 697
BsmFI	GGGAC	2 cut(s)	1108, 1148
BsnI	GGCC	1 cut(s)	1240
Bsp119I	TTCGAA	1 cut(s)	662
Bsp1286I	GDGCHC	3 cut(s)	227, 651, 1328
Bsp143I	GATC	5 cut(s)	187, 512, 859, 958, 1262
Bsp1720I	GCTNAGC	2 cut(s)	374, 1171
Bsp19I	CCATGG	2 cut(s)	442, 996
BspACI	CCGC	3 cut(s)	864, 1237, 1310
BspANI	GGCC	1 cut(s)	1240
BspCNI	CTCAG	4 cut(s)	22, 387, 1068, 1243
BspDI	ATCGAT	1 cut(s)	1265
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	1248
BspPI	GGATC	3 cut(s)	182, 520, 854
BspQI	GCTCTTC	1 cut(s)	1134
BspT104I	TTCGAA	1 cut(s)	662
BsrDI	GCAATG	1 cut(s)	61
BsrI	ACTGG	3 cut(s)	631, 848, 1047
BssECI	CCNNGG	3 cut(s)	442, 830, 996
BssMI	GATC	5 cut(s)	187, 512, 859, 958, 1262
BssSI	CACGAG	1 cut(s)	590
BssT1I	CCWWGG	2 cut(s)	442, 996
Bst2BI	CACGAG	1 cut(s)	590
Bst2UI	CCWGG	1 cut(s)	831
Bst4CI	ACNGT	3 cut(s)	387, 455, 823
Bst6I	CTCTTC	1 cut(s)	1134
BstBI	TTCGAA	1 cut(s)	662
BstC8I	GCNNGC	2 cut(s)	641, 1206
BstDEI	CTNAG	6 cut(s)	9, 374, 1007, 1055, 1171, 1251
BstDSI	CCRYGG	2 cut(s)	442, 996
BstF5I	GGATG	3 cut(s)	62, 1134, 1263
BstHHI	GCGC	1 cut(s)	710
BstKTI	GATC	5 cut(s)	190, 515, 862, 961, 1265
BstMAI	GTCTC	2 cut(s)	182, 697
BstMBI	GATC	5 cut(s)	187, 512, 859, 958, 1262
BstMCI	CGRYCG	1 cut(s)	1241
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 1290
BstNI	CCWGG	1 cut(s)	831
BstNSI	RCATGY	2 cut(s)	647, 726
BstSCI	CCNGG	1 cut(s)	829
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	22
BstZI	CGGCCG	1 cut(s)	1238
Bsu15I	ATCGAT	1 cut(s)	1265
Bsu36I	CCTNAGG	1 cut(s)	1007
BsuRI	GGCC	1 cut(s)	1240
BsuTUI	ATCGAT	1 cut(s)	1265
BtgI	CCRYGG	2 cut(s)	442, 996
BtsCI	GGATG	3 cut(s)	62, 1134, 1263
BtsIMutI	CAGTG	4 cut(s)	383, 819, 1054, 1063
Cac8I	GCNNGC	2 cut(s)	641, 1206
CaiI	CAGNNNCTG	1 cut(s)	400
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	1 cut(s)	710
Cfr13I	GGNCC	2 cut(s)	656, 734
ClaI	ATCGAT	1 cut(s)	1265
Csp6I	GTAC	1 cut(s)	875
CviQI	GTAC	1 cut(s)	875
DdeI	CTNAG	6 cut(s)	9, 374, 1007, 1055, 1171, 1251
DpnI	GATC	5 cut(s)	189, 514, 861, 960, 1264
DpnII	GATC	5 cut(s)	187, 512, 859, 958, 1262
DraI	TTTAAA	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	1238
EagI	CGGCCG	1 cut(s)	1238
Eam1104I	CTCTTC	1 cut(s)	1134
EarI	CTCTTC	1 cut(s)	1134
Ecl136II	GAGCTC	1 cut(s)	225
EclXI	CGGCCG	1 cut(s)	1238
Eco130I	CCWWGG	2 cut(s)	442, 996
Eco24I	GRGCYC	1 cut(s)	227
Eco47I	GGWCC	2 cut(s)	656, 734
Eco52I	CGGCCG	1 cut(s)	1238
Eco53kI	GAGCTC	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	1007
EcoICRI	GAGCTC	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	829
EcoT14I	CCWWGG	2 cut(s)	442, 996
EcoT38I	GRGCYC	1 cut(s)	227
ErhI	CCWWGG	2 cut(s)	442, 996
FaqI	GGGAC	2 cut(s)	1108, 1148
FauI	CCCGC	1 cut(s)	871
FauNDI	CATATG	2 cut(s)	34, 459
FbaI	TGATCA	1 cut(s)	958
Fnu4HI	GCNGC	3 cut(s)	30, 1238, 1311
FokI	GGATG	3 cut(s)	49, 1141, 1270
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	3 cut(s)	30, 1238, 1311
FspBI	CTAG	4 cut(s)	125, 335, 689, 1028
GlaI	GCGC	1 cut(s)	709
GluI	GCNGC	3 cut(s)	30, 1238, 1311
GsuI	CTGGAG	2 cut(s)	792, 1030
HaeIII	GGCC	1 cut(s)	1240
HhaI	GCGC	1 cut(s)	710
Hin6I	GCGC	1 cut(s)	708
HinP1I	GCGC	1 cut(s)	708
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HinfI	GANTC	3 cut(s)	145, 586, 1277
HphI	GGTGA	1 cut(s)	1159
Hpy166II	GTNNAC	4 cut(s)	122, 748, 841, 945
Hpy188I	TCNGA	7 cut(s)	12, 111, 187, 402, 628, 958, 963
Hpy188III	TCNNGA	6 cut(s)	335, 548, 716, 771, 895, 1250
Hpy8I	GTNNAC	4 cut(s)	122, 748, 841, 945
HpyAV	CCTTC	3 cut(s)	669, 1025, 1237
HpyCH4III	ACNGT	3 cut(s)	387, 455, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 1290
HpyF3I	CTNAG	6 cut(s)	9, 374, 1007, 1055, 1171, 1251
HspAI	GCGC	1 cut(s)	708
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	5 cut(s)	187, 512, 859, 958, 1262
LguI	GCTCTTC	1 cut(s)	1134
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	4 cut(s)	102, 441, 1184, 1302
MaeI	CTAG	4 cut(s)	125, 335, 689, 1028
MaeIII	GTNAC	3 cut(s)	1049, 1102, 1222
MalI	GATC	5 cut(s)	189, 514, 861, 960, 1264
MboI	GATC	5 cut(s)	187, 512, 859, 958, 1262
MboII	GAAGA	5 cut(s)	27, 237, 790, 1151, 1187
MfeI	CAATTG	1 cut(s)	618
MhlI	GDGCHC	3 cut(s)	227, 651, 1328
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	6 cut(s)	491, 751, 799, 957, 973, 1064
MroXI	GAANNNNTTC	2 cut(s)	144, 851
MseI	TTAA	8 cut(s)	47, 471, 476, 488, 806, 1037, 1191, 1232
MslI	CAYNNNNRTG	1 cut(s)	564
MspR9I	CCNGG	1 cut(s)	831
MunI	CAATTG	1 cut(s)	618
MvaI	CCWGG	1 cut(s)	831
MwoI	GCNNNNNNNGC	2 cut(s)	35, 1290
NcoI	CCATGG	2 cut(s)	442, 996
NdeI	CATATG	2 cut(s)	34, 459
NdeII	GATC	5 cut(s)	187, 512, 859, 958, 1262
NlaIV	GGNNCC	1 cut(s)	1248
NmuCI	GTSAC	3 cut(s)	1049, 1102, 1222
NspI	RCATGY	2 cut(s)	647, 726
NspV	TTCGAA	1 cut(s)	662
PagI	TCATGA	1 cut(s)	715
PciSI	GCTCTTC	1 cut(s)	1134
PdmI	GAANNNNTTC	2 cut(s)	144, 851
PfeI	GAWTC	3 cut(s)	145, 586, 1277
PkrI	GCNGC	3 cut(s)	31, 1239, 1312
PpuMI	RGGWCCY	1 cut(s)	656
PshBI	ATTAAT	2 cut(s)	488, 1191
Psp124BI	GAGCTC	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	829
PspN4I	GGNNCC	1 cut(s)	1248
PspPI	GGNCC	2 cut(s)	656, 734
PspPPI	RGGWCCY	1 cut(s)	656
PstNI	CAGNNNCTG	1 cut(s)	400
RsaI	GTAC	1 cut(s)	876
RsaNI	GTAC	1 cut(s)	875
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	1134
SaqAI	TTAA	8 cut(s)	47, 471, 476, 488, 806, 1037, 1191, 1232
SatI	GCNGC	3 cut(s)	30, 1238, 1311
Sau3AI	GATC	5 cut(s)	187, 512, 859, 958, 1262
Sau96I	GGNCC	2 cut(s)	656, 734
ScrFI	CCNGG	1 cut(s)	831
SduI	GDGCHC	3 cut(s)	227, 651, 1328
SfaNI	GCATC	4 cut(s)	102, 441, 1184, 1302
SfcI	CTRYAG	1 cut(s)	579
SfuI	TTCGAA	1 cut(s)	662
SinI	GGWCC	2 cut(s)	656, 734
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	2 cut(s)	212, 548
SmoI	CTYRAG	2 cut(s)	212, 548
SpeI	ACTAGT	1 cut(s)	124
SsiI	CCGC	3 cut(s)	864, 1237, 1310
SspMI	CTAG	4 cut(s)	125, 335, 689, 1028
SstI	GAGCTC	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	829
StyI	CCWWGG	2 cut(s)	442, 996
TaaI	ACNGT	3 cut(s)	387, 455, 823
TaqI	TCGA	2 cut(s)	662, 1265
TauI	GCSGC	2 cut(s)	1240, 1313
TfiI	GAWTC	3 cut(s)	145, 586, 1277
Tru1I	TTAA	8 cut(s)	47, 471, 476, 488, 806, 1037, 1191, 1232
Tru9I	TTAA	8 cut(s)	47, 471, 476, 488, 806, 1037, 1191, 1232
TscAI	CASTG	4 cut(s)	390, 826, 1054, 1063
TseFI	GTSAC	3 cut(s)	1049, 1102, 1222
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	3 cut(s)	1049, 1102, 1222
TspDTI	ATGAA	9 cut(s)	51, 107, 264, 312, 704, 732, 1080, 1177, 1202
TspRI	CASTG	4 cut(s)	390, 826, 1054, 1063
VpaK11BI	GGWCC	2 cut(s)	656, 734
VspI	ATTAAT	2 cut(s)	488, 1191
XapI	RAATTY	2 cut(s)	404, 850
XbaI	TCTAGA	1 cut(s)	334
XceI	RCATGY	2 cut(s)	647, 726
XmnI	GAANNNNTTC	2 cut(s)	144, 851
XspI	CTAG	4 cut(s)	125, 335, 689, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.