AtPRD1,PRD1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14180 AT4G14180 |
| fragaria_vesca | FvH4_4g12860 |
| malus_domestica | MD04G1022200.v1.1 |
| prunus_persica | Prupe.1G172400_v2.0.a1 Prupe.1G176200_v2.0.a1 |
| pyrus_communis | pycom04g01870 |
| rosa_chinensis | RchiOBHm_Chr4g0412451 RchiOBHm_Chr4g0412511 |
| rosa_laevigata | RLG00000008284 RLG00000008287 RLG00000008289 RLG00000008295 RLG00000008298 |
| rosa_multiflora | Rmu_sc0002604.1_g000020 Rmu_sc0003914.1_g000006 Rmu_sc0005615.1_g000012 |
| rosa_roxburghii | Rroxscaffold_161G00448090 Rroxscaffold_2G00117420 Rroxscaffold_4G00325160 Rroxscaffold_5G00356600 Rroxscaffold_5G00356610 Rroxscaffold_5G00356660 Rroxscaffold_5G00356680 Rroxscaffold_5G00356720 Rroxscaffold_7G00197050 |
| rosa_rugosa | Rorug04G0103300 Rorug04G0103400 Rorug04G0103700.1 |
| rosa_samantha | Rh4AG173200 Rh4AG173600 Rh4BG173100 Rh4CG184000 Rh4CG184500 Rh4DG167600 Rh4DG168300 Rh4DG168400 Rh4DG168900 |
| rosa_wichuraiana | Rw4G014490 Rw4G014550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1022, 2462 |
| Acc36I | ACCTGC | 2 cut(s) | 572, 1466 |
| AccB1I | GGYRCC | 2 cut(s) | 401, 2941 |
| AccBSI | CCGCTC | 2 cut(s) | 383, 1496 |
| AccI | GTMKAC | 1 cut(s) | 3917 |
| AccII | CGCG | 2 cut(s) | 1961, 2864 |
| AclI | AACGTT | 1 cut(s) | 1520 |
| AcoI | YGGCCR | 3 cut(s) | 396, 1275, 3173 |
| AcsI | RAATTY | 6 cut(s) | 907, 1504, 1648, 2332, 2349, 2423 |
| AcuI | CTGAAG | 2 cut(s) | 1062, 1781 |
| AcvI | CACGTG | 1 cut(s) | 220 |
| AcyI | GRCGYC | 2 cut(s) | 402, 3908 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 465, 1351, 1615, 1819, 2050, 2191, 3043, 3394, 3742 |
| AflII | CTTAAG | 2 cut(s) | 1613, 3737 |
| AflIII | ACRYGT | 4 cut(s) | 219, 1059, 1583, 2862 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 19, 365 |
| AhlI | ACTAGT | 1 cut(s) | 1933 |
| AjnI | CCWGG | 8 cut(s) | 464, 1064, 1836, 2937, 3124, 3774, 3861, 3934 |
| Alw21I | GWGCWC | 5 cut(s) | 775, 2857, 2937, 3056, 3692 |
| Alw26I | GTCTC | 7 cut(s) | 313, 377, 726, 1997, 2303, 2885, 3041 |
| Alw44I | GTGCAC | 1 cut(s) | 771 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2419 |
| Ama87I | CYCGRG | 2 cut(s) | 2573, 3529 |
| ApaLI | GTGCAC | 1 cut(s) | 771 |
| ApeKI | GCWGC | 3 cut(s) | 1817, 2537, 3005 |
| ApoI | RAATTY | 6 cut(s) | 907, 1504, 1648, 2332, 2349, 2423 |
| AseI | ATTAAT | 1 cut(s) | 3555 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1779, 2791, 3146 |
| AspLEI | GCGC | 1 cut(s) | 404 |
| AspS9I | GGNCC | 6 cut(s) | 118, 730, 998, 2193, 2399, 3020 |
| AsuC2I | CCSGG | 2 cut(s) | 611, 1347 |
| AsuHPI | GGTGA | 3 cut(s) | 277, 683, 2715 |
| AsuNHI | GCTAGC | 1 cut(s) | 3755 |
| AvaI | CYCGRG | 2 cut(s) | 2573, 3529 |
| AvaII | GGWCC | 1 cut(s) | 3020 |
| BaeGI | GKGCMC | 1 cut(s) | 775 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1127, 1160 |
| BamHI | GGATCC | 2 cut(s) | 1159, 3931 |
| BanI | GGYRCC | 2 cut(s) | 401, 2941 |
| BanII | GRGCYC | 2 cut(s) | 2857, 3056 |
| BauI | CACGAG | 1 cut(s) | 2585 |
| BbrPI | CACGTG | 1 cut(s) | 220 |
| BbsI | GAAGAC | 1 cut(s) | 578 |
| Bbv12I | GWGCWC | 5 cut(s) | 775, 2857, 2937, 3056, 3692 |
| BbvI | GCAGC | 3 cut(s) | 1829, 2549, 3017 |
| BceAI | ACGGC | 5 cut(s) | 79, 459, 3369, 3509, 3617 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3478, 3512, 3528, 3562 |
| BciT130I | CCWGG | 8 cut(s) | 466, 1066, 1838, 2939, 3126, 3776, 3863, 3936 |
| BciVI | GTATCC | 2 cut(s) | 1366, 1747 |
| BcnI | CCSGG | 2 cut(s) | 611, 1347 |
| BcoDI | GTCTC | 7 cut(s) | 313, 377, 726, 1997, 2303, 2885, 3041 |
| BcuI | ACTAGT | 1 cut(s) | 1933 |
| BfaI | CTAG | 6 cut(s) | 429, 1379, 1934, 2625, 3756, 3923 |
| BfmI | CTRYAG | 3 cut(s) | 1890, 3211, 3654 |
| BfoI | RGCGCY | 1 cut(s) | 405 |
| BfrI | CTTAAG | 2 cut(s) | 1613, 3737 |
| BfuAI | ACCTGC | 2 cut(s) | 572, 1466 |
| BfuI | GTATCC | 2 cut(s) | 1366, 1747 |
| BisI | GCNGC | 9 cut(s) | 92, 1818, 1983, 2538, 2742, 3006, 3173, 3802, 3852 |
| BlpI | GCTNAGC | 2 cut(s) | 1209, 3535 |
| BlsI | GCNGC | 9 cut(s) | 93, 1819, 1984, 2539, 2743, 3007, 3174, 3803, 3853 |
| BmcAI | AGTACT | 3 cut(s) | 1263, 1770, 2968 |
| Bme18I | GGWCC | 1 cut(s) | 3020 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 19, 365 |
| BmeT110I | CYCGRG | 2 cut(s) | 2573, 3529 |
| BmgT120I | GGNCC | 6 cut(s) | 118, 730, 998, 2193, 2399, 3020 |
| BmiI | GGNNCC | 7 cut(s) | 403, 457, 1161, 2943, 3021, 3612, 3933 |
| BmsI | GCATC | 7 cut(s) | 668, 1389, 1862, 1969, 2637, 2904, 3548 |
| BmtI | GCTAGC | 1 cut(s) | 3759 |
| BpiI | GAAGAC | 1 cut(s) | 578 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3038, 3070 |
| BpmI | CTGGAG | 9 cut(s) | 487, 746, 2171, 2672, 2841, 3078, 3144, 3505, 3758 |
| Bpu10I | CCTNAGC | 1 cut(s) | 499 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1209, 3535 |
| BpuMI | CCSGG | 2 cut(s) | 611, 1347 |
| BsaAI | YACGTR | 1 cut(s) | 220 |
| BsaBI | GATNNNNATC | 2 cut(s) | 960, 3930 |
| BsaHI | GRCGYC | 2 cut(s) | 402, 3908 |
| BsaWI | WCCGGW | 1 cut(s) | 452 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 176, 206, 314, 344, 460, 490 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 465, 1351, 1615, 1819, 2050, 2191, 3043, 3394, 3742 |
| Bse118I | RCCGGY | 2 cut(s) | 398, 3022 |
| Bse1I | ACTGG | 7 cut(s) | 1170, 1259, 1776, 2097, 2656, 3143, 3488 |
| Bse3DI | GCAATG | 5 cut(s) | 775, 1113, 1542, 3519, 3590 |
| Bse8I | GATNNNNATC | 2 cut(s) | 960, 3930 |
| BseBI | CCWGG | 8 cut(s) | 466, 1066, 1838, 2939, 3126, 3776, 3863, 3936 |
| BseJI | GATNNNNATC | 2 cut(s) | 960, 3930 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 465, 1351, 1615, 1819, 2050, 2191, 3043, 3394, 3742 |
| BseMI | GCAATG | 5 cut(s) | 775, 1113, 1542, 3519, 3590 |
| BseNI | ACTGG | 7 cut(s) | 1170, 1259, 1776, 2097, 2656, 3143, 3488 |
| BseRI | GAGGAG | 5 cut(s) | 272, 322, 1351, 2538, 3059 |
| BseSI | GKGCMC | 1 cut(s) | 775 |
| BseX3I | CGGCCG | 1 cut(s) | 3173 |
| BseXI | GCAGC | 3 cut(s) | 1829, 2549, 3017 |
| BsgI | GTGCAG | 1 cut(s) | 3802 |
| Bsh1236I | CGCG | 2 cut(s) | 1961, 2864 |
| Bsh1285I | CGRYCG | 3 cut(s) | 442, 3176, 3858 |
| BshNI | GGYRCC | 2 cut(s) | 401, 2941 |
| BsiEI | CGRYCG | 3 cut(s) | 442, 3176, 3858 |
| BsiHKAI | GWGCWC | 5 cut(s) | 775, 2857, 2937, 3056, 3692 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2573, 3529 |
| BsiSI | CCGG | 6 cut(s) | 399, 453, 610, 1347, 2520, 3023 |
| BslFI | GGGAC | 5 cut(s) | 563, 889, 3033, 3472, 3512 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 465, 1351, 1615, 1819, 2050, 2191, 3043, 3394, 3742 |
| BsmAI | GTCTC | 7 cut(s) | 313, 377, 726, 1997, 2303, 2885, 3041 |
| BsmBI | CGTCTC | 4 cut(s) | 313, 377, 2303, 3041 |
| BsmFI | GGGAC | 5 cut(s) | 563, 889, 3033, 3472, 3512 |
| BsmI | GAATGC | 4 cut(s) | 1157, 1411, 1597, 3456 |
| BsoBI | CYCGRG | 2 cut(s) | 2573, 3529 |
| Bsp1286I | GDGCHC | 5 cut(s) | 775, 2857, 2937, 3056, 3692 |
| Bsp1407I | TGTACA | 3 cut(s) | 1632, 1700, 2776 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1209, 3535 |
| Bsp19I | CCATGG | 2 cut(s) | 2467, 2782 |
| BspFNI | CGCG | 2 cut(s) | 1961, 2864 |
| BspHI | TCATGA | 2 cut(s) | 735, 2872 |
| BspLI | GGNNCC | 7 cut(s) | 403, 457, 1161, 2943, 3021, 3612, 3933 |
| BspMAI | CTGCAG | 2 cut(s) | 3215, 3658 |
| BspMI | ACCTGC | 2 cut(s) | 572, 1466 |
| BspOI | GCTAGC | 1 cut(s) | 3759 |
| BspQI | GCTCTTC | 1 cut(s) | 3498 |
| BspT107I | GGYRCC | 2 cut(s) | 401, 2941 |
| BspTI | CTTAAG | 2 cut(s) | 1613, 3737 |
| BsrBI | CCGCTC | 2 cut(s) | 383, 1496 |
| BsrDI | GCAATG | 5 cut(s) | 775, 1113, 1542, 3519, 3590 |
| BsrFI | RCCGGY | 2 cut(s) | 398, 3022 |
| BsrGI | TGTACA | 3 cut(s) | 1632, 1700, 2776 |
| BsrI | ACTGG | 7 cut(s) | 1170, 1259, 1776, 2097, 2656, 3143, 3488 |
| BssAI | RCCGGY | 2 cut(s) | 398, 3022 |
| BssNI | GRCGYC | 2 cut(s) | 402, 3908 |
| BssSI | CACGAG | 1 cut(s) | 2585 |
| BssT1I | CCWWGG | 7 cut(s) | 1718, 1762, 1876, 2185, 2256, 2467, 2782 |
| Bst2BI | CACGAG | 1 cut(s) | 2585 |
| Bst2UI | CCWGG | 8 cut(s) | 466, 1066, 1838, 2939, 3126, 3776, 3863, 3936 |
| Bst6I | CTCTTC | 5 cut(s) | 454, 597, 2379, 3498, 3822 |
| BstACI | GRCGYC | 2 cut(s) | 402, 3908 |
| BstAFI | CTTAAG | 2 cut(s) | 1613, 3737 |
| BstAUI | TGTACA | 3 cut(s) | 1632, 1700, 2776 |
| BstBAI | YACGTR | 1 cut(s) | 220 |
| BstDSI | CCRYGG | 2 cut(s) | 2467, 2782 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1613 |
| BstFNI | CGCG | 2 cut(s) | 1961, 2864 |
| BstH2I | RGCGCY | 1 cut(s) | 405 |
| BstHHI | GCGC | 1 cut(s) | 404 |
| BstMAI | GTCTC | 7 cut(s) | 313, 377, 726, 1997, 2303, 2885, 3041 |
| BstMCI | CGRYCG | 3 cut(s) | 442, 3176, 3858 |
| BstNI | CCWGG | 8 cut(s) | 466, 1066, 1838, 2939, 3126, 3776, 3863, 3936 |
| BstNSI | RCATGY | 3 cut(s) | 111, 1063, 1587 |
| BstSFI | CTRYAG | 3 cut(s) | 1890, 3211, 3654 |
| BstSLI | GKGCMC | 1 cut(s) | 775 |
| BstUI | CGCG | 2 cut(s) | 1961, 2864 |
| BstV1I | GCAGC | 3 cut(s) | 1829, 2549, 3017 |
| BstV2I | GAAGAC | 1 cut(s) | 578 |
| BstX2I | RGATCY | 6 cut(s) | 125, 606, 1159, 2200, 3230, 3931 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2865 |
| BstYI | RGATCY | 6 cut(s) | 125, 606, 1159, 2200, 3230, 3931 |
| BstZI | CGGCCG | 1 cut(s) | 3173 |
| BsuI | GTATCC | 2 cut(s) | 1366, 1747 |
| BtgI | CCRYGG | 2 cut(s) | 2467, 2782 |
| BtgZI | GCGATG | 1 cut(s) | 337 |
| BtsI | GCAGTG | 2 cut(s) | 493, 2823 |
| BtsIMutI | CAGTG | 8 cut(s) | 493, 855, 1163, 1470, 1545, 2823, 3114, 3381 |
| BveI | ACCTGC | 2 cut(s) | 572, 1466 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2419 |
| CciI | TCATGA | 2 cut(s) | 735, 2872 |
| CfoI | GCGC | 1 cut(s) | 404 |
| Cfr10I | RCCGGY | 2 cut(s) | 398, 3022 |
| Cfr13I | GGNCC | 6 cut(s) | 118, 730, 998, 2193, 2399, 3020 |
| CseI | GACGC | 3 cut(s) | 1967, 2870, 3897 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 136, 171 |
| DinI | GGCGCC | 1 cut(s) | 403 |
| DraI | TTTAAA | 1 cut(s) | 3991 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1022, 2462 |
| DriI | GACNNNNNGTC | 2 cut(s) | 19, 365 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1022, 2462 |
| EaeI | YGGCCR | 3 cut(s) | 396, 1275, 3173 |
| EagI | CGGCCG | 1 cut(s) | 3173 |
| Eam1104I | CTCTTC | 5 cut(s) | 454, 597, 2379, 3498, 3822 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 19, 365 |
| EarI | CTCTTC | 5 cut(s) | 454, 597, 2379, 3498, 3822 |
| Ecl136II | GAGCTC | 2 cut(s) | 2855, 3054 |
| EclXI | CGGCCG | 1 cut(s) | 3173 |
| Eco130I | CCWWGG | 7 cut(s) | 1718, 1762, 1876, 2185, 2256, 2467, 2782 |
| Eco147I | AGGCCT | 1 cut(s) | 3369 |
| Eco24I | GRGCYC | 2 cut(s) | 2857, 3056 |
| Eco47I | GGWCC | 1 cut(s) | 3020 |
| Eco52I | CGGCCG | 1 cut(s) | 3173 |
| Eco53kI | GAGCTC | 2 cut(s) | 2855, 3054 |
| Eco57I | CTGAAG | 2 cut(s) | 1062, 1781 |
| Eco72I | CACGTG | 1 cut(s) | 220 |
| Eco88I | CYCGRG | 2 cut(s) | 2573, 3529 |
| EcoICRI | GAGCTC | 2 cut(s) | 2855, 3054 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1613 |
| EcoO109I | RGGNCCY | 1 cut(s) | 730 |
| EcoRI | GAATTC | 2 cut(s) | 907, 2349 |
| EcoRII | CCWGG | 8 cut(s) | 464, 1064, 1836, 2937, 3124, 3774, 3861, 3934 |
| EcoT14I | CCWWGG | 7 cut(s) | 1718, 1762, 1876, 2185, 2256, 2467, 2782 |
| EcoT38I | GRGCYC | 2 cut(s) | 2857, 3056 |
| EgeI | GGCGCC | 1 cut(s) | 403 |
| EheI | GGCGCC | 1 cut(s) | 403 |
| ErhI | CCWWGG | 7 cut(s) | 1718, 1762, 1876, 2185, 2256, 2467, 2782 |
| Esp3I | CGTCTC | 4 cut(s) | 313, 377, 2303, 3041 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 987, 1019, 1086, 1118 |
| FaqI | GGGAC | 5 cut(s) | 563, 889, 3033, 3472, 3512 |
| FauI | CCCGC | 3 cut(s) | 1954, 2390, 3439 |
| FauNDI | CATATG | 2 cut(s) | 883, 2715 |
| FblI | GTMKAC | 1 cut(s) | 3917 |
| Fnu4HI | GCNGC | 9 cut(s) | 92, 1818, 1983, 2538, 2742, 3006, 3173, 3802, 3852 |
| FriOI | GRGCYC | 2 cut(s) | 2857, 3056 |
| Fsp4HI | GCNGC | 9 cut(s) | 92, 1818, 1983, 2538, 2742, 3006, 3173, 3802, 3852 |
| FspBI | CTAG | 6 cut(s) | 429, 1379, 1934, 2625, 3756, 3923 |
| GlaI | GCGC | 1 cut(s) | 403 |
| GluI | GCNGC | 9 cut(s) | 92, 1818, 1983, 2538, 2742, 3006, 3173, 3802, 3852 |
| GsuI | CTGGAG | 9 cut(s) | 487, 746, 2171, 2672, 2841, 3078, 3144, 3505, 3758 |
| HaeII | RGCGCY | 1 cut(s) | 405 |
| HapII | CCGG | 6 cut(s) | 399, 453, 610, 1347, 2520, 3023 |
| HgaI | GACGC | 3 cut(s) | 1967, 2870, 3897 |
| HhaI | GCGC | 1 cut(s) | 404 |
| Hin1I | GRCGYC | 2 cut(s) | 402, 3908 |
| Hin6I | GCGC | 1 cut(s) | 402 |
| HinP1I | GCGC | 1 cut(s) | 402 |
| HincII | GTYRAC | 5 cut(s) | 855, 1589, 2170, 2263, 3918 |
| HindII | GTYRAC | 5 cut(s) | 855, 1589, 2170, 2263, 3918 |
| HindIII | AAGCTT | 1 cut(s) | 1215 |
| HpaI | GTTAAC | 2 cut(s) | 855, 2263 |
| HpaII | CCGG | 6 cut(s) | 399, 453, 610, 1347, 2520, 3023 |
| HphI | GGTGA | 3 cut(s) | 277, 683, 2715 |
| Hpy99I | CGWCG | 6 cut(s) | 14, 91, 100, 344, 347, 428 |
| HpyCH4IV | ACGT | 3 cut(s) | 219, 1520, 2312 |
| HpySE526I | ACGT | 3 cut(s) | 219, 1520, 2312 |
| Hsp92I | GRCGYC | 2 cut(s) | 402, 3908 |
| HspAI | GCGC | 1 cut(s) | 402 |
| KasI | GGCGCC | 1 cut(s) | 401 |
| KroI | GCCGGC | 1 cut(s) | 398 |
| KroNI | GCCGGC | 1 cut(s) | 400 |
| KspAI | GTTAAC | 2 cut(s) | 855, 2263 |
| LguI | GCTCTTC | 1 cut(s) | 3498 |
| LmnI | GCTCC | 5 cut(s) | 2152, 2860, 2940, 3486, 3777 |
| Lsp1109I | GCAGC | 3 cut(s) | 1829, 2549, 3017 |
| LweI | GCATC | 7 cut(s) | 668, 1389, 1862, 1969, 2637, 2904, 3548 |
| MaeI | CTAG | 6 cut(s) | 429, 1379, 1934, 2625, 3756, 3923 |
| MaeII | ACGT | 3 cut(s) | 219, 1520, 2312 |
| MaeIII | GTNAC | 7 cut(s) | 21, 1713, 1726, 2721, 2818, 2842, 3586 |
| MbiI | CCGCTC | 2 cut(s) | 383, 1496 |
| MfeI | CAATTG | 2 cut(s) | 590, 2502 |
| MflI | RGATCY | 6 cut(s) | 125, 606, 1159, 2200, 3230, 3931 |
| MhlI | GDGCHC | 5 cut(s) | 775, 2857, 2937, 3056, 3692 |
| MluI | ACGCGT | 1 cut(s) | 2862 |
| Mly113I | GGCGCC | 1 cut(s) | 402 |
| MlyI | GAGTC | 5 cut(s) | 8, 478, 1796, 3913, 3923 |
| MmeI | TCCRAC | 7 cut(s) | 207, 219, 282, 2666, 2949, 3249, 3948 |
| MroNI | GCCGGC | 1 cut(s) | 398 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1779, 2791, 3146 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1416, 1870, 2213, 2368, 2589 |
| MspA1I | CMGCKG | 5 cut(s) | 80, 1820, 2397, 3446, 3801 |
| MspCI | CTTAAG | 2 cut(s) | 1613, 3737 |
| MspI | CCGG | 6 cut(s) | 399, 453, 610, 1347, 2520, 3023 |
| MunI | CAATTG | 2 cut(s) | 590, 2502 |
| Mva1269I | GAATGC | 4 cut(s) | 1157, 1411, 1597, 3456 |
| MvaI | CCWGG | 8 cut(s) | 466, 1066, 1838, 2939, 3126, 3776, 3863, 3936 |
| MvnI | CGCG | 2 cut(s) | 1961, 2864 |
| NaeI | GCCGGC | 1 cut(s) | 400 |
| NarI | GGCGCC | 1 cut(s) | 402 |
| NciI | CCSGG | 2 cut(s) | 611, 1347 |
| NcoI | CCATGG | 2 cut(s) | 2467, 2782 |
| NdeI | CATATG | 2 cut(s) | 883, 2715 |
| NgoMIV | GCCGGC | 1 cut(s) | 398 |
| NheI | GCTAGC | 1 cut(s) | 3755 |
| NlaIV | GGNNCC | 7 cut(s) | 403, 457, 1161, 2943, 3021, 3612, 3933 |
| NmeAIII | GCCGAG | 1 cut(s) | 3836 |
| NmuCI | GTSAC | 5 cut(s) | 21, 2721, 2818, 2842, 3586 |
| NspI | RCATGY | 3 cut(s) | 111, 1063, 1587 |
| PaeI | GCATGC | 1 cut(s) | 111 |
| PaeR7I | CTCGAG | 1 cut(s) | 2573 |
| PagI | TCATGA | 2 cut(s) | 735, 2872 |
| PceI | AGGCCT | 1 cut(s) | 3369 |
| PciI | ACATGT | 2 cut(s) | 1059, 1583 |
| PciSI | GCTCTTC | 1 cut(s) | 3498 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 92, 372 |
| PctI | GAATGC | 4 cut(s) | 1157, 1411, 1597, 3456 |
| PdiI | GCCGGC | 1 cut(s) | 400 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1779, 2791, 3146 |
| PflFI | GACNNNGTC | 1 cut(s) | 422 |
| PfoI | TCCNGGA | 2 cut(s) | 3861, 3934 |
| PkrI | GCNGC | 9 cut(s) | 93, 1819, 1984, 2539, 2743, 3007, 3174, 3803, 3853 |
| Ple19I | CGATCG | 1 cut(s) | 442 |
| PleI | GAGTC | 5 cut(s) | 8, 477, 1796, 3913, 3922 |
| PluTI | GGCGCC | 1 cut(s) | 405 |
| PmaCI | CACGTG | 1 cut(s) | 220 |
| PmlI | CACGTG | 1 cut(s) | 220 |
| PpsI | GAGTC | 5 cut(s) | 8, 477, 1796, 3913, 3922 |
| Ppu21I | YACGTR | 1 cut(s) | 220 |
| PscI | ACATGT | 2 cut(s) | 1059, 1583 |
| PshBI | ATTAAT | 1 cut(s) | 3555 |
| Psp124BI | GAGCTC | 2 cut(s) | 2857, 3056 |
| Psp1406I | AACGTT | 1 cut(s) | 1520 |
| Psp6I | CCWGG | 8 cut(s) | 464, 1064, 1836, 2937, 3124, 3774, 3861, 3934 |
| PspCI | CACGTG | 1 cut(s) | 220 |
| PspGI | CCWGG | 8 cut(s) | 464, 1064, 1836, 2937, 3124, 3774, 3861, 3934 |
| PspN4I | GGNNCC | 7 cut(s) | 403, 457, 1161, 2943, 3021, 3612, 3933 |
| PspPI | GGNCC | 6 cut(s) | 118, 730, 998, 2193, 2399, 3020 |
| PstI | CTGCAG | 2 cut(s) | 3215, 3658 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2419 |
| PsuI | RGATCY | 6 cut(s) | 125, 606, 1159, 2200, 3230, 3931 |
| PsyI | GACNNNGTC | 1 cut(s) | 422 |
| PvuI | CGATCG | 1 cut(s) | 442 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1416, 1870, 2213, 2368, 2589 |
| SacI | GAGCTC | 2 cut(s) | 2857, 3056 |
| SalI | GTCGAC | 1 cut(s) | 3916 |
| SapI | GCTCTTC | 1 cut(s) | 3498 |
| SatI | GCNGC | 9 cut(s) | 92, 1818, 1983, 2538, 2742, 3006, 3173, 3802, 3852 |
| Sau96I | GGNCC | 6 cut(s) | 118, 730, 998, 2193, 2399, 3020 |
| ScaI | AGTACT | 3 cut(s) | 1263, 1770, 2968 |
| SchI | GAGTC | 5 cut(s) | 8, 478, 1796, 3913, 3923 |
| SduI | GDGCHC | 5 cut(s) | 775, 2857, 2937, 3056, 3692 |
| SfaNI | GCATC | 7 cut(s) | 668, 1389, 1862, 1969, 2637, 2904, 3548 |
| SfcI | CTRYAG | 3 cut(s) | 1890, 3211, 3654 |
| SfoI | GGCGCC | 1 cut(s) | 403 |
| Sfr274I | CTCGAG | 1 cut(s) | 2573 |
| SinI | GGWCC | 1 cut(s) | 3020 |
| SlaI | CTCGAG | 1 cut(s) | 2573 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1416, 1870, 2213, 2368, 2589 |
| SmlI | CTYRAG | 3 cut(s) | 1613, 2573, 3737 |
| SmoI | CTYRAG | 3 cut(s) | 1613, 2573, 3737 |
| SpeI | ACTAGT | 1 cut(s) | 1933 |
| SphI | GCATGC | 1 cut(s) | 111 |
| SseBI | AGGCCT | 1 cut(s) | 3369 |
| SspDI | GGCGCC | 1 cut(s) | 401 |
| SspMI | CTAG | 6 cut(s) | 429, 1379, 1934, 2625, 3756, 3923 |
| SstI | GAGCTC | 2 cut(s) | 2857, 3056 |
| StuI | AGGCCT | 1 cut(s) | 3369 |
| StyI | CCWWGG | 7 cut(s) | 1718, 1762, 1876, 2185, 2256, 2467, 2782 |
| TaiI | ACGT | 3 cut(s) | 222, 1523, 2315 |
| TaqII | GACCGA | 1 cut(s) | 3229 |
| TauI | GCSGC | 6 cut(s) | 94, 1985, 2744, 3175, 3804, 3854 |
| TscAI | CASTG | 8 cut(s) | 500, 855, 1170, 1470, 1552, 2823, 3121, 3388 |
| TseFI | GTSAC | 5 cut(s) | 21, 2721, 2818, 2842, 3586 |
| TseI | GCWGC | 3 cut(s) | 1817, 2537, 3005 |
| Tsp45I | GTSAC | 5 cut(s) | 21, 2721, 2818, 2842, 3586 |
| TspGWI | ACGGA | 2 cut(s) | 359, 3758 |
| TspRI | CASTG | 8 cut(s) | 500, 855, 1170, 1470, 1552, 2823, 3121, 3388 |
| Tth111I | GACNNNGTC | 1 cut(s) | 422 |
| Vha464I | CTTAAG | 2 cut(s) | 1613, 3737 |
| VneI | GTGCAC | 1 cut(s) | 771 |
| VpaK11BI | GGWCC | 1 cut(s) | 3020 |
| VspI | ATTAAT | 1 cut(s) | 3555 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1613 |
| XapI | RAATTY | 6 cut(s) | 907, 1504, 1648, 2332, 2349, 2423 |
| XbaI | TCTAGA | 1 cut(s) | 3922 |
| XceI | RCATGY | 3 cut(s) | 111, 1063, 1587 |
| XhoI | CTCGAG | 1 cut(s) | 2573 |
| XmiI | GTMKAC | 1 cut(s) | 3917 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1779, 2791, 3146 |
| XspI | CTAG | 6 cut(s) | 429, 1379, 1934, 2625, 3756, 3923 |
| ZrmI | AGTACT | 3 cut(s) | 1263, 1770, 2968 |