Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002682

Physical Location & Seq

Genomic Coordinates Reverse (-)

33513964 .. 33516142

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG168400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTTCCGCTTCACTGCTTAGGAGTTCTCTTAAACTGTCAGCAGAGTAATCCTTTTGCTCACATTAGAGACAAAAATGGCCTCATTACAAATCTTGTTTCAGGTCTTCAATTACCAAGTGAAGAGATTCGGGGAGAAATCCTGTTTGTTCTGTACAAAGTATCTGCTCTCCACTATGCATCAGAGGATGCTGATGGATCTGATCTTTTATTTTCCTTTTGCCCCAAGTCAGTGCGCCTATCTCTGGAGGCCCTCATGAAGACCCAAAGTGATGACGTCCACTTGAATTGTATAGCTCTTTTGACGGTCTTGGCTCAGAGAGGGCTTTTTGGGACTGCATATGCCTTTGATTTAAACAGCATGAGTTCATCTGAAGGAGATAGCTTTGGGCAAGCAACAGAAGATGGAAAAGATATGCATCCTCTGAACATATTATTTACTGAGGCCATCAAAGGCCCACTTCTTTCAACAGACAGCCAAGTCCAGATCAGTACACTAGATTTTCTCTTTCACTATATGTCCTGTGAAGGCACTTCATCCAGAGAAATCCAAGTACTAGTTGAAGAAAGCATTGCAGATTATGTGTTTGAAATACTGAGATTGTCAGAATGCAAGGATCCGGCTGTCAAATCATGCCTTCAGGTACTTGATATTTTATCAAAAGCTGAGCAAGCTTTCAAACAGAGGCTTCTTGTTGGGTTTGCAATTCTGGTTCCAGTACTACATTATGTTGCTGAAGTTCCTTTCCATCTGGTTCAAAATCAAACTCTGAAGCTTATTTTGAACTGCATTTCCGATTGCCCCGGAATGCTATCCTCCTCTCATATAGAGGAACTAGTTCCTGTTTTAACAAAGATGCTTAAACAACATACTGATGGGGATATGGGCATGCTTGAGAGACATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

33.45

Weight (kDa)

5.0

Isoelectric Point (pI)

63.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14180 AT4G14180
fragaria_vesca	FvH4_4g12860
malus_domestica	MD04G1022200.v1.1
prunus_persica	Prupe.1G172400_v2.0.a1 Prupe.1G176200_v2.0.a1
pyrus_communis	pycom04g01870
rosa_chinensis	RchiOBHm_Chr4g0412451 RchiOBHm_Chr4g0412511
rosa_laevigata	RLG00000008284 RLG00000008287 RLG00000008289 RLG00000008295 RLG00000008298
rosa_multiflora	Rmu_sc0002604.1_g000020 Rmu_sc0003914.1_g000006 Rmu_sc0005615.1_g000012
rosa_roxburghii	Rroxscaffold_161G00448090 Rroxscaffold_2G00117420 Rroxscaffold_4G00325160 Rroxscaffold_5G00356600 Rroxscaffold_5G00356610 Rroxscaffold_5G00356660 Rroxscaffold_5G00356680 Rroxscaffold_5G00356720 Rroxscaffold_7G00197050
rosa_rugosa	Rorug04G0103300 Rorug04G0103400 Rorug04G0103700.1
rosa_samantha	Rh4AG173200 Rh4AG173600 Rh4BG173100 Rh4CG184000 Rh4CG184500 Rh4DG167600 Rh4DG168300 Rh4DG168400 Rh4DG168900
rosa_wichuraiana	Rw4G014490 Rw4G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	479
AatII	GACGTC	1 cut(s)	279
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	3 cut(s)	205, 611, 624
AcuI	CTGAAG	4 cut(s)	393, 623, 756, 791
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	5 cut(s)	155, 493, 555, 645, 720
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	8 cut(s)	110, 286, 468, 563, 590, 679, 758, 784
AhlI	ACTAGT	2 cut(s)	556, 835
AloI	GAACNNNNNNTCC	2 cut(s)	776, 808
AluBI	AGCT	5 cut(s)	296, 384, 665, 674, 775
AluI	AGCT	5 cut(s)	296, 384, 665, 674, 775
Alw26I	GTCTC	2 cut(s)	63, 892
AlwI	GGATC	3 cut(s)	205, 611, 624
AoxI	GGCC	4 cut(s)	79, 249, 444, 454
Asp700I	GAANNNNTTC	2 cut(s)	126, 837
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	250, 455
AsuC2I	CCSGG	1 cut(s)	804
BamHI	GGATCC	1 cut(s)	616
BbsI	GAAGAC	2 cut(s)	98, 266
BccI	CCATC	5 cut(s)	188, 398, 455, 756, 869
BcnI	CCSGG	1 cut(s)	804
BcoDI	GTCTC	2 cut(s)	63, 892
BcuI	ACTAGT	2 cut(s)	556, 835
BfaI	CTAG	3 cut(s)	497, 557, 836
BlpI	GCTNAGC	1 cut(s)	666
BmcAI	AGTACT	2 cut(s)	555, 720
Bme1390I	CCNGG	1 cut(s)	804
BmgT120I	GGNCC	2 cut(s)	250, 455
BmiI	GGNNCC	3 cut(s)	6, 618, 714
BmrFI	CCNGG	1 cut(s)	804
BmsI	GCATC	4 cut(s)	178, 188, 427, 846
BpiI	GAAGAC	2 cut(s)	98, 266
BpmI	CTGGAG	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	19
Bpu1102I	GCTNAGC	1 cut(s)	666
BpuMI	CCSGG	1 cut(s)	804
BsaBI	GATNNNNATC	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	802
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	716
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	802
BseGI	GGATG	3 cut(s)	193, 418, 536
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	4 cut(s)	329, 432, 587, 657
BseNI	ACTGG	1 cut(s)	716
BseRI	GAGGAG	1 cut(s)	808
BshFI	GGCC	4 cut(s)	81, 251, 446, 456
BsiSI	CCGG	2 cut(s)	620, 804
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	2 cut(s)	63, 892
BsmFI	GGGAC	1 cut(s)	346
BsmI	GAATGC	2 cut(s)	614, 813
BsnI	GGCC	4 cut(s)	81, 251, 446, 456
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	4 cut(s)	197, 202, 486, 616
Bsp1720I	GCTNAGC	1 cut(s)	666
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	4 cut(s)	81, 251, 446, 456
BspCNI	CTCAG	4 cut(s)	328, 433, 588, 658
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	6, 618, 714
BspPI	GGATC	3 cut(s)	205, 611, 624
BsrDI	GCAATG	1 cut(s)	570
BsrGI	TGTACA	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	716
BssECI	CCNNGG	1 cut(s)	802
BssMI	GATC	4 cut(s)	197, 202, 486, 616
BssNI	GRCGYC	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	38, 307
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	276
BstAUI	TGTACA	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	393, 672, 890
BstDEI	CTNAG	5 cut(s)	19, 315, 441, 596, 666
BstF5I	GGATG	3 cut(s)	193, 418, 536
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	4 cut(s)	200, 205, 489, 619
BstMAI	GTCTC	2 cut(s)	63, 892
BstMBI	GATC	4 cut(s)	197, 202, 486, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	671
BstNSI	RCATGY	1 cut(s)	892
BstSCI	CCNGG	1 cut(s)	802
BstV2I	GAAGAC	2 cut(s)	98, 266
BstX2I	RGATCY	2 cut(s)	197, 616
BstYI	RGATCY	2 cut(s)	197, 616
BsuRI	GGCC	4 cut(s)	81, 251, 446, 456
BtsCI	GGATG	3 cut(s)	193, 418, 536
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 237
Cac8I	GCNNGC	3 cut(s)	393, 672, 890
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	250, 455
Csp6I	GTAC	5 cut(s)	154, 492, 554, 644, 719
CspCI	CAANNNNNGTGG	2 cut(s)	269, 304
CviAII	CATG	4 cut(s)	256, 361, 633, 889
CviQI	GTAC	5 cut(s)	154, 492, 554, 644, 719
DdeI	CTNAG	5 cut(s)	19, 315, 441, 596, 666
DpnI	GATC	4 cut(s)	199, 204, 488, 618
DpnII	GATC	4 cut(s)	197, 202, 486, 616
DraI	TTTAAA	1 cut(s)	354
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco57I	CTGAAG	4 cut(s)	393, 623, 756, 791
EcoO109I	RGGNCCY	1 cut(s)	250
EcoT22I	ATGCAT	2 cut(s)	181, 420
FaeI	CATG	4 cut(s)	259, 364, 636, 892
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	4 cut(s)	255, 360, 632, 888
FauNDI	CATATG	1 cut(s)	340
FokI	GGATG	3 cut(s)	200, 405, 523
FspBI	CTAG	3 cut(s)	497, 557, 836
GlaI	GCGC	1 cut(s)	236
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	4 cut(s)	81, 251, 446, 456
HapII	CCGG	2 cut(s)	620, 804
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	259, 364, 636, 892
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HindIII	AAGCTT	2 cut(s)	672, 773
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	2 cut(s)	620, 804
Hpy166II	GTNNAC	2 cut(s)	280, 494
Hpy188I	TCNGA	8 cut(s)	184, 202, 318, 373, 426, 607, 771, 796
Hpy188III	TCNNGA	4 cut(s)	245, 256, 484, 540
Hpy8I	GTNNAC	2 cut(s)	280, 494
HpyAV	CCTTC	3 cut(s)	368, 521, 647
HpyCH4III	ACNGT	2 cut(s)	38, 307
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	7 cut(s)	179, 338, 418, 575, 612, 704, 789
HpyF10VI	GCNNNNNNNGC	1 cut(s)	671
HpyF3I	CTNAG	5 cut(s)	19, 315, 441, 596, 666
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	259, 364, 636, 892
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	197, 202, 486, 616
LweI	GCATC	4 cut(s)	178, 188, 427, 846
MaeI	CTAG	3 cut(s)	497, 557, 836
MaeII	ACGT	1 cut(s)	276
MalI	GATC	4 cut(s)	199, 204, 488, 618
MboI	GATC	4 cut(s)	197, 202, 486, 616
MboII	GAAGA	5 cut(s)	98, 134, 271, 413, 575
MflI	RGATCY	2 cut(s)	197, 616
MluCI	AATT	3 cut(s)	110, 286, 705
Mph1103I	ATGCAT	2 cut(s)	181, 420
MroXI	GAANNNNTTC	2 cut(s)	126, 837
MseI	TTAA	4 cut(s)	32, 353, 848, 861
MslI	CAYNNNNRTG	1 cut(s)	873
MspI	CCGG	2 cut(s)	620, 804
MspR9I	CCNGG	1 cut(s)	804
Mva1269I	GAATGC	2 cut(s)	614, 813
MwoI	GCNNNNNNNGC	1 cut(s)	671
NciI	CCSGG	1 cut(s)	804
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	4 cut(s)	197, 202, 486, 616
NlaIII	CATG	4 cut(s)	259, 364, 636, 892
NlaIV	GGNNCC	3 cut(s)	6, 618, 714
NsiI	ATGCAT	2 cut(s)	181, 420
NspI	RCATGY	1 cut(s)	892
PaeI	GCATGC	1 cut(s)	892
PagI	TCATGA	1 cut(s)	255
PctI	GAATGC	2 cut(s)	614, 813
PdmI	GAANNNNTTC	2 cut(s)	126, 837
PfeI	GAWTC	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	6, 618, 714
PspPI	GGNCC	2 cut(s)	250, 455
PsuI	RGATCY	2 cut(s)	197, 616
RsaI	GTAC	5 cut(s)	155, 493, 555, 645, 720
RsaNI	GTAC	5 cut(s)	154, 492, 554, 644, 719
RseI	CAYNNNNRTG	1 cut(s)	873
SaqAI	TTAA	4 cut(s)	32, 353, 848, 861
Sau3AI	GATC	4 cut(s)	197, 202, 486, 616
Sau96I	GGNCC	2 cut(s)	250, 455
ScaI	AGTACT	2 cut(s)	555, 720
ScrFI	CCNGG	1 cut(s)	804
SetI	ASST	8 cut(s)	106, 279, 298, 386, 645, 667, 676, 777
SfaNI	GCATC	4 cut(s)	178, 188, 427, 846
SmiMI	CAYNNNNRTG	1 cut(s)	873
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
SpeI	ACTAGT	2 cut(s)	556, 835
SphI	GCATGC	1 cut(s)	892
Sse9I	AATT	3 cut(s)	110, 286, 705
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	3 cut(s)	497, 557, 836
StyD4I	CCNGG	1 cut(s)	802
TaaI	ACNGT	2 cut(s)	38, 307
TaiI	ACGT	1 cut(s)	279
TasI	AATT	3 cut(s)	110, 286, 705
TatI	WGTACW	4 cut(s)	153, 491, 553, 718
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	4 cut(s)	32, 353, 848, 861
Tru9I	TTAA	4 cut(s)	32, 353, 848, 861
TscAI	CASTG	2 cut(s)	20, 237
TspDTI	ATGAA	3 cut(s)	272, 357, 525
TspRI	CASTG	2 cut(s)	20, 237
XceI	RCATGY	1 cut(s)	892
XmnI	GAANNNNTTC	2 cut(s)	126, 837
XspI	CTAG	3 cut(s)	497, 557, 836
ZraI	GACGTC	1 cut(s)	277
ZrmI	AGTACT	2 cut(s)	555, 720
Zsp2I	ATGCAT	2 cut(s)	181, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.