Rroxscaffold_5G00356610

AtPRD1,PRD1

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
35889435 .. 35908691
19257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356610.1

Sequence Viewer

Length: 1158 bp
ATGGCTAGGATCTTGGAATGTGATCATGTTTCTAACCCCGGAGCAGCTGCAATTGTTGAGTTTTTCAGCAATAAGGCCGATGTTGGCCTTCATGCTTCACTATTGGTAAGTGAAGAGCAACATTTAGACTTGAAGAAGTGTAACTGGGCTAATGGATTTTCCAGAGTTGTTGGTACGAGTACGTTGTTCGAGGATGAGGTGGAATTAGTTTGGACAATTACTTGCTCGGACCTGTCCGCCAATATGTCCAGACGTGAATTACCATATATATATGTGATGAATATGATTGATGAATTCTTCAGCCACCTCCCGAACTGGAAAATCGCCATTTTTTCTCCAAAGGATTTCTCCCTCCTCGTGCAAGCTTTTGAAGTGAAACCAAGCCCGGACCGTTCGCCACCTCCCCACGAGCAGACCGGTGGCCTTCTTTCCTCCCCGGACGGCCGCTACGCGGCGGTTGATGCTTCATCAACCGTTATATTCCCTCTCAAAACGAAAAACCCCCAAATTGTGTGGCGCCAAAGTTCAAAACACCGCCTCCGCCTCAGATCGGCAACAATGTACTTCGACGATTCTCAGTCACACAACCTCCAACACTACTACGGACCAGAACCAGAAGAAGATGAAGACTCCGGTGACAATTACGCTTCGCCGCCGCCGACTTGCTCCCAGGGCCACCGCTCCACTCTCGTCTTCCAAACCAAGCAAGGCGGCTCCATCTGCCTCCTCTGCTTCTCCAATCTCGTCTCGAACCCTCAATCTCCCACCGTCCACGTGTCCTACGCGCTCTCCCAGCTCTCCCAGACCCTCTCCGACCCTCCCTTCCTCCGCTCCCTCCTCACCTTCCACTCTCACCTCCTCGTCTCCCCGCTCGTCCAAACCCTAGCCTCCTTCGACGACGACCCCATCGCACGACAAGTCGTGGATCTCGTCGCCGGTCTTTGCCATTCCGGCGATCCCTCGCTCGCTGCTGAGTTCGTCGCTCGGCTTTCCGATCTCCTCTCTTCCGGCGCCTTGGCTTGGAGTCGCCGTCAGGTTTACACGCTTCACTGCTTAGGAGTTCTCTTAAACTGTCAGCAGAGTAATCCTTTTGCTCACATTAGAGACAAAAATGGCCTCATTACAAATCTTGTTTCAGGTCTTCAATTACCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

42.62

Weight (kDa)

5.81

Isoelectric Point (pI)

59.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 516, 1010
AccBSI CCGCTC 3 cut(s) 681, 831, 871
AccII CGCG 2 cut(s) 452, 785
AclWI GGATC 3 cut(s) 17, 933, 950
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 283
AcvI CACGTG 1 cut(s) 775
AcyI GRCGYC 2 cut(s) 517, 1011
AfaI GTAC 3 cut(s) 175, 181, 563
AfiI CCNNNNNNNGG 3 cut(s) 451, 550, 1020
AflIII ACRYGT 1 cut(s) 774
AgeI ACCGGT 1 cut(s) 416
AgsI TTSAA 4 cut(s) 133, 371, 528, 1145
AjiI CACGTC 1 cut(s) 254
AjnI CCWGG 1 cut(s) 669
AluBI AGCT 3 cut(s) 47, 365, 796
AluI AGCT 3 cut(s) 47, 365, 796
Alw26I GTCTC 3 cut(s) 751, 868, 1098
AlwI GGATC 3 cut(s) 17, 933, 950
AoxI GGCC 6 cut(s) 75, 85, 421, 442, 673, 1114
ApeKI GCWGC 3 cut(s) 44, 47, 968
ApoI RAATTY 1 cut(s) 293
AsiGI ACCGGT 1 cut(s) 416
AspLEI GCGC 3 cut(s) 519, 787, 1013
AspS9I GGNCC 4 cut(s) 229, 388, 605, 673
AsuC2I CCSGG 3 cut(s) 39, 386, 437
AsuHPI GGTGA 3 cut(s) 647, 832, 845
AvaII GGWCC 3 cut(s) 229, 388, 605
BanI GGYRCC 2 cut(s) 516, 1010
BauI CACGAG 2 cut(s) 356, 407
BbrPI CACGTG 1 cut(s) 775
BbsI GAAGAC 3 cut(s) 633, 685, 1133
BbvI GCAGC 3 cut(s) 34, 56, 955
BccI CCATC 2 cut(s) 725, 914
BceAI ACGGC 2 cut(s) 457, 1014
BciT130I CCWGG 1 cut(s) 671
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 3 cut(s) 39, 386, 437
BcoDI GTCTC 3 cut(s) 751, 868, 1098
BfaI CTAG 2 cut(s) 6, 884
BfoI RGCGCY 2 cut(s) 520, 1014
BglI GCCNNNNNGGC 1 cut(s) 951
BisI GCNGC 8 cut(s) 45, 48, 445, 453, 653, 656, 712, 969
BlsI GCNGC 8 cut(s) 46, 49, 446, 454, 654, 657, 713, 970
Bme1390I CCNGG 4 cut(s) 39, 386, 437, 671
Bme18I GGWCC 3 cut(s) 229, 388, 605
BmgBI CACGTC 1 cut(s) 254
BmgT120I GGNCC 4 cut(s) 229, 388, 605, 673
BmiI GGNNCC 3 cut(s) 518, 715, 1012
BmrFI CCNGG 4 cut(s) 39, 386, 437, 671
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 451
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 3 cut(s) 633, 685, 1133
Bpu10I CCTNAGC 1 cut(s) 1054
BpuMI CCSGG 3 cut(s) 39, 386, 437
BsaAI YACGTR 1 cut(s) 775
BsaHI GRCGYC 2 cut(s) 517, 1011
BsaJI CCNNGG 6 cut(s) 37, 435, 669, 670, 1014, 1151
BsaWI WCCGGW 2 cut(s) 416, 632
BsaXI ACNNNNNCTCC 8 cut(s) 522, 552, 573, 603, 773, 803, 1015, 1045
Bsc4I CCNNNNNNNGG 3 cut(s) 451, 550, 1020
Bse118I RCCGGY 2 cut(s) 416, 935
Bse1I ACTGG 2 cut(s) 149, 320
BseBI CCWGG 1 cut(s) 671
BseDI CCNNGG 6 cut(s) 37, 435, 669, 670, 1014, 1151
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 3 cut(s) 451, 550, 1020
BseMII CTCAG 3 cut(s) 559, 590, 963
BseNI ACTGG 2 cut(s) 149, 320
BseRI GAGGAG 5 cut(s) 344, 716, 827, 848, 989
BseX3I CGGCCG 1 cut(s) 442
BseXI GCAGC 3 cut(s) 34, 56, 955
BseYI CCCAGC 1 cut(s) 792
Bsh1236I CGCG 2 cut(s) 452, 785
Bsh1285I CGRYCG 1 cut(s) 445
BshFI GGCC 6 cut(s) 77, 87, 423, 444, 675, 1116
BshNI GGYRCC 2 cut(s) 516, 1010
BshTI ACCGGT 1 cut(s) 416
BsiEI CGRYCG 1 cut(s) 445
BsiSI CCGG 8 cut(s) 39, 386, 417, 437, 633, 936, 951, 1008
BslI CCNNNNNNNGG 3 cut(s) 451, 550, 1020
BsmAI GTCTC 3 cut(s) 751, 868, 1098
BsmBI CGTCTC 2 cut(s) 751, 868
BsnI GGCC 6 cut(s) 77, 87, 423, 444, 675, 1116
Bsp143I GATC 6 cut(s) 9, 22, 548, 925, 955, 994
BspANI GGCC 6 cut(s) 77, 87, 423, 444, 675, 1116
BspCNI CTCAG 3 cut(s) 558, 589, 964
BspFNI CGCG 2 cut(s) 452, 785
BspLI GGNNCC 3 cut(s) 518, 715, 1012
BspPI GGATC 3 cut(s) 17, 933, 950
BspQI GCTCTTC 1 cut(s) 108
BspT107I GGYRCC 2 cut(s) 516, 1010
BsrBI CCGCTC 3 cut(s) 681, 831, 871
BsrFI RCCGGY 2 cut(s) 416, 935
BsrI ACTGG 2 cut(s) 149, 320
BssAI RCCGGY 2 cut(s) 416, 935
BssECI CCNNGG 6 cut(s) 37, 435, 669, 670, 1014, 1151
BssMI GATC 6 cut(s) 9, 22, 548, 925, 955, 994
BssNI GRCGYC 2 cut(s) 517, 1011
BssSI CACGAG 2 cut(s) 356, 407
BssT1I CCWWGG 2 cut(s) 1014, 1151
Bst2BI CACGAG 2 cut(s) 356, 407
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 4 cut(s) 392, 475, 769, 1073
Bst6I CTCTTC 2 cut(s) 108, 1009
BstACI GRCGYC 2 cut(s) 517, 1011
BstBAI YACGTR 1 cut(s) 775
BstC8I GCNNGC 2 cut(s) 363, 966
BstDEI CTNAG 4 cut(s) 545, 576, 972, 1054
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 2 cut(s) 452, 785
BstH2I RGCGCY 2 cut(s) 520, 1014
BstHHI GCGC 3 cut(s) 519, 787, 1013
BstKTI GATC 6 cut(s) 12, 25, 551, 928, 958, 997
BstMAI GTCTC 3 cut(s) 751, 868, 1098
BstMBI GATC 6 cut(s) 9, 22, 548, 925, 955, 994
BstMCI CGRYCG 1 cut(s) 445
BstMWI GCNNNNNNNGC 6 cut(s) 461, 672, 720, 729, 793, 951
BstNI CCWGG 1 cut(s) 671
BstSCI CCNGG 4 cut(s) 37, 384, 435, 669
BstUI CGCG 2 cut(s) 452, 785
BstV1I GCAGC 3 cut(s) 34, 56, 955
BstV2I GAAGAC 3 cut(s) 633, 685, 1133
BstX2I RGATCY 2 cut(s) 9, 925
BstYI RGATCY 2 cut(s) 9, 925
BstZI CGGCCG 1 cut(s) 442
BsuRI GGCC 6 cut(s) 77, 87, 423, 444, 675, 1116
BtgZI GCGATG 1 cut(s) 892
BtrI CACGTC 1 cut(s) 254
BtsCI GGATG 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 1048
BtsIMutI CAGTG 1 cut(s) 1048
Cac8I GCNNGC 2 cut(s) 363, 966
CfoI GCGC 3 cut(s) 519, 787, 1013
Cfr10I RCCGGY 2 cut(s) 416, 935
Cfr13I GGNCC 4 cut(s) 229, 388, 605, 673
CpoI CGGWCCG 1 cut(s) 388
Csp6I GTAC 3 cut(s) 174, 180, 562
CspAI ACCGGT 1 cut(s) 416
CspCI CAANNNNNGTGG 2 cut(s) 494, 529
CspI CGGWCCG 1 cut(s) 388
CviAII CATG 2 cut(s) 26, 92
CviQI GTAC 3 cut(s) 174, 180, 562
DdeI CTNAG 4 cut(s) 545, 576, 972, 1054
DinI GGCGCC 2 cut(s) 518, 1012
DpnI GATC 6 cut(s) 11, 24, 550, 927, 957, 996
DpnII GATC 6 cut(s) 9, 22, 548, 925, 955, 994
EaeI YGGCCR 1 cut(s) 442
EagI CGGCCG 1 cut(s) 442
Eam1104I CTCTTC 2 cut(s) 108, 1009
EarI CTCTTC 2 cut(s) 108, 1009
EciI GGCGGA 2 cut(s) 226, 530
EclXI CGGCCG 1 cut(s) 442
Eco130I CCWWGG 2 cut(s) 1014, 1151
Eco47I GGWCC 3 cut(s) 229, 388, 605
Eco52I CGGCCG 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 283
Eco72I CACGTG 1 cut(s) 775
EcoRI GAATTC 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 669
EcoT14I CCWWGG 2 cut(s) 1014, 1151
EgeI GGCGCC 2 cut(s) 518, 1012
EheI GGCGCC 2 cut(s) 518, 1012
ErhI CCWWGG 2 cut(s) 1014, 1151
Esp3I CGTCTC 2 cut(s) 751, 868
FaeI CATG 2 cut(s) 29, 95
FatI CATG 2 cut(s) 25, 91
FauI CCCGC 1 cut(s) 876
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 8 cut(s) 45, 48, 445, 453, 653, 656, 712, 969
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 8 cut(s) 45, 48, 445, 453, 653, 656, 712, 969
FspBI CTAG 2 cut(s) 6, 884
GlaI GCGC 3 cut(s) 518, 786, 1012
GluI GCNGC 8 cut(s) 45, 48, 445, 453, 653, 656, 712, 969
GsaI CCCAGC 1 cut(s) 796
HaeII RGCGCY 2 cut(s) 520, 1014
HaeIII GGCC 6 cut(s) 77, 87, 423, 444, 675, 1116
HapII CCGG 8 cut(s) 39, 386, 417, 437, 633, 936, 951, 1008
HhaI GCGC 3 cut(s) 519, 787, 1013
Hin1I GRCGYC 2 cut(s) 517, 1011
Hin1II CATG 2 cut(s) 29, 95
Hin6I GCGC 3 cut(s) 517, 785, 1011
HinP1I GCGC 3 cut(s) 517, 785, 1011
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 3 cut(s) 572, 629, 1024
HpaII CCGG 8 cut(s) 39, 386, 417, 437, 633, 936, 951, 1008
HphI GGTGA 3 cut(s) 647, 832, 845
Hpy166II GTNNAC 2 cut(s) 772, 1039
Hpy188I TCNGA 4 cut(s) 229, 548, 814, 994
Hpy188III TCNNGA 4 cut(s) 162, 249, 310, 748
Hpy8I GTNNAC 2 cut(s) 772, 1039
Hpy99I CGWCG 5 cut(s) 572, 899, 902, 935, 983
HpyAV CCTTC 5 cut(s) 98, 434, 832, 853, 901
HpyCH4III ACNGT 4 cut(s) 392, 475, 769, 1073
HpyCH4IV ACGT 3 cut(s) 182, 253, 774
HpyCH4V TGCA 2 cut(s) 50, 361
HpyF10VI GCNNNNNNNGC 6 cut(s) 461, 672, 720, 729, 793, 951
HpyF3I CTNAG 4 cut(s) 545, 576, 972, 1054
HpySE526I ACGT 3 cut(s) 182, 253, 774
Hsp92I GRCGYC 2 cut(s) 517, 1011
Hsp92II CATG 2 cut(s) 29, 95
HspAI GCGC 3 cut(s) 517, 785, 1011
KasI GGCGCC 2 cut(s) 516, 1010
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 6 cut(s) 9, 22, 548, 925, 955, 994
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 5 cut(s) 41, 671, 686, 719, 836
Lsp1109I GCAGC 3 cut(s) 34, 56, 955
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 6, 884
MaeII ACGT 3 cut(s) 182, 253, 774
MaeIII GTNAC 3 cut(s) 140, 579, 635
MalI GATC 6 cut(s) 11, 24, 550, 927, 957, 996
MbiI CCGCTC 3 cut(s) 681, 831, 871
MboI GATC 6 cut(s) 9, 22, 548, 925, 955, 994
MboII GAAGA 9 cut(s) 125, 145, 289, 629, 632, 638, 685, 996, 1133
MfeI CAATTG 1 cut(s) 51
MflI RGATCY 2 cut(s) 9, 925
MluCI AATT 8 cut(s) 51, 203, 216, 257, 293, 507, 640, 1145
Mly113I GGCGCC 2 cut(s) 517, 1011
MlyI GAGTC 2 cut(s) 623, 1033
MmeI TCCRAC 2 cut(s) 616, 837
MseI TTAA 1 cut(s) 1067
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 8 cut(s) 39, 386, 417, 437, 633, 936, 951, 1008
MspR9I CCNGG 4 cut(s) 39, 386, 437, 671
MunI CAATTG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 671
MvnI CGCG 2 cut(s) 452, 785
MwoI GCNNNNNNNGC 6 cut(s) 461, 672, 720, 729, 793, 951
NarI GGCGCC 2 cut(s) 517, 1011
NciI CCSGG 3 cut(s) 39, 386, 437
NdeII GATC 6 cut(s) 9, 22, 548, 925, 955, 994
NlaIII CATG 2 cut(s) 29, 95
NlaIV GGNNCC 3 cut(s) 518, 715, 1012
NmeAIII GCCGAG 1 cut(s) 964
NmuCI GTSAC 2 cut(s) 579, 635
PasI CCCWGGG 1 cut(s) 670
PciSI GCTCTTC 1 cut(s) 108
PcsI WCGNNNNNNNCGW 2 cut(s) 656, 927
PfeI GAWTC 1 cut(s) 572
PinAI ACCGGT 1 cut(s) 416
PkrI GCNGC 8 cut(s) 46, 49, 446, 454, 654, 657, 713, 970
PleI GAGTC 2 cut(s) 623, 1032
PluTI GGCGCC 2 cut(s) 520, 1014
PmaCI CACGTG 1 cut(s) 775
PmlI CACGTG 1 cut(s) 775
PpsI GAGTC 2 cut(s) 623, 1032
Ppu21I YACGTR 1 cut(s) 775
Psp6I CCWGG 1 cut(s) 669
PspCI CACGTG 1 cut(s) 775
PspFI CCCAGC 1 cut(s) 792
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 3 cut(s) 518, 715, 1012
PspPI GGNCC 4 cut(s) 229, 388, 605, 673
PsuI RGATCY 2 cut(s) 9, 925
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 3 cut(s) 175, 181, 563
RsaNI GTAC 3 cut(s) 174, 180, 562
Rsr2I CGGWCCG 1 cut(s) 388
RsrII CGGWCCG 1 cut(s) 388
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 1067
SatI GCNGC 8 cut(s) 45, 48, 445, 453, 653, 656, 712, 969
Sau3AI GATC 6 cut(s) 9, 22, 548, 925, 955, 994
Sau96I GGNCC 4 cut(s) 229, 388, 605, 673
SchI GAGTC 2 cut(s) 623, 1033
ScrFI CCNGG 4 cut(s) 39, 386, 437, 671
SfaNI GCATC 1 cut(s) 451
SfoI GGCGCC 2 cut(s) 518, 1012
SinI GGWCC 3 cut(s) 229, 388, 605
Sse9I AATT 8 cut(s) 51, 203, 216, 257, 293, 507, 640, 1145
SspDI GGCGCC 2 cut(s) 516, 1010
SspMI CTAG 2 cut(s) 6, 884
StyD4I CCNGG 4 cut(s) 37, 384, 435, 669
StyI CCWWGG 2 cut(s) 1014, 1151
TaaI ACNGT 4 cut(s) 392, 475, 769, 1073
TaiI ACGT 3 cut(s) 185, 256, 777
TaqI TCGA 4 cut(s) 189, 567, 749, 894
TasI AATT 8 cut(s) 51, 203, 216, 257, 293, 507, 640, 1145
TatI WGTACW 1 cut(s) 561
TauI GCSGC 5 cut(s) 447, 455, 655, 658, 714
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 1 cut(s) 1067
Tru9I TTAA 1 cut(s) 1067
TscAI CASTG 1 cut(s) 1055
TseFI GTSAC 2 cut(s) 579, 635
TseI GCWGC 3 cut(s) 44, 47, 968
Tsp45I GTSAC 2 cut(s) 579, 635
TspDTI ATGAA 5 cut(s) 80, 293, 306, 456, 639
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 1 cut(s) 1055
VpaK11BI GGWCC 3 cut(s) 229, 388, 605
XapI RAATTY 1 cut(s) 293
XspI CTAG 2 cut(s) 6, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.