Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003914.1

Orthogroup ID

OG0002682

Physical Location & Seq

Genomic Coordinates Forward (+)

25501 .. 27523

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003914.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atgagaattttggttaggtctgagcgtctgaaacgctatttgaagcaagttggtgattgcagcatcacctggggccccatcaccatgatggatgccatccatggcgtcatggatgaggactacgccagccctaggctggtggtggagggaggcggtgccttaggcagcagcgtcgtgctcacagaagtttcaaaaaccatcattttcagtagttctttagtctctacaatcaacagtgcagttcatgcagcatgtcttaaggggccagcattggttgaccatgatgaaggaacaagctctggagaaattttgatatttgtgcttcttctaaattacttcactttaagaagtttgcacattgttgtaccagggattatggactggaaagttttcttagatccctcaggtaggatgcagtcattttcctttattggcatctactgccatgacctgtgcagactaatgcattttggatctcctgtggccaagcttgctgcttcatactgcctgttggagttgtttaccagaatatctgagcagaggaatagaacaggggaggagttgctatgtgccacgaagtacctaagttctgtaatggctgtattagaaggcttagttttctacagtgacctcagagtggctatgaattgtggcctgtgcctgtcaatgatcatggggtgggaattgccggacatgcatgagacaagtgtggatgcaaagaatacttggagtaggatggttgtggaagagctcgcaatgtccttagctgtcccgtgcctggcatcaaaatctttcattaatcttcacaagcctgcaattcatgttgcagttgctctgttaaaactgcagaagattcctaagtggatgagatccgtatttgattatacttgcatatctagcataattcaaaaccttgcggctaatttttttagcacagaaattgtcctattatttcgagctctattgaactcacagttcttagagatggaacaaattgctagcttaaatcagttgctccaggtgaccattcctaaccatgctctttttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

38.91

Weight (kDa)

6.36

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14180 AT4G14180
fragaria_vesca	FvH4_4g12860
malus_domestica	MD04G1022200.v1.1
prunus_persica	Prupe.1G172400_v2.0.a1 Prupe.1G176200_v2.0.a1
pyrus_communis	pycom04g01870
rosa_chinensis	RchiOBHm_Chr4g0412451 RchiOBHm_Chr4g0412511
rosa_laevigata	RLG00000008284 RLG00000008287 RLG00000008289 RLG00000008295 RLG00000008298
rosa_multiflora	Rmu_sc0002604.1_g000020 Rmu_sc0003914.1_g000006 Rmu_sc0005615.1_g000012
rosa_roxburghii	Rroxscaffold_161G00448090 Rroxscaffold_2G00117420 Rroxscaffold_4G00325160 Rroxscaffold_5G00356600 Rroxscaffold_5G00356610 Rroxscaffold_5G00356660 Rroxscaffold_5G00356680 Rroxscaffold_5G00356720 Rroxscaffold_7G00197050
rosa_rugosa	Rorug04G0103300 Rorug04G0103400 Rorug04G0103700.1
rosa_samantha	Rh4AG173200 Rh4AG173600 Rh4BG173100 Rh4CG184000 Rh4CG184500 Rh4DG167600 Rh4DG168300 Rh4DG168400 Rh4DG168900
rosa_wichuraiana	Rw4G014490 Rw4G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	2 cut(s)	153, 917
AclWI	GGATC	3 cut(s)	392, 481, 864
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	2 cut(s)	6, 306
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	2 cut(s)	366, 581
AfiI	CCNNNNNNNGG	5 cut(s)	132, 136, 408, 637, 778
AflII	CTTAAG	1 cut(s)	257
AgsI	TTSAA	4 cut(s)	43, 192, 908, 967
AjnI	CCWGG	4 cut(s)	68, 367, 777, 1017
AluBI	AGCT	6 cut(s)	297, 490, 751, 767, 959, 1002
AluI	AGCT	6 cut(s)	297, 490, 751, 767, 959, 1002
Alw21I	GWGCWC	3 cut(s)	180, 753, 961
Alw26I	GTCTC	2 cut(s)	226, 695
AlwI	GGATC	3 cut(s)	392, 481, 864
AoxI	GGCC	4 cut(s)	73, 263, 483, 652
ApaI	GGGCCC	1 cut(s)	77
ApeKI	GCWGC	5 cut(s)	60, 165, 168, 248, 494
ApoI	RAATTY	2 cut(s)	6, 306
AseI	ATTAAT	1 cut(s)	798
Asp700I	GAANNNNTTC	1 cut(s)	389
AspA2I	CCTAGG	1 cut(s)	131
AspS9I	GGNCC	3 cut(s)	73, 74, 263
AsuHPI	GGTGA	4 cut(s)	58, 65, 73, 1033
AsuNHI	GCTAGC	1 cut(s)	998
AvrII	CCTAGG	1 cut(s)	131
AxyI	CCTNAGG	2 cut(s)	160, 403
BaeGI	GKGCMC	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	3 cut(s)	77, 753, 961
Bbv12I	GWGCWC	3 cut(s)	180, 753, 961
BbvI	GCAGC	5 cut(s)	72, 177, 180, 260, 481
BccI	CCATC	6 cut(s)	82, 86, 104, 206, 730, 979
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BciT130I	CCWGG	4 cut(s)	70, 369, 779, 1019
BclI	TGATCA	1 cut(s)	669
BcoDI	GTCTC	2 cut(s)	226, 695
BfaI	CTAG	3 cut(s)	132, 897, 999
BfmI	CTRYAG	2 cut(s)	622, 845
BfrI	CTTAAG	1 cut(s)	257
BisI	GCNGC	6 cut(s)	61, 166, 169, 249, 495, 918
BlnI	CCTAGG	1 cut(s)	131
BlsI	GCNGC	6 cut(s)	62, 167, 170, 250, 496, 919
Bme1390I	CCNGG	4 cut(s)	70, 369, 779, 1019
BmgT120I	GGNCC	3 cut(s)	73, 74, 263
BmiI	GGNNCC	5 cut(s)	74, 75, 76, 157, 264
BmrFI	CCNGG	4 cut(s)	70, 369, 779, 1019
BmsI	GCATC	6 cut(s)	72, 82, 402, 444, 703, 791
BmtI	GCTAGC	1 cut(s)	1002
BpmI	CTGGAG	2 cut(s)	321, 1001
Bpu10I	CCTNAGC	1 cut(s)	763
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	4 cut(s)	69, 100, 131, 368
Bsc4I	CCNNNNNNNGG	5 cut(s)	132, 136, 408, 637, 778
Bse1I	ACTGG	1 cut(s)	386
Bse21I	CCTNAGG	2 cut(s)	160, 403
Bse3DI	GCAATG	1 cut(s)	762
BseBI	CCWGG	4 cut(s)	70, 369, 779, 1019
BseDI	CCNNGG	4 cut(s)	69, 100, 131, 368
BseGI	GGATG	7 cut(s)	96, 97, 118, 417, 718, 741, 870
BseLI	CCNNNNNNNGG	5 cut(s)	132, 136, 408, 637, 778
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	4 cut(s)	12, 417, 525, 646
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	5 cut(s)	72, 177, 180, 260, 481
BsgI	GTGCAG	2 cut(s)	258, 475
BshFI	GGCC	4 cut(s)	75, 265, 485, 654
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	3 cut(s)	180, 753, 961
BsiSI	CCGG	1 cut(s)	689
BslFI	GGGAC	1 cut(s)	755
BslI	CCNNNNNNNGG	5 cut(s)	132, 136, 408, 637, 778
BsmAI	GTCTC	2 cut(s)	226, 695
BsmFI	GGGAC	1 cut(s)	755
BsnI	GGCC	4 cut(s)	75, 265, 485, 654
Bsp120I	GGGCCC	1 cut(s)	73
Bsp1286I	GDGCHC	4 cut(s)	77, 180, 753, 961
Bsp143I	GATC	4 cut(s)	397, 473, 669, 869
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	2 cut(s)	153, 917
BspANI	GGCC	4 cut(s)	75, 265, 485, 654
BspCNI	CTCAG	4 cut(s)	13, 416, 526, 645
BspLI	GGNNCC	5 cut(s)	74, 75, 76, 157, 264
BspMAI	CTGCAG	1 cut(s)	849
BspOI	GCTAGC	1 cut(s)	1002
BspPI	GGATC	3 cut(s)	392, 481, 864
BspQI	GCTCTTC	1 cut(s)	741
BspT107I	GGYRCC	1 cut(s)	155
BspTI	CTTAAG	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	762
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	4 cut(s)	69, 100, 131, 368
BssMI	GATC	4 cut(s)	397, 473, 669, 869
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	2 cut(s)	100, 131
Bst2UI	CCWGG	4 cut(s)	70, 369, 779, 1019
Bst4CI	ACNGT	3 cut(s)	236, 626, 975
Bst6I	CTCTTC	1 cut(s)	741
BstACI	GRCGYC	1 cut(s)	105
BstAFI	CTTAAG	1 cut(s)	257
BstAPI	GCANNNNNTGC	2 cut(s)	245, 441
BstC8I	GCNNGC	6 cut(s)	127, 267, 492, 753, 813, 1000
BstDSI	CCRYGG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	1021
BstENI	CCTNNNNNAGG	1 cut(s)	406
BstF5I	GGATG	7 cut(s)	96, 97, 118, 417, 718, 741, 870
BstKTI	GATC	4 cut(s)	400, 476, 672, 872
BstMAI	GTCTC	2 cut(s)	226, 695
BstMBI	GATC	4 cut(s)	397, 473, 669, 869
BstMWI	GCNNNNNNNGC	5 cut(s)	245, 441, 491, 694, 897
BstNI	CCWGG	4 cut(s)	70, 369, 779, 1019
BstNSI	RCATGY	2 cut(s)	255, 697
BstPI	GGTNACC	1 cut(s)	1021
BstSCI	CCNGG	4 cut(s)	68, 367, 777, 1017
BstSFI	CTRYAG	2 cut(s)	622, 845
BstSLI	GKGCMC	1 cut(s)	77
BstV1I	GCAGC	5 cut(s)	72, 177, 180, 260, 481
BstX2I	RGATCY	3 cut(s)	397, 473, 869
BstYI	RGATCY	3 cut(s)	397, 473, 869
Bsu36I	CCTNAGG	2 cut(s)	160, 403
BsuRI	GGCC	4 cut(s)	75, 265, 485, 654
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	7 cut(s)	96, 97, 118, 417, 718, 741, 870
BtsIMutI	CAGTG	2 cut(s)	241, 631
Cac8I	GCNNGC	6 cut(s)	127, 267, 492, 753, 813, 1000
Cfr13I	GGNCC	3 cut(s)	73, 74, 263
CseI	GACGC	3 cut(s)	14, 94, 160
Csp6I	GTAC	2 cut(s)	365, 580
CviQI	GTAC	2 cut(s)	365, 580
DpnI	GATC	4 cut(s)	399, 475, 671, 871
DpnII	GATC	4 cut(s)	397, 473, 669, 869
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	741
EarI	CTCTTC	1 cut(s)	741
Ecl136II	GAGCTC	2 cut(s)	751, 959
Eco130I	CCWWGG	2 cut(s)	100, 131
Eco24I	GRGCYC	3 cut(s)	77, 753, 961
Eco53kI	GAGCTC	2 cut(s)	751, 959
Eco81I	CCTNAGG	2 cut(s)	160, 403
Eco91I	GGTNACC	1 cut(s)	1021
EcoICRI	GAGCTC	2 cut(s)	751, 959
EcoNI	CCTNNNNNAGG	1 cut(s)	406
EcoO109I	RGGNCCY	2 cut(s)	73, 74
EcoO65I	GGTNACC	1 cut(s)	1021
EcoRII	CCWGG	4 cut(s)	68, 367, 777, 1017
EcoT14I	CCWWGG	2 cut(s)	100, 131
EcoT22I	ATGCAT	2 cut(s)	468, 699
EcoT38I	GRGCYC	3 cut(s)	77, 753, 961
ErhI	CCWWGG	2 cut(s)	100, 131
FaqI	GGGAC	1 cut(s)	755
FbaI	TGATCA	1 cut(s)	669
Fnu4HI	GCNGC	6 cut(s)	61, 166, 169, 249, 495, 918
FokI	GGATG	7 cut(s)	83, 104, 125, 424, 725, 748, 877
FriOI	GRGCYC	3 cut(s)	77, 753, 961
Fsp4HI	GCNGC	6 cut(s)	61, 166, 169, 249, 495, 918
FspBI	CTAG	3 cut(s)	132, 897, 999
GluI	GCNGC	6 cut(s)	61, 166, 169, 249, 495, 918
GsuI	CTGGAG	2 cut(s)	321, 1001
HaeIII	GGCC	4 cut(s)	75, 265, 485, 654
HapII	CCGG	1 cut(s)	689
HgaI	GACGC	3 cut(s)	14, 94, 160
Hin1I	GRCGYC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	1 cut(s)	853
HpaII	CCGG	1 cut(s)	689
HphI	GGTGA	4 cut(s)	58, 65, 73, 1033
Hpy166II	GTNNAC	2 cut(s)	277, 522
Hpy188I	TCNGA	4 cut(s)	22, 30, 535, 635
Hpy188III	TCNNGA	1 cut(s)	300
Hpy8I	GTNNAC	2 cut(s)	277, 522
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	281, 602
HpyCH4III	ACNGT	3 cut(s)	236, 626, 975
HpyF10VI	GCNNNNNNNGC	5 cut(s)	245, 441, 491, 694, 897
Hsp92I	GRCGYC	1 cut(s)	105
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	4 cut(s)	397, 473, 669, 869
LguI	GCTCTTC	1 cut(s)	741
LmnI	GCTCC	1 cut(s)	1020
Lsp1109I	GCAGC	5 cut(s)	72, 177, 180, 260, 481
LweI	GCATC	6 cut(s)	72, 82, 402, 444, 703, 791
MaeI	CTAG	3 cut(s)	132, 897, 999
MaeIII	GTNAC	2 cut(s)	626, 1021
MalI	GATC	4 cut(s)	399, 475, 671, 871
MboI	GATC	4 cut(s)	397, 473, 669, 869
MboII	GAAGA	4 cut(s)	317, 758, 794, 862
MflI	RGATCY	3 cut(s)	397, 473, 869
MhlI	GDGCHC	4 cut(s)	77, 180, 753, 961
MlsI	TGGCCA	1 cut(s)	485
MluNI	TGGCCA	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	7 cut(s)	109, 139, 143, 412, 534, 550, 641
Mox20I	TGGCCA	1 cut(s)	485
Mph1103I	ATGCAT	2 cut(s)	468, 699
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	5 cut(s)	258, 344, 798, 839, 1004
MslI	CAYNNNNRTG	2 cut(s)	83, 86
Msp20I	TGGCCA	1 cut(s)	485
MspCI	CTTAAG	1 cut(s)	257
MspI	CCGG	1 cut(s)	689
MspR9I	CCNGG	4 cut(s)	70, 369, 779, 1019
MvaI	CCWGG	4 cut(s)	70, 369, 779, 1019
MwoI	GCNNNNNNNGC	5 cut(s)	245, 441, 491, 694, 897
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	4 cut(s)	397, 473, 669, 869
NheI	GCTAGC	1 cut(s)	998
NlaIV	GGNNCC	5 cut(s)	74, 75, 76, 157, 264
NmuCI	GTSAC	2 cut(s)	626, 1021
NsiI	ATGCAT	2 cut(s)	468, 699
NspI	RCATGY	2 cut(s)	255, 697
PciSI	GCTCTTC	1 cut(s)	741
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	853
PkrI	GCNGC	6 cut(s)	62, 167, 170, 250, 496, 919
PshBI	ATTAAT	1 cut(s)	798
Psp124BI	GAGCTC	2 cut(s)	753, 961
Psp6I	CCWGG	4 cut(s)	68, 367, 777, 1017
PspEI	GGTNACC	1 cut(s)	1021
PspGI	CCWGG	4 cut(s)	68, 367, 777, 1017
PspN4I	GGNNCC	5 cut(s)	74, 75, 76, 157, 264
PspOMI	GGGCCC	1 cut(s)	73
PspPI	GGNCC	3 cut(s)	73, 74, 263
PstI	CTGCAG	1 cut(s)	849
PsuI	RGATCY	3 cut(s)	397, 473, 869
RsaI	GTAC	2 cut(s)	366, 581
RsaNI	GTAC	2 cut(s)	365, 580
RseI	CAYNNNNRTG	2 cut(s)	83, 86
SacI	GAGCTC	2 cut(s)	753, 961
SapI	GCTCTTC	1 cut(s)	741
SaqAI	TTAA	5 cut(s)	258, 344, 798, 839, 1004
SatI	GCNGC	6 cut(s)	61, 166, 169, 249, 495, 918
Sau3AI	GATC	4 cut(s)	397, 473, 669, 869
Sau96I	GGNCC	3 cut(s)	73, 74, 263
ScrFI	CCNGG	4 cut(s)	70, 369, 779, 1019
SduI	GDGCHC	4 cut(s)	77, 180, 753, 961
SfaNI	GCATC	6 cut(s)	72, 82, 402, 444, 703, 791
SfcI	CTRYAG	2 cut(s)	622, 845
SmiMI	CAYNNNNRTG	2 cut(s)	83, 86
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SsiI	CCGC	2 cut(s)	153, 917
SspMI	CTAG	3 cut(s)	132, 897, 999
SstI	GAGCTC	2 cut(s)	753, 961
StyD4I	CCNGG	4 cut(s)	68, 367, 777, 1017
StyI	CCWWGG	2 cut(s)	100, 131
TaaI	ACNGT	3 cut(s)	236, 626, 975
TaqI	TCGA	1 cut(s)	955
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	1 cut(s)	853
Tru1I	TTAA	5 cut(s)	258, 344, 798, 839, 1004
Tru9I	TTAA	5 cut(s)	258, 344, 798, 839, 1004
TscAI	CASTG	2 cut(s)	241, 631
TseFI	GTSAC	2 cut(s)	626, 1021
TseI	GCWGC	5 cut(s)	60, 165, 168, 248, 494
Tsp45I	GTSAC	2 cut(s)	626, 1021
TspDTI	ATGAA	6 cut(s)	233, 300, 489, 659, 784, 809
TspGWI	ACGGA	1 cut(s)	862
TspRI	CASTG	2 cut(s)	241, 631
Vha464I	CTTAAG	1 cut(s)	257
VspI	ATTAAT	1 cut(s)	798
XagI	CCTNNNNNAGG	1 cut(s)	406
XapI	RAATTY	2 cut(s)	6, 306
XceI	RCATGY	2 cut(s)	255, 697
XcmI	CCANNNNNNNNNTGG	2 cut(s)	85, 133
XmaJI	CCTAGG	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	3 cut(s)	132, 897, 999
Zsp2I	ATGCAT	2 cut(s)	468, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.