Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002682

Physical Location & Seq

Genomic Coordinates Reverse (-)

36060023 .. 36062010

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00356680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAGACCCAAAGTGATGACGTCCGCTTGAATTGTAGAGCTCTTTTGACGGTCTTGGCTCGGCGAGGGCTTTTTGGGACTGCATATGCCCTTGATTTAAACAGCATGAGTTCATCTGAAGGAGATAGCTTTGGGCAAGCAACAGAAGATGGAAAAGATATGCATCCTCTGAACATATTATTTGCTGAGGCCATCAAAGGCCCACTTCTTTCAACAGACAGCCAAGTACTTGATATTTTATCAAAAGCTGAGCAAGCTTTCAAACAGAGGCTTCTTGTTGGGTTTGCAATTCTGGTTCCAGTACTACCTTATGTAGCTGAAGTTCCTTTCCATCCGGTTCAAAATCAAACTCTGAAGCTTATTTTGAACTGCATTTCTGATTGCCCCGGAATGCTATCCTCCTCTTACATAGAGGAACTAGTTCCTGTTTTAACAAAGATGCTTAAACAACTTACTGATGGGGATATGGGCATGCTTGAGGAGACATTTATAATGACCTGTTCAGTCCTTGTAGCTATCATAAGAACTCCATCTTTTCATGTGAGTTTGAATCTAGCACCATCAATTAAAGAAGCATTAGAATATGGTGTCTTAGCTTGTCTAAGTACATCCAACAGACATCCCGGTCAACTTCTGCATTCCTTGTACCTACTTAAAGAGGCCTACATGTATAGTCGTGAAGAAAATTCTACTGACTCCTCTAAAATAGAACTACGAAATTTGATTTTGAGTTTGTGCACAAAACATTTGTTGCCTTGGATGGATTCTGATAACCAAGCCAGAAAATTTGCAATGACGCTACTTTCGAGCACTTGTTCAGTGGCGGATGTGCTTTTGGGAACTGATACTGGGCAACCCCTTAGGGATGCTACTACATATCTGCCATCTGATCCCATTGATTTGCCTTTTCTACTTGGTCAAAGGAACACCCATAATTTGGAATTATCTTCTTGTCAATCTGCCATTTTGCTGATCTTATACATCAGTTCTTTACATGATGAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

36.88

Weight (kDa)

5.08

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14180 AT4G14180
fragaria_vesca	FvH4_4g12860
malus_domestica	MD04G1022200.v1.1
prunus_persica	Prupe.1G172400_v2.0.a1 Prupe.1G176200_v2.0.a1
pyrus_communis	pycom04g01870
rosa_chinensis	RchiOBHm_Chr4g0412451 RchiOBHm_Chr4g0412511
rosa_laevigata	RLG00000008284 RLG00000008287 RLG00000008289 RLG00000008295 RLG00000008298
rosa_multiflora	Rmu_sc0002604.1_g000020 Rmu_sc0003914.1_g000006 Rmu_sc0005615.1_g000012
rosa_roxburghii	Rroxscaffold_161G00448090 Rroxscaffold_2G00117420 Rroxscaffold_4G00325160 Rroxscaffold_5G00356600 Rroxscaffold_5G00356610 Rroxscaffold_5G00356660 Rroxscaffold_5G00356680 Rroxscaffold_5G00356720 Rroxscaffold_7G00197050
rosa_rugosa	Rorug04G0103300 Rorug04G0103400 Rorug04G0103700.1
rosa_samantha	Rh4AG173200 Rh4AG173600 Rh4BG173100 Rh4CG184000 Rh4CG184500 Rh4DG167600 Rh4DG168300 Rh4DG168400 Rh4DG168900
rosa_wichuraiana	Rw4G014490 Rw4G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	491
AasI	GACNNNNNNGTC	1 cut(s)	624
AatII	GACGTC	1 cut(s)	24
AccB7I	CCANNNNNTGG	1 cut(s)	937
AciI	CCGC	2 cut(s)	25, 824
AclWI	GGATC	1 cut(s)	884
AcsI	RAATTY	3 cut(s)	685, 718, 785
AcuI	CTGAAG	3 cut(s)	138, 339, 374
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	4 cut(s)	228, 303, 607, 647
AfiI	CCNNNNNNNGG	1 cut(s)	937
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	6 cut(s)	31, 213, 262, 341, 367, 550
AhlI	ACTAGT	1 cut(s)	418
AluBI	AGCT	8 cut(s)	41, 129, 248, 257, 317, 358, 515, 596
AluI	AGCT	8 cut(s)	41, 129, 248, 257, 317, 358, 515, 596
Alw21I	GWGCWC	3 cut(s)	43, 740, 812
Alw26I	GTCTC	1 cut(s)	476
Alw44I	GTGCAC	1 cut(s)	736
AlwI	GGATC	1 cut(s)	884
AoxI	GGCC	3 cut(s)	189, 199, 660
ApaLI	GTGCAC	1 cut(s)	736
ApoI	RAATTY	3 cut(s)	685, 718, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	787, 819
Asp700I	GAANNNNTTC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	200
AsuC2I	CCSGG	2 cut(s)	387, 624
AxyI	CCTNAGG	1 cut(s)	860
BaeGI	GKGCMC	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	3 cut(s)	43, 740, 812
BbvCI	CCTCAGC	1 cut(s)	186
BccI	CCATC	8 cut(s)	143, 200, 339, 452, 538, 568, 754, 892
BcnI	CCSGG	2 cut(s)	387, 624
BcoDI	GTCTC	1 cut(s)	476
BcuI	ACTAGT	1 cut(s)	418
BfaI	CTAG	2 cut(s)	419, 554
BlpI	GCTNAGC	1 cut(s)	249
BmcAI	AGTACT	2 cut(s)	228, 303
Bme1390I	CCNGG	2 cut(s)	387, 624
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	2 cut(s)	387, 624
BmrI	ACTGGG	1 cut(s)	858
BmsI	GCATC	3 cut(s)	172, 429, 856
BmuI	ACTGGG	1 cut(s)	858
BpiI	GAAGAC	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	2 cut(s)	387, 624
BsaBI	GATNNNNATC	1 cut(s)	162
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	385, 755
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	937
Bse1I	ACTGG	2 cut(s)	299, 853
Bse21I	CCTNAGG	1 cut(s)	860
Bse3DI	GCAATG	1 cut(s)	798
Bse8I	GATNNNNATC	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	385, 755
BseGI	GGATG	7 cut(s)	163, 331, 608, 619, 765, 832, 871
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	937
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	2 cut(s)	177, 240
BseNI	ACTGG	2 cut(s)	299, 853
BseRI	GAGGAG	3 cut(s)	391, 494, 688
BseSI	GKGCMC	1 cut(s)	740
BshFI	GGCC	3 cut(s)	191, 201, 662
BsiHKAI	GWGCWC	3 cut(s)	43, 740, 812
BsiSI	CCGG	3 cut(s)	335, 387, 624
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	937
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	91
BsmI	GAATGC	2 cut(s)	396, 637
BsnI	GGCC	3 cut(s)	191, 201, 662
Bsp1286I	GDGCHC	3 cut(s)	43, 740, 812
Bsp143I	GATC	2 cut(s)	889, 972
Bsp1720I	GCTNAGC	1 cut(s)	249
BspACI	CCGC	2 cut(s)	25, 824
BspANI	GGCC	3 cut(s)	191, 201, 662
BspCNI	CTCAG	2 cut(s)	178, 241
BspLI	GGNNCC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	884
BsrDI	GCAATG	1 cut(s)	798
BsrI	ACTGG	2 cut(s)	299, 853
BssECI	CCNNGG	2 cut(s)	385, 755
BssMI	GATC	2 cut(s)	889, 972
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	755
Bst4CI	ACNGT	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	3 cut(s)	138, 255, 473
BstDEI	CTNAG	5 cut(s)	186, 249, 592, 602, 860
BstF5I	GGATG	7 cut(s)	163, 331, 608, 619, 765, 832, 871
BstKTI	GATC	2 cut(s)	892, 975
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	2 cut(s)	889, 972
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNSI	RCATGY	2 cut(s)	475, 670
BstSCI	CCNGG	2 cut(s)	385, 622
BstSLI	GKGCMC	1 cut(s)	740
BstV2I	GAAGAC	1 cut(s)	11
Bsu36I	CCTNAGG	1 cut(s)	860
BsuRI	GGCC	3 cut(s)	191, 201, 662
BtsCI	GGATG	7 cut(s)	163, 331, 608, 619, 765, 832, 871
BtsIMutI	CAGTG	1 cut(s)	825
Cac8I	GCNNGC	3 cut(s)	138, 255, 473
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	805
Csp6I	GTAC	4 cut(s)	227, 302, 606, 646
CviAII	CATG	5 cut(s)	106, 472, 539, 667, 995
CviQI	GTAC	4 cut(s)	227, 302, 606, 646
DdeI	CTNAG	5 cut(s)	186, 249, 592, 602, 860
DpnI	GATC	2 cut(s)	891, 974
DpnII	GATC	2 cut(s)	889, 972
DraI	TTTAAA	1 cut(s)	99
DrdI	GACNNNNNNGTC	1 cut(s)	624
DseDI	GACNNNNNNGTC	1 cut(s)	624
EciI	GGCGGA	1 cut(s)	839
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	755
Eco147I	AGGCCT	1 cut(s)	662
Eco24I	GRGCYC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	41
Eco57I	CTGAAG	3 cut(s)	138, 339, 374
Eco81I	CCTNAGG	1 cut(s)	860
EcoICRI	GAGCTC	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	755
EcoT22I	ATGCAT	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	755
FaeI	CATG	5 cut(s)	109, 475, 542, 670, 998
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	5 cut(s)	105, 471, 538, 666, 994
FauNDI	CATATG	1 cut(s)	85
FokI	GGATG	7 cut(s)	150, 318, 595, 606, 772, 839, 878
FriOI	GRGCYC	1 cut(s)	43
FspBI	CTAG	2 cut(s)	419, 554
HaeIII	GGCC	3 cut(s)	191, 201, 662
HapII	CCGG	3 cut(s)	335, 387, 624
HgaI	GACGC	1 cut(s)	805
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	5 cut(s)	109, 475, 542, 670, 998
HincII	GTYRAC	1 cut(s)	629
HindII	GTYRAC	1 cut(s)	629
HindIII	AAGCTT	2 cut(s)	255, 356
HinfI	GANTC	3 cut(s)	550, 695, 764
HpaII	CCGG	3 cut(s)	335, 387, 624
Hpy166II	GTNNAC	2 cut(s)	629, 738
Hpy188I	TCNGA	6 cut(s)	118, 171, 354, 379, 769, 889
Hpy188III	TCNNGA	1 cut(s)	677
Hpy8I	GTNNAC	2 cut(s)	629, 738
HpyAV	CCTTC	2 cut(s)	113, 995
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	7 cut(s)	83, 163, 287, 372, 637, 738, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	5 cut(s)	186, 249, 592, 602, 860
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	109, 475, 542, 670, 998
Kzo9I	GATC	2 cut(s)	889, 972
LpnPI	CCDG	9 cut(s)	278, 312, 348, 400, 438, 511, 637, 793, 834
LweI	GCATC	3 cut(s)	172, 429, 856
MaeI	CTAG	2 cut(s)	419, 554
MaeII	ACGT	1 cut(s)	21
MalI	GATC	2 cut(s)	891, 974
MboI	GATC	2 cut(s)	889, 972
MboII	GAAGA	4 cut(s)	16, 158, 692, 939
MhlI	GDGCHC	3 cut(s)	43, 740, 812
MluCI	AATT	8 cut(s)	31, 288, 564, 685, 718, 785, 934, 941
MlyI	GAGTC	1 cut(s)	689
MmeI	TCCRAC	1 cut(s)	636
Mph1103I	ATGCAT	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	5 cut(s)	98, 431, 444, 567, 654
MspI	CCGG	3 cut(s)	335, 387, 624
MspR9I	CCNGG	2 cut(s)	387, 624
Mva1269I	GAATGC	2 cut(s)	396, 637
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	2 cut(s)	387, 624
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	2 cut(s)	889, 972
NlaIII	CATG	5 cut(s)	109, 475, 542, 670, 998
NlaIV	GGNNCC	1 cut(s)	297
NmeAIII	GCCGAG	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	165
NspI	RCATGY	2 cut(s)	475, 670
PaeI	GCATGC	1 cut(s)	475
PceI	AGGCCT	1 cut(s)	662
PciI	ACATGT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	803
PctI	GAATGC	2 cut(s)	396, 637
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	550, 764
PflMI	CCANNNNNTGG	1 cut(s)	937
PleI	GAGTC	1 cut(s)	689
PpsI	GAGTC	1 cut(s)	689
PscI	ACATGT	1 cut(s)	666
PsiI	TTATAA	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	200
PsrI	GAACNNNNNNTAC	2 cut(s)	306, 338
RsaI	GTAC	4 cut(s)	228, 303, 607, 647
RsaNI	GTAC	4 cut(s)	227, 302, 606, 646
SacI	GAGCTC	1 cut(s)	43
SaqAI	TTAA	5 cut(s)	98, 431, 444, 567, 654
Sau3AI	GATC	2 cut(s)	889, 972
Sau96I	GGNCC	1 cut(s)	200
ScaI	AGTACT	2 cut(s)	228, 303
SchI	GAGTC	1 cut(s)	689
ScrFI	CCNGG	2 cut(s)	387, 624
SduI	GDGCHC	3 cut(s)	43, 740, 812
SfaNI	GCATC	3 cut(s)	172, 429, 856
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	418
SphI	GCATGC	1 cut(s)	475
Sse9I	AATT	8 cut(s)	31, 288, 564, 685, 718, 785, 934, 941
SseBI	AGGCCT	1 cut(s)	662
SsiI	CCGC	2 cut(s)	25, 824
SspMI	CTAG	2 cut(s)	419, 554
SstI	GAGCTC	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	662
StyD4I	CCNGG	2 cut(s)	385, 622
StyI	CCWWGG	1 cut(s)	755
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	806
TasI	AATT	8 cut(s)	31, 288, 564, 685, 718, 785, 934, 941
TatI	WGTACW	3 cut(s)	226, 301, 605
TfiI	GAWTC	2 cut(s)	550, 764
Tru1I	TTAA	5 cut(s)	98, 431, 444, 567, 654
Tru9I	TTAA	5 cut(s)	98, 431, 444, 567, 654
TscAI	CASTG	1 cut(s)	825
TspDTI	ATGAA	3 cut(s)	17, 102, 527
TspRI	CASTG	1 cut(s)	825
Van91I	CCANNNNNTGG	1 cut(s)	937
VneI	GTGCAC	1 cut(s)	736
XapI	RAATTY	3 cut(s)	685, 718, 785
XceI	RCATGY	2 cut(s)	475, 670
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	2 cut(s)	419, 554
ZraI	GACGTC	1 cut(s)	22
ZrmI	AGTACT	2 cut(s)	228, 303
Zsp2I	ATGCAT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.