AT4G14590

Integrator complex subunit 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004459
Physical Location & Seq
Forward (+)
8374391 .. 8376353
1963 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14590.1

Sequence Viewer

Length: 1527 bp
ATGGAGAACCACTTTGTTACATCGAAACTGATCCGTGTCTCTCTACACGAAGTTGAGAACCAGCTCGAACTATCACTACGTCAAGCCTTCGAGAATCTCCAGCCGAAACTACGACCACCGTTCTCCTTAGAACTCCCAGACCCACAAGAGTATCTTGAGCTCAATAAAGCCATCGTCTATGGAGTTTTATGCGAACCAAATTCCTCTAAAACCCACATCAAGCACTTACATGCTCTCGTCACTGATGGGTACGCGTTTTTCACTAGTTTACTTATTGGAATCGTTGTTGAATTGTATGTTAAGCTTGTTGATTCCGCTAAGATTCAGCTTATTTGGGTAACTAAGGAGATGATTGATGTTTCAAGTGTGGGGATTGAGGATTTGGTTGTGTCGTTGTTGCGACGAATTGGAATTAGTTTGTTTCTTGAGAAATGGGAATGCTTGCTTGATGATTCTCCATTGGTGTTGACTAGTGCTCTGTATAGTTTTCTTCGGTTATTAGCGGATCATTATAGGGTTTTAGGCGTTGTGAAACTGGAGAATGTGAAGAGATTGGAGATCAAATTCTGTGTTAAAATGTTTAGAGAGCAGCTTCATTTAAGTTTGAAGATTGGACGGGACCTTATCCTGTTGTTGCAGGATCTGTCTCATGTCTCTGAGTTCAGAGAGATATGGAACGATTTGGTGTCGAACCATTGCTCTGAGATATACCAGTTGAAGACTTCTAGTAGATACTTCCTTCTTCGAATCACTCCTGAGATGGAAACACAATTAAGGTTTTTGCTAGGAAATGTTAAATTGGGAAGTCATAAGCGGCATCAGATATGGTTCTTGAAGAAGTTTCTTTTGGGTCCGGAGAAAGAAACACTTTTGATAGATATAGTGAGATTCGTTTGCTGTGTTATTCATCCAACTAACGAAATCATCAGATCAGAGATCATGCCAAGATGGGCTATTATAGGTTGGCTTTTGGAACTGTGTAGGCAAAATCATCACATCGAGCGAAGCGTTATGCTGGCTCTGTTTTACGACTGGCTCTTCTTTGACGAAAGAATCGATAATATTATGAATGTTGAACCTGCTGCTCTCTTGATGGTATGGTCAATACCGCAGTATCCACACATCACTCACTCCTTACTTGAATTCTTACTTCATCTTGTCGAAACTTATGACATAACCCGTCGCGATACGATTGTAAGAGGTTTGACGTCAGCATTCAGAGAAATTGAGCGAAAAGGAGTTATTCGGTCGCTGGATATATTCCTAGCAAATCCTGCACTTGCACCAGATTTGAAGAAGAAGCTAGCAAATCTGTTGTCATGTCATCAGGAGAAGACGGTTCATGTGAATCTCAATCAAGTTAGTGTTCTTTCTAAGCAAACAGTTCTTTCTTCGGAAGCTAATTTAAAAGATTGCAGCACCAAAATTGTTGATACTCCTGACCAGAAGTTGGACAATTCCGTTGAAAATCCAGCAAAAAACCATAAGGTTGAACTGTTCAAAGAGTTTATAAGACCCTCACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

508

Amino Acids

59.03

Weight (kDa)

7.05

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 49 - 436 2.3e-141 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1511
AatII GACGTC 1 cut(s) 1211
Acc36I ACCTGC 1 cut(s) 1087
AccB7I CCANNNNNTGG 1 cut(s) 1450
AccII CGCG 2 cut(s) 254, 1185
AccIII TCCGGA 1 cut(s) 853
AciI CCGC 4 cut(s) 315, 503, 814, 1109
AclWI GGATC 3 cut(s) 25, 513, 648
AcsI RAATTY 3 cut(s) 199, 563, 1142
AcyI GRCGYC 1 cut(s) 1208
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 1450
AflIII ACRYGT 1 cut(s) 252
AhlI ACTAGT 2 cut(s) 263, 470
AjuI GAANNNNNNNTTGG 2 cut(s) 830, 862
AluBI AGCT 7 cut(s) 64, 160, 304, 328, 592, 1303, 1400
AluI AGCT 7 cut(s) 64, 160, 304, 328, 592, 1303, 1400
Alw21I GWGCWC 2 cut(s) 162, 478
Alw26I GTCTC 3 cut(s) 43, 651, 658
AlwI GGATC 3 cut(s) 25, 513, 648
AlwNI CAGNNNCTG 1 cut(s) 643
Aor13HI TCCGGA 1 cut(s) 853
ApeKI GCWGC 3 cut(s) 589, 1082, 1416
ApoI RAATTY 3 cut(s) 199, 563, 1142
ArsI GACNNNNNNTTYG 2 cut(s) 1301, 1333
AspS9I GGNCC 2 cut(s) 619, 851
AsuII TTCGAA 1 cut(s) 745
AsuNHI GCTAGC 1 cut(s) 1303
AvaII GGWCC 2 cut(s) 619, 851
BaeI ACNNNNGTAYC 6 cut(s) 134, 167, 1097, 1130, 1179, 1212
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 2 cut(s) 725, 1340
Bbv12I GWGCWC 2 cut(s) 162, 478
BbvI GCAGC 3 cut(s) 601, 1069, 1428
BccI CCATC 5 cut(s) 179, 239, 754, 942, 1087
BciVI GTATCC 1 cut(s) 1125
BcoDI GTCTC 3 cut(s) 43, 651, 658
BcuI ACTAGT 2 cut(s) 263, 470
BfaI CTAG 6 cut(s) 264, 471, 726, 785, 1265, 1304
BfuAI ACCTGC 1 cut(s) 1087
BfuI GTATCC 1 cut(s) 1125
BisI GCNGC 4 cut(s) 590, 815, 1083, 1417
BlsI GCNGC 4 cut(s) 591, 816, 1084, 1418
Bme18I GGWCC 2 cut(s) 619, 851
BmgT120I GGNCC 2 cut(s) 619, 851
BmiI GGNNCC 2 cut(s) 620, 852
BmsI GCATC 1 cut(s) 826
BmtI GCTAGC 1 cut(s) 1307
BpiI GAAGAC 2 cut(s) 725, 1340
BpmI CTGGAG 2 cut(s) 83, 557
Bpu14I TTCGAA 1 cut(s) 745
BpuEI CTTGAG 2 cut(s) 176, 446
Bsa29I ATCGAT 1 cut(s) 1056
BsaHI GRCGYC 1 cut(s) 1208
BsaWI WCCGGW 1 cut(s) 853
Bsc4I CCNNNNNNNGG 1 cut(s) 1450
Bse1I ACTGG 3 cut(s) 540, 712, 1037
Bse3DI GCAATG 1 cut(s) 694
BseAI TCCGGA 1 cut(s) 853
BseCI ATCGAT 1 cut(s) 1056
BseGI GGATG 1 cut(s) 907
BseLI CCNNNNNNNGG 1 cut(s) 1450
BseMI GCAATG 1 cut(s) 694
BseMII CTCAG 3 cut(s) 648, 693, 747
BseNI ACTGG 3 cut(s) 540, 712, 1037
BseXI GCAGC 3 cut(s) 601, 1069, 1428
BsgI GTGCAG 1 cut(s) 1260
Bsh1236I CGCG 2 cut(s) 254, 1185
Bsh1285I CGRYCG 1 cut(s) 1250
BshVI ATCGAT 1 cut(s) 1056
BsiEI CGRYCG 1 cut(s) 1250
BsiHKAI GWGCWC 2 cut(s) 162, 478
BsiSI CCGG 1 cut(s) 854
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 1 cut(s) 1450
BsmAI GTCTC 3 cut(s) 43, 651, 658
BsmFI GGGAC 1 cut(s) 632
BsmI GAATGC 2 cut(s) 443, 1214
Bsp119I TTCGAA 1 cut(s) 745
Bsp1286I GDGCHC 2 cut(s) 162, 478
Bsp13I TCCGGA 1 cut(s) 853
Bsp143I GATC 6 cut(s) 30, 505, 558, 640, 929, 936
Bsp68I TCGCGA 1 cut(s) 1185
BspACI CCGC 4 cut(s) 315, 503, 814, 1109
BspCNI CTCAG 3 cut(s) 649, 694, 748
BspDI ATCGAT 1 cut(s) 1056
BspEI TCCGGA 1 cut(s) 853
BspFNI CGCG 2 cut(s) 254, 1185
BspLI GGNNCC 2 cut(s) 620, 852
BspMI ACCTGC 1 cut(s) 1087
BspOI GCTAGC 1 cut(s) 1307
BspPI GGATC 3 cut(s) 25, 513, 648
BspQI GCTCTTC 1 cut(s) 1043
BspT104I TTCGAA 1 cut(s) 745
BsrDI GCAATG 1 cut(s) 694
BsrI ACTGG 3 cut(s) 540, 712, 1037
BssMI GATC 6 cut(s) 30, 505, 558, 640, 929, 936
BssNI GRCGYC 1 cut(s) 1208
Bst4CI ACNGT 6 cut(s) 120, 978, 1339, 1384, 1497, 1524
Bst6I CTCTTC 2 cut(s) 542, 1043
BstACI GRCGYC 1 cut(s) 1208
BstAPI GCANNNNNTGC 1 cut(s) 1274
BstBI TTCGAA 1 cut(s) 745
BstC8I GCNNGC 3 cut(s) 443, 1017, 1305
BstDEI CTNAG 7 cut(s) 127, 318, 342, 657, 702, 756, 1374
BstF5I GGATG 1 cut(s) 907
BstFNI CGCG 2 cut(s) 254, 1185
BstKTI GATC 6 cut(s) 33, 508, 561, 643, 932, 939
BstMAI GTCTC 3 cut(s) 43, 651, 658
BstMBI GATC 6 cut(s) 30, 505, 558, 640, 929, 936
BstMCI CGRYCG 1 cut(s) 1250
BstMWI GCNNNNNNNGC 1 cut(s) 1274
BstNSI RCATGY 1 cut(s) 233
BstUI CGCG 2 cut(s) 254, 1185
BstV1I GCAGC 3 cut(s) 601, 1069, 1428
BstV2I GAAGAC 2 cut(s) 725, 1340
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
Bsu15I ATCGAT 1 cut(s) 1056
BsuI GTATCC 1 cut(s) 1125
BsuTUI ATCGAT 1 cut(s) 1056
BtsCI GGATG 1 cut(s) 907
BtsIMutI CAGTG 1 cut(s) 240
BtuMI TCGCGA 1 cut(s) 1185
BveI ACCTGC 1 cut(s) 1087
Cac8I GCNNGC 3 cut(s) 443, 1017, 1305
CaiI CAGNNNCTG 1 cut(s) 643
Cfr13I GGNCC 2 cut(s) 619, 851
ClaI ATCGAT 1 cut(s) 1056
Csp6I GTAC 1 cut(s) 250
CviAII CATG 5 cut(s) 230, 650, 940, 1320, 1343
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 7 cut(s) 127, 318, 342, 657, 702, 756, 1374
DpnI GATC 6 cut(s) 32, 507, 560, 642, 931, 938
DpnII GATC 6 cut(s) 30, 505, 558, 640, 929, 936
DraI TTTAAA 1 cut(s) 1407
Eam1104I CTCTTC 2 cut(s) 542, 1043
EarI CTCTTC 2 cut(s) 542, 1043
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 619, 851
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 619
EcoRI GAATTC 1 cut(s) 1142
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 5 cut(s) 233, 653, 943, 1323, 1346
FalI AAGNNNNNCTT 4 cut(s) 138, 170, 852, 884
FaqI GGGAC 1 cut(s) 632
FatI CATG 5 cut(s) 229, 649, 939, 1319, 1342
Fnu4HI GCNGC 4 cut(s) 590, 815, 1083, 1417
FokI GGATG 1 cut(s) 894
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 4 cut(s) 590, 815, 1083, 1417
FspBI CTAG 6 cut(s) 264, 471, 726, 785, 1265, 1304
GluI GCNGC 4 cut(s) 590, 815, 1083, 1417
GsuI CTGGAG 2 cut(s) 83, 557
HapII CCGG 1 cut(s) 854
Hin1I GRCGYC 1 cut(s) 1208
Hin1II CATG 5 cut(s) 233, 653, 943, 1323, 1346
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 9 cut(s) 94, 279, 311, 322, 452, 747, 888, 1053, 1348
HpaII CCGG 1 cut(s) 854
Hpy166II GTNNAC 2 cut(s) 269, 468
Hpy188I TCNGA 8 cut(s) 658, 665, 703, 822, 929, 934, 1220, 1396
Hpy8I GTNNAC 2 cut(s) 269, 468
Hpy99I CGWCG 2 cut(s) 405, 1185
HpyAV CCTTC 2 cut(s) 97, 749
HpyCH4III ACNGT 6 cut(s) 120, 978, 1339, 1384, 1497, 1524
HpyCH4IV ACGT 2 cut(s) 79, 1208
HpyCH4V TGCA 4 cut(s) 637, 1277, 1283, 1416
HpyF10VI GCNNNNNNNGC 1 cut(s) 1274
HpyF3I CTNAG 7 cut(s) 127, 318, 342, 657, 702, 756, 1374
HpySE526I ACGT 2 cut(s) 79, 1208
Hsp92I GRCGYC 1 cut(s) 1208
Hsp92II CATG 5 cut(s) 233, 653, 943, 1323, 1346
Kpn2I TCCGGA 1 cut(s) 853
Kzo9I GATC 6 cut(s) 30, 505, 558, 640, 929, 936
LguI GCTCTTC 1 cut(s) 1043
Lsp1109I GCAGC 3 cut(s) 601, 1069, 1428
LweI GCATC 1 cut(s) 826
MaeI CTAG 6 cut(s) 264, 471, 726, 785, 1265, 1304
MaeII ACGT 2 cut(s) 79, 1208
MaeIII GTNAC 3 cut(s) 16, 238, 337
MalI GATC 6 cut(s) 32, 507, 560, 642, 931, 938
MboI GATC 6 cut(s) 30, 505, 558, 640, 929, 936
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 2 cut(s) 162, 478
MluI ACGCGT 1 cut(s) 252
MmeI TCCRAC 2 cut(s) 935, 1431
MnlI CCTC 3 cut(s) 214, 370, 1193
MroI TCCGGA 1 cut(s) 853
MseI TTAA 6 cut(s) 300, 573, 599, 773, 795, 1406
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 1 cut(s) 854
Mva1269I GAATGC 2 cut(s) 443, 1214
MvnI CGCG 2 cut(s) 254, 1185
MwoI GCNNNNNNNGC 1 cut(s) 1274
NdeII GATC 6 cut(s) 30, 505, 558, 640, 929, 936
NheI GCTAGC 1 cut(s) 1303
NlaIII CATG 5 cut(s) 233, 653, 943, 1323, 1346
NlaIV GGNNCC 2 cut(s) 620, 852
NmuCI GTSAC 1 cut(s) 238
NruI TCGCGA 1 cut(s) 1185
NspI RCATGY 1 cut(s) 233
NspV TTCGAA 1 cut(s) 745
PciSI GCTCTTC 1 cut(s) 1043
PcsI WCGNNNNNNNCGW 2 cut(s) 1005, 1053
PctI GAATGC 2 cut(s) 443, 1214
PfeI GAWTC 9 cut(s) 94, 279, 311, 322, 452, 747, 888, 1053, 1348
PflMI CCANNNNNTGG 1 cut(s) 1450
PkrI GCNGC 4 cut(s) 591, 816, 1084, 1418
PpuMI RGGWCCY 1 cut(s) 619
PsiI TTATAA 1 cut(s) 1511
Psp124BI GAGCTC 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 619
PspN4I GGNNCC 2 cut(s) 620, 852
PspPI GGNCC 2 cut(s) 619, 851
PspPPI RGGWCCY 1 cut(s) 619
PsrI GAACNNNNNNTAC 2 cut(s) 60, 92
PstNI CAGNNNCTG 1 cut(s) 643
PsuI RGATCY 1 cut(s) 640
RruI TCGCGA 1 cut(s) 1185
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 228
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 1043
SaqAI TTAA 6 cut(s) 300, 573, 599, 773, 795, 1406
SatI GCNGC 4 cut(s) 590, 815, 1083, 1417
Sau3AI GATC 6 cut(s) 30, 505, 558, 640, 929, 936
Sau96I GGNCC 2 cut(s) 619, 851
SduI GDGCHC 2 cut(s) 162, 478
SfaNI GCATC 1 cut(s) 826
SfuI TTCGAA 1 cut(s) 745
SinI GGWCC 2 cut(s) 619, 851
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 2 cut(s) 155, 425
SmoI CTYRAG 2 cut(s) 155, 425
SpeI ACTAGT 2 cut(s) 263, 470
SsiI CCGC 4 cut(s) 315, 503, 814, 1109
SspI AATATT 1 cut(s) 1063
SspMI CTAG 6 cut(s) 264, 471, 726, 785, 1265, 1304
SstI GAGCTC 1 cut(s) 162
TaaI ACNGT 6 cut(s) 120, 978, 1339, 1384, 1497, 1524
TaiI ACGT 2 cut(s) 82, 1211
TaqI TCGA 8 cut(s) 23, 66, 90, 689, 745, 999, 1056, 1161
TaqII GACCGA 1 cut(s) 1236
TauI GCSGC 1 cut(s) 817
TfiI GAWTC 9 cut(s) 94, 279, 311, 322, 452, 747, 888, 1053, 1348
Tru1I TTAA 6 cut(s) 300, 573, 599, 773, 795, 1406
Tru9I TTAA 6 cut(s) 300, 573, 599, 773, 795, 1406
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 3 cut(s) 589, 1082, 1416
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 5 cut(s) 584, 896, 1082, 1142, 1331
TspGWI ACGGA 2 cut(s) 23, 1450
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 1450
VpaK11BI GGWCC 2 cut(s) 619, 851
XapI RAATTY 3 cut(s) 199, 563, 1142
XceI RCATGY 1 cut(s) 233
XspI CTAG 6 cut(s) 264, 471, 726, 785, 1265, 1304
ZraI GACGTC 1 cut(s) 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.