Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004459

Physical Location & Seq

Genomic Coordinates Reverse (-)

47042798 .. 47046662

Gene Structure 3865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G578000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGCTTTGAAACTAATGCAAATCGCTCCCCATGAAGCCGAAGACCCAACAGAGCTCTCTCTGAGGCAAGCCTTTGAGCTTCTTGAACCAAAACTAAGACCCCCGTTTTCATTAACGATTCCAAAGCCACAAGAATACTCGCTGCTCAACAAAGCGATACTTTATGGAGTTTTATATGAATGCCATTTGGGAAAAACACATATTAAGCACTTGCATGCCATTGTCACTGATGGGTATGGCTTGTTTGTTAGTTTCCTCACCAAGGTTGTGAATGAATTGTATGTGAAACTTCTTGAACCACTAAAGTGCCAACTGATTTGGGTTACTAAGGAGTTGATTGATGTTCTAGCAGTAGGCGTTGATGGTTTGTTGGTTTGTTTGTTGAGACAAATTGTTGGTGGGGATTTTAGTGATGGAAATTTGTGGCTGTGTTTTGAGATGGTGAACATACTTTTGACCAAATGGGATTGTCTTTTAGAAGTAGAATCGATGATCTTGACGAGTGGGTTGTATACATATCTTCGGTTATTAGCTGATCACTGTAGGCAGTTAAGTAATCCAAAATTAGAGGCGTTAAAGCAATTGGAGATTGACTTTTGTATTAAAGTTTTAAAGGAGCAGTTTCCTTTGTGTTTGAAGATTGGCAGGGATCTTGTTCGACTCCTACAAGATTTGGTCCATTTACCCAAATTTAGAGCTATATGGAAGGATTTAGTACTGAACCAGGGTGAGTTTAAGAGTCTGGGATTTTCTGGTATTGCACAGCTCTATATCACAAGGACTCCAAGTCAGTATATGTTACTTCGGATTACTCCAGAAATGGAGGCGCAGTTGAGATTTTTACTCACGCATGTGAAGTTGGGGAGTCATAAGCGTCACCAGGCATGGTTTGCCAAAAAGTTTCTATGTAAGCCAAACAGAGAGACTGTCATAGTCGACATTGTTCGTTTTATATGTTGTGCACACCACCCGCCAAATGAAATTATTCAGTCAGATGTCATTCCAAGATGGGCTGTTATAGGTTGGCTATTGAAATCTTGTACGAAGAATTATGTTGAGGCTAATGCGAAACTGGCTCTACTTTATGATTGGCTATTCTTTGAAGAAAGAGTAGACAATATTATGAATATTGAACCTGCAATGTTGTTAATGGTATACTCTATACCCAGATACATTGATATAACACACACTCTTCTCGAATTTCTGTTCCTTTTGATGGACAACTATGATGCGGAACATTATGATATCTTAGTTAAAGGTGTGTCATCATCATTTAGTGTATGTGTAAAGAAAGGAGTGATCCGTTCACTTGATGTCTTGACCTCTTGTGATGCACTGTCTCCTATATTGAAAGAGAGGCTTTGTAGGTTTTTGTTAGGTACAAAATTTGAAATCTCTGGAAAGTTGAAACAAGCTCGTCTTCCCGGTCACTTTGAGAGAGTGAAAAATTCTACCTGTATGGAAACTCCAACACCATCACCAGAAAGCATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ints3

Protein Analysis

499

Amino Acids

57.27

Weight (kDa)

8.23

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14590
fragaria_vesca	FvH4_3g28960
malus_domestica	MD00G1154100.v1.1 MD11G1194100.v1.1 MD15G1397300.v1.1
prunus_persica	Prupe.1G578000_v2.0.a1
pyrus_communis	pycom11g16260 pycom15g35700
rosa_chinensis	RchiOBHm_Chr2g0127281 RchiOBHm_Chr6g0255981 RchiOBHm_Chr6g0267091
rosa_laevigata	RLG00000014039 RLG00000014796 RLG00000034863
rosa_multiflora	Rmu_sc0002938.1_g000050 Rmu_sc0004659.1_g000003 Rmu_ssc0000388.1_g000011
rosa_roxburghii	Rroxscaffold_2G00116300 Rroxscaffold_7G00201030
rosa_rugosa	Rorug02G0275800
rosa_samantha	Rh2BG336100 Rh2DG353800 Rh5CG385400 Rh6AG150700 Rh6BG074000 Rh6BG151500 Rh6CG147100 Rh6DG135600
rosa_wichuraiana	Rw0G004690 Rw2G026530 Rw5G032980 Rw6G013060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1144
AccI	GTMKAC	4 cut(s)	512, 936, 1113, 1155
AciI	CCGC	2 cut(s)	971, 1232
AclWI	GGATC	2 cut(s)	657, 1294
AcsI	RAATTY	5 cut(s)	418, 689, 1199, 1385, 1447
AfaI	GTAC	3 cut(s)	717, 1042, 1381
AfiI	CCNNNNNNNGG	2 cut(s)	262, 1216
AhdI	GACNNNNNGTC	1 cut(s)	786
AjnI	CCWGG	2 cut(s)	723, 879
AleI	CACNNNNGTG	2 cut(s)	304, 851
AluBI	AGCT	6 cut(s)	55, 79, 533, 698, 766, 1415
AluI	AGCT	6 cut(s)	55, 79, 533, 698, 766, 1415
Alw21I	GWGCWC	2 cut(s)	57, 964
Alw26I	GTCTC	3 cut(s)	379, 917, 1344
Alw44I	GTGCAC	1 cut(s)	960
AlwI	GGATC	2 cut(s)	657, 1294
ApaLI	GTGCAC	1 cut(s)	960
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	5 cut(s)	418, 689, 1199, 1385, 1447
Asp700I	GAANNNNTTC	1 cut(s)	984
AspLEI	GCGC	1 cut(s)	829
AspS9I	GGNCC	1 cut(s)	676
AsuC2I	CCSGG	1 cut(s)	1425
AsuHPI	GGTGA	5 cut(s)	250, 454, 740, 869, 1470
AvaII	GGWCC	1 cut(s)	676
BaeGI	GKGCMC	1 cut(s)	964
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	2 cut(s)	48, 1412
Bbv12I	GWGCWC	2 cut(s)	57, 964
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	7 cut(s)	224, 356, 407, 433, 1002, 1210, 1483
BciT130I	CCWGG	2 cut(s)	725, 881
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	1425
BcoDI	GTCTC	3 cut(s)	379, 917, 1344
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	541
BfuAI	ACCTGC	1 cut(s)	1144
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
BmcAI	AGTACT	1 cut(s)	717
Bme1390I	CCNGG	3 cut(s)	725, 881, 1425
Bme18I	GGWCC	1 cut(s)	676
BmeRI	GACNNNNNGTC	1 cut(s)	786
BmgT120I	GGNCC	1 cut(s)	676
BmrFI	CCNGG	3 cut(s)	725, 881, 1425
BmsI	GCATC	2 cut(s)	1219, 1321
BpiI	GAAGAC	2 cut(s)	48, 1412
BpmI	CTGGAG	1 cut(s)	798
BpuMI	CCSGG	1 cut(s)	1425
Bsa29I	ATCGAT	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	261, 724
BsaXI	ACNNNNNCTCC	4 cut(s)	766, 796, 815, 845
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 1216
Bse1I	ACTGG	1 cut(s)	1077
Bse3DI	GCAATG	1 cut(s)	1146
BseBI	CCWGG	2 cut(s)	725, 881
BseCI	ATCGAT	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	261, 724
BseLI	CCNNNNNNNGG	2 cut(s)	262, 1216
BseMI	GCAATG	1 cut(s)	1146
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	1077
BseSI	GKGCMC	1 cut(s)	964
BseXI	GCAGC	1 cut(s)	129
BshVI	ATCGAT	1 cut(s)	488
BsiHKAI	GWGCWC	2 cut(s)	57, 964
BsiSI	CCGG	1 cut(s)	1425
BslI	CCNNNNNNNGG	2 cut(s)	262, 1216
BsmAI	GTCTC	3 cut(s)	379, 917, 1344
BsmI	GAATGC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	57, 964
Bsp143I	GATC	4 cut(s)	492, 535, 649, 1299
BspACI	CCGC	2 cut(s)	971, 1232
BspCNI	CTCAG	1 cut(s)	54
BspDI	ATCGAT	1 cut(s)	488
BspMI	ACCTGC	1 cut(s)	1144
BspPI	GGATC	2 cut(s)	657, 1294
BsrDI	GCAATG	1 cut(s)	1146
BsrI	ACTGG	1 cut(s)	1077
BssECI	CCNNGG	2 cut(s)	261, 724
BssMI	GATC	4 cut(s)	492, 535, 649, 1299
BssNAI	GTATAC	2 cut(s)	513, 1156
BssT1I	CCWWGG	1 cut(s)	261
Bst1107I	GTATAC	2 cut(s)	513, 1156
Bst2UI	CCWGG	2 cut(s)	725, 881
Bst4CI	ACNGT	3 cut(s)	542, 928, 1338
Bst6I	CTCTTC	1 cut(s)	1197
BstAPI	GCANNNNNTGC	1 cut(s)	890
BstC8I	GCNNGC	2 cut(s)	69, 216
BstDEI	CTNAG	4 cut(s)	62, 95, 327, 1249
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	829
BstKTI	GATC	4 cut(s)	495, 538, 652, 1302
BstMAI	GTCTC	3 cut(s)	379, 917, 1344
BstMBI	GATC	4 cut(s)	492, 535, 649, 1299
BstMWI	GCNNNNNNNGC	2 cut(s)	890, 1073
BstNI	CCWGG	2 cut(s)	725, 881
BstNSI	RCATGY	2 cut(s)	218, 854
BstSCI	CCNGG	3 cut(s)	723, 879, 1423
BstSFI	CTRYAG	1 cut(s)	541
BstSLI	GKGCMC	1 cut(s)	964
BstV1I	GCAGC	1 cut(s)	129
BstV2I	GAAGAC	2 cut(s)	48, 1412
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BstZ17I	GTATAC	2 cut(s)	513, 1156
Bsu15I	ATCGAT	1 cut(s)	488
BsuTUI	ATCGAT	1 cut(s)	488
BtsIMutI	CAGTG	3 cut(s)	225, 538, 1334
BveI	ACCTGC	1 cut(s)	1144
Cac8I	GCNNGC	2 cut(s)	69, 216
CfoI	GCGC	1 cut(s)	829
Cfr13I	GGNCC	1 cut(s)	676
ClaI	ATCGAT	1 cut(s)	488
CseI	GACGC	1 cut(s)	863
Csp6I	GTAC	3 cut(s)	716, 1041, 1380
CviAII	CATG	5 cut(s)	32, 215, 851, 885, 1489
CviQI	GTAC	3 cut(s)	716, 1041, 1380
DdeI	CTNAG	4 cut(s)	62, 95, 327, 1249
DpnI	GATC	4 cut(s)	494, 537, 651, 1301
DpnII	GATC	4 cut(s)	492, 535, 649, 1299
DraI	TTTAAA	1 cut(s)	612
DriI	GACNNNNNGTC	1 cut(s)	786
Eam1104I	CTCTTC	1 cut(s)	1197
Eam1105I	GACNNNNNGTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	1197
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	1246
Eco47I	GGWCC	1 cut(s)	676
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	723, 879
EcoRV	GATATC	1 cut(s)	1246
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	5 cut(s)	35, 218, 854, 888, 1492
FalI	AAGNNNNNCTT	6 cut(s)	144, 176, 1344, 1376, 1404, 1436
FatI	CATG	5 cut(s)	31, 214, 850, 884, 1488
FauI	CCCGC	1 cut(s)	978
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	4 cut(s)	512, 936, 1113, 1155
Fnu4HI	GCNGC	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	828
GluI	GCNGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	798
HapII	CCGG	1 cut(s)	1425
HgaI	GACGC	1 cut(s)	863
HhaI	GCGC	1 cut(s)	829
Hin1II	CATG	5 cut(s)	35, 218, 854, 888, 1492
Hin6I	GCGC	1 cut(s)	827
HinP1I	GCGC	1 cut(s)	827
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HinfI	GANTC	6 cut(s)	118, 485, 660, 739, 781, 865
HpaII	CCGG	1 cut(s)	1425
HphI	GGTGA	5 cut(s)	250, 454, 740, 869, 1470
Hpy166II	GTNNAC	7 cut(s)	445, 513, 937, 962, 1114, 1156, 1307
Hpy188I	TCNGA	3 cut(s)	63, 807, 994
Hpy188III	TCNNGA	7 cut(s)	83, 293, 496, 815, 1196, 1318, 1398
Hpy8I	GTNNAC	7 cut(s)	445, 513, 937, 962, 1114, 1156, 1307
HpyAV	CCTTC	1 cut(s)	700
HpyCH4III	ACNGT	3 cut(s)	542, 928, 1338
HpyCH4V	TGCA	6 cut(s)	19, 214, 761, 962, 1139, 1334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	890, 1073
HpyF3I	CTNAG	4 cut(s)	62, 95, 327, 1249
Hsp92II	CATG	5 cut(s)	35, 218, 854, 888, 1492
HspAI	GCGC	1 cut(s)	827
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	492, 535, 649, 1299
LmnI	GCTCC	2 cut(s)	31, 616
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	2 cut(s)	1219, 1321
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	5 cut(s)	223, 322, 798, 875, 1427
MalI	GATC	4 cut(s)	494, 537, 651, 1301
MboI	GATC	4 cut(s)	492, 535, 649, 1299
MboII	GAAGA	7 cut(s)	53, 512, 649, 1057, 1115, 1184, 1412
MfeI	CAATTG	1 cut(s)	581
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	2 cut(s)	57, 964
MlyI	GAGTC	4 cut(s)	654, 748, 775, 874
MmeI	TCCRAC	1 cut(s)	1493
MnlI	CCTC	7 cut(s)	57, 266, 562, 817, 1051, 1333, 1350
MroXI	GAANNNNTTC	1 cut(s)	984
MseI	TTAA	9 cut(s)	113, 204, 551, 575, 603, 611, 735, 1148, 1254
MslI	CAYNNNNRTG	3 cut(s)	213, 304, 851
MspI	CCGG	1 cut(s)	1425
MspR9I	CCNGG	3 cut(s)	725, 881, 1425
MunI	CAATTG	1 cut(s)	581
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	2 cut(s)	725, 881
MwoI	GCNNNNNNNGC	2 cut(s)	890, 1073
NciI	CCSGG	1 cut(s)	1425
NdeII	GATC	4 cut(s)	492, 535, 649, 1299
NlaIII	CATG	5 cut(s)	35, 218, 854, 888, 1492
NmuCI	GTSAC	3 cut(s)	223, 875, 1427
NspI	RCATGY	2 cut(s)	218, 854
OliI	CACNNNNGTG	2 cut(s)	304, 851
PaeI	GCATGC	1 cut(s)	218
PctI	GAATGC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	984
PfeI	GAWTC	2 cut(s)	118, 485
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	4 cut(s)	654, 747, 775, 873
PpsI	GAGTC	4 cut(s)	654, 747, 775, 873
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	2 cut(s)	723, 879
PspGI	CCWGG	2 cut(s)	723, 879
PspPI	GGNCC	1 cut(s)	676
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	3 cut(s)	717, 1042, 1381
RsaNI	GTAC	3 cut(s)	716, 1041, 1380
RseI	CAYNNNNRTG	3 cut(s)	213, 304, 851
SacI	GAGCTC	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	935
SaqAI	TTAA	9 cut(s)	113, 204, 551, 575, 603, 611, 735, 1148, 1254
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	4 cut(s)	492, 535, 649, 1299
Sau96I	GGNCC	1 cut(s)	676
ScaI	AGTACT	1 cut(s)	717
SchI	GAGTC	4 cut(s)	654, 748, 775, 874
ScrFI	CCNGG	3 cut(s)	725, 881, 1425
SduI	GDGCHC	2 cut(s)	57, 964
SfaNI	GCATC	2 cut(s)	1219, 1321
SfcI	CTRYAG	1 cut(s)	541
SinI	GGWCC	1 cut(s)	676
SmiMI	CAYNNNNRTG	3 cut(s)	213, 304, 851
SphI	GCATGC	1 cut(s)	218
SsiI	CCGC	2 cut(s)	971, 1232
SspI	AATATT	2 cut(s)	1120, 1129
SspMI	CTAG	1 cut(s)	347
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	3 cut(s)	723, 879, 1423
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	3 cut(s)	542, 928, 1338
TaqI	TCGA	4 cut(s)	488, 658, 936, 1197
TatI	WGTACW	1 cut(s)	715
TfiI	GAWTC	2 cut(s)	118, 485
Tru1I	TTAA	9 cut(s)	113, 204, 551, 575, 603, 611, 735, 1148, 1254
Tru9I	TTAA	9 cut(s)	113, 204, 551, 575, 603, 611, 735, 1148, 1254
TscAI	CASTG	3 cut(s)	232, 545, 1341
TseFI	GTSAC	3 cut(s)	223, 875, 1427
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	3 cut(s)	223, 875, 1427
TspDTI	ATGAA	6 cut(s)	48, 99, 192, 288, 993, 1139
TspGWI	ACGGA	1 cut(s)	1292
TspRI	CASTG	3 cut(s)	232, 545, 1341
VneI	GTGCAC	1 cut(s)	960
VpaK11BI	GGWCC	1 cut(s)	676
XagI	CCTNNNNNAGG	1 cut(s)	260
XapI	RAATTY	5 cut(s)	418, 689, 1199, 1385, 1447
XceI	RCATGY	2 cut(s)	218, 854
XmiI	GTMKAC	4 cut(s)	512, 936, 1113, 1155
XmnI	GAANNNNTTC	1 cut(s)	984
XspI	CTAG	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.