RLG00000014796

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004459
Physical Location & Seq
Reverse (-)
57627035 .. 57628542
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014796

Sequence Viewer

Length: 1416 bp
ATGACTTTAAACCTGATTCGGATTGTTTCCCATGAAGCTGAAAACCCCGTGGGCTGCTCTCTGAAGGAGGCCTTTGAGCTCCTTGAACCAAAACTAAGACCCCCATTGGCAATAACAATCCCAACCCCACAGGAATACTTGCTGCTCAACAAGGCTATTTTTTTGATTGCTAAGGTTGTGAATGAATTGTACATGAAACTTGTTGACCCGGTGAAATGCCAGTTTATTTGGGTTACTAAGGAGATGATTGATGTTCAGGCTGTAGGCATCCATGGTTTGTTGGTTTGTTTTCTGAGGCAAATTGTTGGTGGGGATTTTAGTGATGGAAATTTGTGGTTGTGTTTTGAGATCGTGAGCATGTTTTTGACCAAATGGGATTCTCTCTTGGAAGTAGAACCAATGATTTTGACCAGTGGATTGTATACATATCTTTCGCTACTAGCTGATCACTATAGATTGCAAAGTAATCCAAAGTTGGAAGCGGTAAAGCAATTGGAAATTGATTTCTGCATTAAAGTGTTAAGGGAGCAGTTTTCTGTCTGTTTAAAGATTGGGAGGGATCTTGTTCGGCTCCTACAAGATGTGGTTCATATACCAAACTTTAGAGCTACGTGGAAAGATCTGGTATTGAATCAAGGCAAGTTTAAGACTCCTGGTTTTTCTGTTATTTCGCAGCTCTATAACACAAGGACTTCAAGTCAGTATATTTTACTTCGGATTTCACCAGAAATGGAGACACAGTTGCGATTTTTACGTACTTGCGTGAAGTTAGGGAGTCAAAAGCGTTACCAGGCATGGTTTGCTAAGAAGTTTCTATGTGCACCAAACAGAGAGACTTCGATAGTTGACATTGTCCGTTTTATATGTTGTGCACACCACCCACCAAATGAAATCATACAATCAGATATCATTCCAAGATGGGCTGTTGTAGGTTGGCTATTGAAATATTGCACAAAGAATTATGTCCAAGCCAATGTGAAACTAGCTCTACTTTATGATTGGCTATTCTTTGATGAAAGAGTAGATAATATAATGAATATTGAGCCTGCAATGCTACTGATGGTGTACTTTATACCCAGATACATTGATGTGACTCGCACACTTCTGGAGTTTTTGTTCCTTCTTGTGGACACTTATGATGTGGAACATAAAGATATAATTATTAGAGGCGTGTCTTCATCTCTTCGTGTACTTGTCAAGAAAGGAGTGATTCGCTCCCTTGATGTGTTGACATCTTGTGATGCACTTTCTCCTGTCTTGAAAGAGAGGCTTGATAGGTTTTTGTTAGGTGCGGAATTGGAAATTTCTAAAGGCTGGAACAAACTAGATATCCCAGCCCTTTTGCTTTGGAGAATTCCTCTTGTATGGGAACTCCGACTCCATCACCAGAACGTGAACAAGATAGATTTGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

472

Amino Acids

54.61

Weight (kDa)

8.48

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 52 - 424 1.2e-137 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 422
AciI CCGC 2 cut(s) 482, 1292
AclWI GGATC 1 cut(s) 567
AcsI RAATTY 3 cut(s) 328, 1302, 1353
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 4 cut(s) 191, 757, 1067, 1191
AfiI CCNNNNNNNGG 1 cut(s) 1126
AgsI TTSAA 5 cut(s) 86, 631, 696, 943, 1261
AhdI GACNNNNNGTC 1 cut(s) 696
AjnI CCWGG 2 cut(s) 652, 789
AloI GAACNNNNNNTCC 4 cut(s) 1100, 1132, 1362, 1394
AluBI AGCT 6 cut(s) 38, 79, 443, 608, 676, 986
AluI AGCT 6 cut(s) 38, 79, 443, 608, 676, 986
Alw21I GWGCWC 3 cut(s) 81, 823, 874
Alw26I GTCTC 2 cut(s) 728, 827
Alw44I GTGCAC 2 cut(s) 819, 870
AlwI GGATC 1 cut(s) 567
AoxI GGCC 1 cut(s) 69
ApaLI GTGCAC 2 cut(s) 819, 870
ApeKI GCWGC 3 cut(s) 54, 142, 673
ApoI RAATTY 3 cut(s) 328, 1302, 1353
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 3 cut(s) 223, 714, 1376
BaeGI GKGCMC 2 cut(s) 823, 874
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 1167
Bbv12I GWGCWC 3 cut(s) 81, 823, 874
BbvI GCAGC 3 cut(s) 41, 129, 685
BccI CCATC 4 cut(s) 317, 912, 1054, 1389
BciT130I CCWGG 2 cut(s) 654, 791
BclI TGATCA 1 cut(s) 445
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 728, 827
BfaI CTAG 3 cut(s) 440, 983, 1325
BfmI CTRYAG 2 cut(s) 261, 451
BglII AGATCT 1 cut(s) 619
BisI GCNGC 3 cut(s) 55, 143, 674
BlsI GCNGC 3 cut(s) 56, 144, 675
Bme1390I CCNGG 3 cut(s) 209, 654, 791
BmeRI GACNNNNNGTC 1 cut(s) 696
BmiI GGNNCC 1 cut(s) 572
BmrFI CCNGG 3 cut(s) 209, 654, 791
BmsI GCATC 2 cut(s) 276, 1231
BpiI GAAGAC 1 cut(s) 1167
BplI GAGNNNNNCTC 2 cut(s) 1342, 1374
BpmI CTGGAG 1 cut(s) 1127
Bpu10I CCTNAGC 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 209
BsaAI YACGTR 2 cut(s) 612, 755
BsaJI CCNNGG 2 cut(s) 48, 271
BsaXI ACNNNNNCTCC 6 cut(s) 725, 755, 1100, 1130, 1362, 1392
Bsc4I CCNNNNNNNGG 1 cut(s) 1126
Bse1I ACTGG 2 cut(s) 220, 411
Bse3DI GCAATG 1 cut(s) 1056
BseBI CCWGG 2 cut(s) 654, 791
BseDI CCNNGG 2 cut(s) 48, 271
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 1126
BseMI GCAATG 1 cut(s) 1056
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 2 cut(s) 220, 411
BseSI GKGCMC 2 cut(s) 823, 874
BseXI GCAGC 3 cut(s) 41, 129, 685
BseYI CCCAGC 1 cut(s) 1333
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 3 cut(s) 81, 823, 874
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 1126
BsmAI GTCTC 2 cut(s) 728, 827
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 3 cut(s) 81, 823, 874
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 4 cut(s) 348, 445, 559, 619
Bsp19I CCATGG 1 cut(s) 271
BspACI CCGC 2 cut(s) 482, 1292
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 572
BspPI GGATC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 1056
BsrGI TGTACA 1 cut(s) 189
BsrI ACTGG 2 cut(s) 220, 411
BssECI CCNNGG 2 cut(s) 48, 271
BssMI GATC 4 cut(s) 348, 445, 559, 619
BssNAI GTATAC 1 cut(s) 423
BssT1I CCWWGG 1 cut(s) 271
Bst1107I GTATAC 1 cut(s) 423
Bst2UI CCWGG 2 cut(s) 654, 791
Bst4CI ACNGT 1 cut(s) 741
Bst6I CTCTTC 1 cut(s) 1188
BstAPI GCANNNNNTGC 1 cut(s) 800
BstAUI TGTACA 1 cut(s) 189
BstBAI YACGTR 2 cut(s) 612, 755
BstC8I GCNNGC 1 cut(s) 1047
BstDEI CTNAG 5 cut(s) 95, 171, 237, 293, 804
BstDSI CCRYGG 2 cut(s) 48, 271
BstF5I GGATG 1 cut(s) 267
BstKTI GATC 4 cut(s) 351, 448, 562, 622
BstMAI GTCTC 2 cut(s) 728, 827
BstMBI GATC 4 cut(s) 348, 445, 559, 619
BstMWI GCNNNNNNNGC 2 cut(s) 800, 1051
BstNI CCWGG 2 cut(s) 654, 791
BstNSI RCATGY 1 cut(s) 361
BstSCI CCNGG 3 cut(s) 207, 652, 789
BstSFI CTRYAG 2 cut(s) 261, 451
BstSLI GKGCMC 2 cut(s) 823, 874
BstSNI TACGTA 1 cut(s) 755
BstV1I GCAGC 3 cut(s) 41, 129, 685
BstV2I GAAGAC 1 cut(s) 1167
BstX2I RGATCY 2 cut(s) 559, 619
BstYI RGATCY 2 cut(s) 559, 619
BstZ17I GTATAC 1 cut(s) 423
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 2 cut(s) 48, 271
BtsCI GGATG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 418
Cac8I GCNNGC 1 cut(s) 1047
Csp6I GTAC 4 cut(s) 190, 756, 1066, 1190
CviAII CATG 5 cut(s) 32, 193, 272, 358, 795
CviQI GTAC 4 cut(s) 190, 756, 1066, 1190
DdeI CTNAG 5 cut(s) 95, 171, 237, 293, 804
DpnI GATC 4 cut(s) 350, 447, 561, 621
DpnII GATC 4 cut(s) 348, 445, 559, 619
DraI TTTAAA 2 cut(s) 9, 546
DriI GACNNNNNGTC 1 cut(s) 696
Eam1104I CTCTTC 1 cut(s) 1188
Eam1105I GACNNNNNGTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 1188
Ecl136II GAGCTC 1 cut(s) 79
Eco105I TACGTA 1 cut(s) 755
Eco130I CCWWGG 1 cut(s) 271
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 81
Eco32I GATATC 2 cut(s) 907, 1330
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 1353
EcoRII CCWGG 2 cut(s) 652, 789
EcoRV GATATC 2 cut(s) 907, 1330
EcoT14I CCWWGG 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 5 cut(s) 35, 196, 275, 361, 798
FalI AAGNNNNNCTT 4 cut(s) 56, 88, 1254, 1286
FatI CATG 5 cut(s) 31, 192, 271, 357, 794
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 1 cut(s) 422
Fnu4HI GCNGC 3 cut(s) 55, 143, 674
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 3 cut(s) 55, 143, 674
FspBI CTAG 3 cut(s) 440, 983, 1325
GluI GCNGC 3 cut(s) 55, 143, 674
GsaI CCCAGC 1 cut(s) 1337
GsuI CTGGAG 1 cut(s) 1127
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 209
Hin1II CATG 5 cut(s) 35, 196, 275, 361, 798
HincII GTYRAC 3 cut(s) 205, 847, 1230
HindII GTYRAC 3 cut(s) 205, 847, 1230
HinfI GANTC 8 cut(s) 16, 377, 631, 649, 775, 1093, 1210, 1377
HpaII CCGG 1 cut(s) 209
HphI GGTGA 3 cut(s) 223, 714, 1376
Hpy188I TCNGA 6 cut(s) 21, 63, 294, 717, 904, 1376
Hpy188III TCNNGA 4 cut(s) 352, 1106, 1198, 1258
HpyAV CCTTC 2 cut(s) 58, 1130
HpyCH4III ACNGT 1 cut(s) 741
HpyCH4IV ACGT 3 cut(s) 611, 754, 1392
HpyCH4V TGCA 7 cut(s) 460, 510, 821, 872, 951, 1049, 1244
HpyF10VI GCNNNNNNNGC 2 cut(s) 800, 1051
HpyF3I CTNAG 5 cut(s) 95, 171, 237, 293, 804
HpySE526I ACGT 3 cut(s) 611, 754, 1392
Hsp92II CATG 5 cut(s) 35, 196, 275, 361, 798
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 4 cut(s) 348, 445, 559, 619
LmnI GCTCC 4 cut(s) 84, 526, 576, 1220
Lsp1109I GCAGC 3 cut(s) 41, 129, 685
LweI GCATC 2 cut(s) 276, 1231
MaeI CTAG 3 cut(s) 440, 983, 1325
MaeII ACGT 3 cut(s) 611, 754, 1392
MaeIII GTNAC 3 cut(s) 232, 785, 1090
MalI GATC 4 cut(s) 350, 447, 561, 621
MboI GATC 4 cut(s) 348, 445, 559, 619
MboII GAAGA 2 cut(s) 1167, 1175
MfeI CAATTG 1 cut(s) 491
MflI RGATCY 2 cut(s) 559, 619
MhlI GDGCHC 3 cut(s) 81, 823, 874
MlyI GAGTC 4 cut(s) 643, 784, 1087, 1371
MmeI TCCRAC 2 cut(s) 456, 1399
MnlI CCTC 6 cut(s) 61, 288, 549, 1160, 1260, 1368
MseI TTAA 5 cut(s) 8, 513, 521, 545, 645
MslI CAYNNNNRTG 2 cut(s) 515, 1088
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 3 cut(s) 209, 654, 791
MunI CAATTG 1 cut(s) 491
MvaI CCWGG 2 cut(s) 654, 791
MwoI GCNNNNNNNGC 2 cut(s) 800, 1051
NciI CCSGG 1 cut(s) 209
NcoI CCATGG 1 cut(s) 271
NdeII GATC 4 cut(s) 348, 445, 559, 619
NlaIII CATG 5 cut(s) 35, 196, 275, 361, 798
NlaIV GGNNCC 1 cut(s) 572
NmuCI GTSAC 1 cut(s) 1090
NspI RCATGY 1 cut(s) 361
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 4 cut(s) 16, 377, 631, 1210
PflFI GACNNNGTC 1 cut(s) 851
PkrI GCNGC 3 cut(s) 56, 144, 675
PleI GAGTC 4 cut(s) 643, 783, 1087, 1371
PpsI GAGTC 4 cut(s) 643, 783, 1087, 1371
Ppu21I YACGTR 2 cut(s) 612, 755
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 652, 789
PspFI CCCAGC 1 cut(s) 1333
PspGI CCWGG 2 cut(s) 652, 789
PspN4I GGNNCC 1 cut(s) 572
PsuI RGATCY 2 cut(s) 559, 619
PsyI GACNNNGTC 1 cut(s) 851
RsaI GTAC 4 cut(s) 191, 757, 1067, 1191
RsaNI GTAC 4 cut(s) 190, 756, 1066, 1190
RseI CAYNNNNRTG 2 cut(s) 515, 1088
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 5 cut(s) 8, 513, 521, 545, 645
SatI GCNGC 3 cut(s) 55, 143, 674
Sau3AI GATC 4 cut(s) 348, 445, 559, 619
SchI GAGTC 4 cut(s) 643, 784, 1087, 1371
ScrFI CCNGG 3 cut(s) 209, 654, 791
SduI GDGCHC 3 cut(s) 81, 823, 874
SfaNI GCATC 2 cut(s) 276, 1231
SfcI CTRYAG 2 cut(s) 261, 451
SmiMI CAYNNNNRTG 2 cut(s) 515, 1088
SnaBI TACGTA 1 cut(s) 755
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 2 cut(s) 482, 1292
SspI AATATT 2 cut(s) 947, 1039
SspMI CTAG 3 cut(s) 440, 983, 1325
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 3 cut(s) 207, 652, 789
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 1 cut(s) 741
TaiI ACGT 3 cut(s) 614, 757, 1395
TaqI TCGA 1 cut(s) 839
TatI WGTACW 3 cut(s) 189, 1065, 1189
TfiI GAWTC 4 cut(s) 16, 377, 631, 1210
Tru1I TTAA 5 cut(s) 8, 513, 521, 545, 645
Tru9I TTAA 5 cut(s) 8, 513, 521, 545, 645
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 1090
TseI GCWGC 3 cut(s) 54, 142, 673
Tsp45I GTSAC 1 cut(s) 1090
TspDTI ATGAA 8 cut(s) 48, 198, 209, 578, 903, 1029, 1049, 1167
TspGWI ACGGA 1 cut(s) 845
TspRI CASTG 1 cut(s) 418
Tth111I GACNNNGTC 1 cut(s) 851
VneI GTGCAC 2 cut(s) 819, 870
XapI RAATTY 3 cut(s) 328, 1302, 1353
XceI RCATGY 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 422
XspI CTAG 3 cut(s) 440, 983, 1325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.