Rw2G026530

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004459
Physical Location & Seq
Forward (+)
40969297 .. 40971635
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G026530.1

Sequence Viewer

Length: 1548 bp
ATGGCTTTGAACCTGATTCGGATTGCTTCCTATGAAGCTGAAAACCCCGTGGGCTACTCTCTGAAGGAGGCCTTTGAGCTCCTTGAACCAAAACTAAGACCCCCATTGGCAATAACAATCCCAACCCCACAGGAATACTTGCTGCTCAACAAGGCTATTTTGTATGGAGTTCTATGCGAAACCCATTTTGCCAAAACACATATTAAGCATTTACATGCCATTGTCATTGATGGGTATGGCTTGTTTGCTAGTTTGATTGCTAAGGTTGTGAATGAATTGTACACGAAACTTGTTGACCCAGTGAAGTGCCAGTTGATTTGGGTTACTAAGGAGATGATTGATGTTCAGGCTGTAGGCATCCATGGTTTGTTGGTTTGTTTTCTGAGGCAAATTATCGTGAGCATTTTTTTGACCAAATGGGATTCTCTCTTGGAAGTAGAACCAATGATTTTGACTAGTGGATTGTATACATATCTTCGGCTAGTAGCTGATCACTATAGATTGCTAAGTAATGCAAAGTTGGAAGCGTTAAAGCAATTGGAAATTGATTTCTGCATTAAAGTGTTAAGGGAGCAGTTTTCTGTCTGTTTAAAGGTTGGGAGGGATCTTGTTCGGCTTCTACAAGATGTGGTTCATATACCAAACTTTAGAGCTACGTGGAAAGATTTGGTATTGAATCAAGGCAAGTTTAAGACTCCTGGTTTTTGTGTTATTTCGCAGCTCTATAACACAAGGACTTCAAGTGAATATATTTTACTTGGGATTTCACCAGAAATGGAGACACAGTTGCGGTTTTTACTTACTTGCGTGAAGTTAGGGATTTCTATGTGCACCAACAGACAGACTTTGATAGTTGACATTGTCCGTTTTATATGTTGTGCACACCACCCACCAAATGAAATCATACAATCAGATATCATTCCAAGATGGGCTGTTGTAGGTTGGCTATTGAAATATTGCACAAAGAATTATGTCCAAGCCAATGTGAAACTAGCTCTACTTTATGATTGGCTATTCTTTGATGAAAGAGTAGATAATATAATGAATATTGAGCCTGCAATGCTACTAATAGTGTACTCTATACCCAGATACATTGATGTGACTCACACACTTCTTGAGTTTTTGTTCCTTCTTGTGGACAGTTATGATGTGGAACATAAAGATATAATTATTAGAGGCGTGTCTTCATCTCTTCGTGTACTTGTCAAGAAAGGAGTGATTCGCTCCTTTGATGTGCTGACATCTTGTGATGCACTTTCTCCTGTCTTGAAAGAGAGGCTTGATAGGTTTTTGTCAGGTGCGGAATTGGAAATTTATAAAAGGCTGGAACAAACTAGATTTCCCAATCCCTTTGCTTTGGAGAATTCCTCTTGTATGGGAACTCCGACCCCATCACCAGAACGTGAACGAGATAGATTTGCTATAAGATCAGCTGATACTTCTGTTATGATATCAGATTTGCAACAGGCTCATTTTCTGGGTCACTCCGTGGGAACTCCTACACCATCACCAGAACAGCAGTCTAAATGTAGCCAAGGCTCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

515

Amino Acids

58.74

Weight (kDa)

7.17

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 45 - 427 2.2e-121 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1317
AccI GTMKAC 1 cut(s) 467
AciI CCGC 2 cut(s) 790, 1301
AclWI GGATC 1 cut(s) 612
AcsI RAATTY 2 cut(s) 1311, 1363
AcuI CTGAAG 1 cut(s) 83
AdeI CACNNNGTG 1 cut(s) 1489
AfaI GTAC 3 cut(s) 281, 1076, 1200
AfiI CCNNNNNNNGG 1 cut(s) 1135
AgsI TTSAA 6 cut(s) 10, 86, 676, 741, 952, 1270
AhlI ACTAGT 1 cut(s) 455
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 7 cut(s) 38, 79, 488, 653, 721, 995, 1433
AluI AGCT 7 cut(s) 38, 79, 488, 653, 721, 995, 1433
Alw21I GWGCWC 3 cut(s) 81, 833, 883
Alw26I GTCTC 1 cut(s) 773
Alw44I GTGCAC 2 cut(s) 829, 879
AlwI GGATC 1 cut(s) 612
AoxI GGCC 1 cut(s) 69
ApaLI GTGCAC 2 cut(s) 829, 879
ApeKI GCWGC 2 cut(s) 142, 718
ApoI RAATTY 2 cut(s) 1311, 1363
AsuHPI GGTGA 3 cut(s) 759, 1386, 1500
BaeGI GKGCMC 2 cut(s) 833, 883
BaeI ACNNNNGTAYC 2 cut(s) 1428, 1461
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 1176
Bbv12I GWGCWC 3 cut(s) 81, 833, 883
BbvI GCAGC 2 cut(s) 129, 730
BccI CCATC 4 cut(s) 224, 921, 1399, 1513
BciT130I CCWGG 1 cut(s) 699
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 1 cut(s) 773
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 5 cut(s) 249, 456, 482, 992, 1335
BfmI CTRYAG 2 cut(s) 351, 496
BisI GCNGC 2 cut(s) 143, 719
BlsI GCNGC 2 cut(s) 144, 720
Bme1390I CCNGG 1 cut(s) 699
BmrFI CCNGG 1 cut(s) 699
BmrI ACTGGG 1 cut(s) 293
BmsI GCATC 2 cut(s) 366, 1240
BmuI ACTGGG 1 cut(s) 293
BpiI GAAGAC 1 cut(s) 1176
BplI GAGNNNNNCTC 2 cut(s) 1352, 1384
Bpu10I CCTNAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 1136
BsaAI YACGTR 1 cut(s) 657
BsaJI CCNNGG 4 cut(s) 48, 361, 1488, 1534
BsaXI ACNNNNNCTCC 2 cut(s) 770, 800
Bsc4I CCNNNNNNNGG 1 cut(s) 1135
Bse1I ACTGG 2 cut(s) 299, 310
Bse3DI GCAATG 1 cut(s) 1065
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 4 cut(s) 48, 361, 1488, 1534
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 1135
BseMI GCAATG 1 cut(s) 1065
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 2 cut(s) 299, 310
BseSI GKGCMC 2 cut(s) 833, 883
BseXI GCAGC 2 cut(s) 129, 730
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 3 cut(s) 81, 833, 883
BslI CCNNNNNNNGG 1 cut(s) 1135
BsmAI GTCTC 1 cut(s) 773
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 3 cut(s) 81, 833, 883
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 3 cut(s) 490, 604, 1427
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 2 cut(s) 790, 1301
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 375
BspPI GGATC 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 1065
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 2 cut(s) 299, 310
BssECI CCNNGG 4 cut(s) 48, 361, 1488, 1534
BssMI GATC 3 cut(s) 490, 604, 1427
BssNAI GTATAC 1 cut(s) 468
BssT1I CCWWGG 2 cut(s) 361, 1534
Bst1107I GTATAC 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 2 cut(s) 786, 1142
Bst6I CTCTTC 1 cut(s) 1197
BstAUI TGTACA 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 657
BstC8I GCNNGC 1 cut(s) 1056
BstDEI CTNAG 5 cut(s) 95, 261, 327, 383, 506
BstDSI CCRYGG 3 cut(s) 48, 361, 1488
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 3 cut(s) 493, 607, 1430
BstMAI GTCTC 1 cut(s) 773
BstMBI GATC 3 cut(s) 490, 604, 1427
BstMWI GCNNNNNNNGC 1 cut(s) 1060
BstNI CCWGG 1 cut(s) 699
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 697
BstSFI CTRYAG 2 cut(s) 351, 496
BstSLI GKGCMC 2 cut(s) 833, 883
BstV1I GCAGC 2 cut(s) 129, 730
BstV2I GAAGAC 1 cut(s) 1176
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BstZ17I GTATAC 1 cut(s) 468
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 3 cut(s) 48, 361, 1488
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 1056
Csp6I GTAC 3 cut(s) 280, 1075, 1199
CviAII CATG 2 cut(s) 215, 362
CviQI GTAC 3 cut(s) 280, 1075, 1199
DdeI CTNAG 5 cut(s) 95, 261, 327, 383, 506
DpnI GATC 3 cut(s) 492, 606, 1429
DpnII GATC 3 cut(s) 490, 604, 1427
DraI TTTAAA 1 cut(s) 591
DraIII CACNNNGTG 1 cut(s) 1489
Eam1104I CTCTTC 1 cut(s) 1197
EarI CTCTTC 1 cut(s) 1197
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 2 cut(s) 361, 1534
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 81
Eco32I GATATC 2 cut(s) 916, 1452
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 1363
EcoRII CCWGG 1 cut(s) 697
EcoRV GATATC 2 cut(s) 916, 1452
EcoT14I CCWWGG 2 cut(s) 361, 1534
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 2 cut(s) 361, 1534
FaeI CATG 2 cut(s) 218, 365
FalI AAGNNNNNCTT 4 cut(s) 56, 88, 1263, 1295
FatI CATG 2 cut(s) 214, 361
FbaI TGATCA 1 cut(s) 490
FblI GTMKAC 1 cut(s) 467
Fnu4HI GCNGC 2 cut(s) 143, 719
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 143, 719
FspBI CTAG 5 cut(s) 249, 456, 482, 992, 1335
GluI GCNGC 2 cut(s) 143, 719
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 2 cut(s) 218, 365
HincII GTYRAC 2 cut(s) 295, 856
HindII GTYRAC 2 cut(s) 295, 856
HinfI GANTC 6 cut(s) 16, 422, 676, 694, 1102, 1219
HphI GGTGA 3 cut(s) 759, 1386, 1500
Hpy188I TCNGA 6 cut(s) 21, 63, 384, 913, 1386, 1456
Hpy188III TCNNGA 4 cut(s) 397, 1115, 1207, 1267
HpyAV CCTTC 2 cut(s) 58, 1139
HpyCH4III ACNGT 2 cut(s) 786, 1142
HpyCH4IV ACGT 2 cut(s) 656, 1402
HpyCH4V TGCA 8 cut(s) 515, 555, 831, 881, 960, 1058, 1253, 1462
HpyF10VI GCNNNNNNNGC 1 cut(s) 1060
HpyF3I CTNAG 5 cut(s) 95, 261, 327, 383, 506
HpySE526I ACGT 2 cut(s) 656, 1402
Hsp92II CATG 2 cut(s) 218, 365
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 3 cut(s) 490, 604, 1427
LmnI GCTCC 3 cut(s) 84, 571, 1229
Lsp1109I GCAGC 2 cut(s) 129, 730
LweI GCATC 2 cut(s) 366, 1240
MaeI CTAG 5 cut(s) 249, 456, 482, 992, 1335
MaeII ACGT 2 cut(s) 656, 1402
MaeIII GTNAC 3 cut(s) 322, 1099, 1481
MalI GATC 3 cut(s) 492, 606, 1429
MboI GATC 3 cut(s) 490, 604, 1427
MboII GAAGA 3 cut(s) 467, 1176, 1184
MfeI CAATTG 1 cut(s) 536
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 3 cut(s) 81, 833, 883
MluCI AATT 9 cut(s) 275, 390, 536, 543, 967, 1167, 1304, 1311, 1363
MlyI GAGTC 2 cut(s) 688, 1096
MmeI TCCRAC 2 cut(s) 501, 1409
MnlI CCTC 6 cut(s) 61, 378, 594, 1169, 1269, 1378
MseI TTAA 6 cut(s) 204, 530, 558, 566, 590, 690
MslI CAYNNNNRTG 3 cut(s) 213, 560, 1097
MspA1I CMGCKG 1 cut(s) 1433
MspR9I CCNGG 1 cut(s) 699
MunI CAATTG 1 cut(s) 536
MvaI CCWGG 1 cut(s) 699
MwoI GCNNNNNNNGC 1 cut(s) 1060
NcoI CCATGG 1 cut(s) 361
NdeII GATC 3 cut(s) 490, 604, 1427
NlaIII CATG 2 cut(s) 218, 365
NmuCI GTSAC 2 cut(s) 1099, 1481
NspI RCATGY 1 cut(s) 218
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 4 cut(s) 16, 422, 676, 1219
PflFI GACNNNGTC 1 cut(s) 860
PkrI GCNGC 2 cut(s) 144, 720
PleI GAGTC 2 cut(s) 688, 1096
PpsI GAGTC 2 cut(s) 688, 1096
Ppu21I YACGTR 1 cut(s) 657
PsiI TTATAA 1 cut(s) 1317
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 697
PspGI CCWGG 1 cut(s) 697
PsuI RGATCY 1 cut(s) 604
PsyI GACNNNGTC 1 cut(s) 860
PvuII CAGCTG 1 cut(s) 1433
RsaI GTAC 3 cut(s) 281, 1076, 1200
RsaNI GTAC 3 cut(s) 280, 1075, 1199
RseI CAYNNNNRTG 3 cut(s) 213, 560, 1097
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 6 cut(s) 204, 530, 558, 566, 590, 690
SatI GCNGC 2 cut(s) 143, 719
Sau3AI GATC 3 cut(s) 490, 604, 1427
SchI GAGTC 2 cut(s) 688, 1096
ScrFI CCNGG 1 cut(s) 699
SduI GDGCHC 3 cut(s) 81, 833, 883
SfaNI GCATC 2 cut(s) 366, 1240
SfcI CTRYAG 2 cut(s) 351, 496
SmiMI CAYNNNNRTG 3 cut(s) 213, 560, 1097
SmlI CTYRAG 1 cut(s) 1115
SmoI CTYRAG 1 cut(s) 1115
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 9 cut(s) 275, 390, 536, 543, 967, 1167, 1304, 1311, 1363
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 2 cut(s) 790, 1301
SspI AATATT 2 cut(s) 956, 1048
SspMI CTAG 5 cut(s) 249, 456, 482, 992, 1335
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 697
StyI CCWWGG 2 cut(s) 361, 1534
TaaI ACNGT 2 cut(s) 786, 1142
TaiI ACGT 2 cut(s) 659, 1405
TasI AATT 9 cut(s) 275, 390, 536, 543, 967, 1167, 1304, 1311, 1363
TatI WGTACW 3 cut(s) 279, 1074, 1198
TfiI GAWTC 4 cut(s) 16, 422, 676, 1219
Tru1I TTAA 6 cut(s) 204, 530, 558, 566, 590, 690
Tru9I TTAA 6 cut(s) 204, 530, 558, 566, 590, 690
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 2 cut(s) 1099, 1481
TseI GCWGC 2 cut(s) 142, 718
Tsp45I GTSAC 2 cut(s) 1099, 1481
TspDTI ATGAA 7 cut(s) 48, 288, 623, 912, 1038, 1058, 1176
TspGWI ACGGA 2 cut(s) 854, 1477
TspRI CASTG 1 cut(s) 306
Tth111I GACNNNGTC 1 cut(s) 860
VneI GTGCAC 2 cut(s) 829, 879
XapI RAATTY 2 cut(s) 1311, 1363
XceI RCATGY 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 467
XspI CTAG 5 cut(s) 249, 456, 482, 992, 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.