Rh2BG336100

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004459
Physical Location & Seq
Forward (+)
44430033 .. 44431523
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG336100.1

Sequence Viewer

Length: 1491 bp
ATGGCTTTGAACCTGATTCGGATTGCTTCCTATGAAGTTGAAAACCCCGTGGGCTGCTCTCTGAAGGAGGCCTTTGAGCTCCTTGAACCAAAACTAAGACCCCCATTGGCAATAACAATCCCAACCCCACAGGAATACTTGTTGCTCAACAAGGCTATTTTGTATGGAGTTCTATGCGAAACCCATTTTGCCAAAACACATATTAAGCATTTACATGCCATTGTCACTGATGGGTATGGCTTGTTTGCTAGTTTGATTGCTAAGGTTGTGAATGAATTGTACACGAAACTTGTTGACCCAGTGAAGTGCCAGTTGATTTGGGTTACTAAGGAGATGATTGATGTTCAGGCTGTAGGCATCCATGGTTTGTTGGTTTGTTTTCTGAGGCAAATTGTTGGTGGGGATTTTAGTGATGGAAATTTGTGGTTGTGTTTTGAGATCGTGAGCATTTTTTTGACCAAATGGGATTCTCTCTTGGAAGTAGAACCAATGATTTTGACCAGTGGATTGTATACATATCTTCGGCTAGTAGCTGATCACTATAGATTGCTAAGTAATGCAAAGTTGGAAGCGTTAAAGCAATTGGAAATTGATTTCTACATTAAAGTGTTAAGGGAGCAGTTTTCTGTCTGTTTAAAGATTGGGAGGGATCTTGTTCGGCTTCTACAAGACGTGGTTCATATACCAAACTTTAGAGCTACGTGGAAAGATTTGGTATTGAATCAAGGCAAGTTTAAGACTCCTGGTTTTTCTGTTATTTCGCAGCTCTATAACACAAGGACTTCAAGTGAATATATTTTACTTGGGATTTCACCAGAAATGGAGACACAGTTGCGGTTTTTACTTAATTGCGTGAAGTTAGGGAGTCAAAAGCGTTACCAGGCATGGTTTGCTAAGAAGTTTCTATGTGCACCAAACAGAGAGACTTTGATAGTTGACATTGTCCGTTTTATATGTTGTGCGCACCACCCACCAAATGAAATCATACAATCAGATATCATTCCAAGATGGGCTGTTGTAGGTTGGCTATTGAAATATTGCACAAAGAATTATGTCCAAGCCAATGTGAAACTAGCTCTACTTTATGATTGGCTATTCTTTGATGAAAGAGTAGATACTATAATGAATATTGAGCCTGCAATGCTACTGATAGTGTACTCTATACCCAGATACATTGATGTGACTCACACACTTCTTGAGTTTTTGTTCCTTCTTGTGGACAGTTATGATGTGGAACATAAAGATATAATTATTAGAGGCGTGTCTTCATCTCTTCGTGTACTTGTCAAGAAAGGAGTGATTCGCTCTTTTGATGTGTTAACATCTTGTGATGCACTTTCTCCTGTCTTGAAAGAGAGGCTTGATCGGTTTTTGTCAGGTGCGGAATTGGAAATTTATAAAAGGCTGGAACAAACTAGATTTCCCAGTCCCTTTGCTTTGGAGAATTCCTCTTGTATAGGAACTCCAACCCCATCACCAGAACGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

496

Amino Acids

56.86

Weight (kDa)

7.13

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 45 - 454 3.4e-150 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1398
Acc16I TGCGCA 1 cut(s) 963
AccI GTMKAC 1 cut(s) 512
AciI CCGC 2 cut(s) 835, 1382
AclWI GGATC 1 cut(s) 657
AcsI RAATTY 3 cut(s) 418, 1392, 1444
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 3 cut(s) 281, 1157, 1281
AfiI CCNNNNNNNGG 1 cut(s) 1216
AgsI TTSAA 7 cut(s) 10, 41, 86, 721, 786, 1033, 1351
AjiI CACGTC 1 cut(s) 673
AjnI CCWGG 2 cut(s) 742, 879
AluBI AGCT 5 cut(s) 79, 533, 698, 766, 1076
AluI AGCT 5 cut(s) 79, 533, 698, 766, 1076
Alw21I GWGCWC 2 cut(s) 81, 913
Alw26I GTCTC 2 cut(s) 818, 917
Alw44I GTGCAC 1 cut(s) 909
AlwI GGATC 1 cut(s) 657
AoxI GGCC 1 cut(s) 69
ApaLI GTGCAC 1 cut(s) 909
ApeKI GCWGC 2 cut(s) 54, 763
ApoI RAATTY 3 cut(s) 418, 1392, 1444
AspLEI GCGC 1 cut(s) 964
AsuHPI GGTGA 2 cut(s) 804, 1467
BaeGI GKGCMC 1 cut(s) 913
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 1257
Bbv12I GWGCWC 2 cut(s) 81, 913
BbvI GCAGC 2 cut(s) 41, 775
BccI CCATC 4 cut(s) 224, 407, 1002, 1480
BciT130I CCWGG 2 cut(s) 744, 881
BclI TGATCA 1 cut(s) 535
BcoDI GTCTC 2 cut(s) 818, 917
BfaI CTAG 4 cut(s) 249, 527, 1073, 1416
BfmI CTRYAG 2 cut(s) 351, 541
BisI GCNGC 2 cut(s) 55, 764
BlsI GCNGC 2 cut(s) 56, 765
Bme1390I CCNGG 2 cut(s) 744, 881
BmgBI CACGTC 1 cut(s) 673
BmrFI CCNGG 2 cut(s) 744, 881
BmrI ACTGGG 2 cut(s) 293, 1419
BmsI GCATC 2 cut(s) 366, 1321
BmuI ACTGGG 2 cut(s) 293, 1419
BpiI GAAGAC 1 cut(s) 1257
BplI GAGNNNNNCTC 2 cut(s) 1433, 1465
Bpu10I CCTNAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 1217
BsaAI YACGTR 1 cut(s) 702
BsaJI CCNNGG 2 cut(s) 48, 361
BsaXI ACNNNNNCTCC 2 cut(s) 815, 845
Bsc4I CCNNNNNNNGG 1 cut(s) 1216
Bse1I ACTGG 4 cut(s) 299, 310, 501, 1425
Bse3DI GCAATG 1 cut(s) 1146
BseBI CCWGG 2 cut(s) 744, 881
BseDI CCNNGG 2 cut(s) 48, 361
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 1216
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 4 cut(s) 299, 310, 501, 1425
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 2 cut(s) 41, 775
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 2 cut(s) 81, 913
BslFI GGGAC 1 cut(s) 1413
BslI CCNNNNNNNGG 1 cut(s) 1216
BsmAI GTCTC 2 cut(s) 818, 917
BsmFI GGGAC 1 cut(s) 1413
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 81, 913
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 4 cut(s) 438, 535, 649, 1363
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 2 cut(s) 835, 1382
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 375
BspPI GGATC 1 cut(s) 657
BsrDI GCAATG 1 cut(s) 1146
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 4 cut(s) 299, 310, 501, 1425
BssECI CCNNGG 2 cut(s) 48, 361
BssMI GATC 4 cut(s) 438, 535, 649, 1363
BssNAI GTATAC 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 361
Bst1107I GTATAC 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 744, 881
Bst4CI ACNGT 2 cut(s) 831, 1223
Bst6I CTCTTC 1 cut(s) 1278
BstAPI GCANNNNNTGC 1 cut(s) 890
BstAUI TGTACA 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 702
BstC8I GCNNGC 1 cut(s) 1137
BstDEI CTNAG 6 cut(s) 95, 261, 327, 383, 551, 894
BstDSI CCRYGG 2 cut(s) 48, 361
BstF5I GGATG 1 cut(s) 357
BstHHI GCGC 1 cut(s) 964
BstKTI GATC 4 cut(s) 441, 538, 652, 1366
BstMAI GTCTC 2 cut(s) 818, 917
BstMBI GATC 4 cut(s) 438, 535, 649, 1363
BstMWI GCNNNNNNNGC 2 cut(s) 890, 1141
BstNI CCWGG 2 cut(s) 744, 881
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 742, 879
BstSFI CTRYAG 2 cut(s) 351, 541
BstSLI GKGCMC 1 cut(s) 913
BstV1I GCAGC 2 cut(s) 41, 775
BstV2I GAAGAC 1 cut(s) 1257
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BstZ17I GTATAC 1 cut(s) 513
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 2 cut(s) 48, 361
BtrI CACGTC 1 cut(s) 673
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 3 cut(s) 225, 306, 508
Cac8I GCNNGC 1 cut(s) 1137
CfoI GCGC 1 cut(s) 964
Csp6I GTAC 3 cut(s) 280, 1156, 1280
CviAII CATG 3 cut(s) 215, 362, 885
CviQI GTAC 3 cut(s) 280, 1156, 1280
DdeI CTNAG 6 cut(s) 95, 261, 327, 383, 551, 894
DpnI GATC 4 cut(s) 440, 537, 651, 1365
DpnII GATC 4 cut(s) 438, 535, 649, 1363
DraI TTTAAA 1 cut(s) 636
Eam1104I CTCTTC 1 cut(s) 1278
EarI CTCTTC 1 cut(s) 1278
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 997
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 1444
EcoRII CCWGG 2 cut(s) 742, 879
EcoRV GATATC 1 cut(s) 997
EcoT14I CCWWGG 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 3 cut(s) 218, 365, 888
FalI AAGNNNNNCTT 4 cut(s) 56, 88, 1344, 1376
FaqI GGGAC 1 cut(s) 1413
FatI CATG 3 cut(s) 214, 361, 884
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 2 cut(s) 55, 764
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 55, 764
FspAI RTGCGCAY 1 cut(s) 963
FspBI CTAG 4 cut(s) 249, 527, 1073, 1416
FspI TGCGCA 1 cut(s) 963
GlaI GCGC 1 cut(s) 963
GluI GCNGC 2 cut(s) 55, 764
HaeIII GGCC 1 cut(s) 71
HhaI GCGC 1 cut(s) 964
Hin1II CATG 3 cut(s) 218, 365, 888
Hin6I GCGC 1 cut(s) 962
HinP1I GCGC 1 cut(s) 962
HincII GTYRAC 3 cut(s) 295, 937, 1320
HindII GTYRAC 3 cut(s) 295, 937, 1320
HinfI GANTC 7 cut(s) 16, 467, 721, 739, 865, 1183, 1300
HpaI GTTAAC 1 cut(s) 1320
HphI GGTGA 2 cut(s) 804, 1467
Hpy166II GTNNAC 9 cut(s) 282, 295, 513, 911, 937, 1156, 1219, 1280, 1320
Hpy188I TCNGA 4 cut(s) 21, 63, 384, 994
Hpy188III TCNNGA 4 cut(s) 442, 1196, 1288, 1348
Hpy8I GTNNAC 9 cut(s) 282, 295, 513, 911, 937, 1156, 1219, 1280, 1320
HpyAV CCTTC 2 cut(s) 58, 1220
HpyCH4III ACNGT 2 cut(s) 831, 1223
HpyCH4IV ACGT 3 cut(s) 672, 701, 1483
HpyCH4V TGCA 5 cut(s) 560, 911, 1041, 1139, 1334
HpyF10VI GCNNNNNNNGC 2 cut(s) 890, 1141
HpyF3I CTNAG 6 cut(s) 95, 261, 327, 383, 551, 894
HpySE526I ACGT 3 cut(s) 672, 701, 1483
Hsp92II CATG 3 cut(s) 218, 365, 888
HspAI GCGC 1 cut(s) 962
Ksp22I TGATCA 1 cut(s) 535
KspAI GTTAAC 1 cut(s) 1320
Kzo9I GATC 4 cut(s) 438, 535, 649, 1363
LmnI GCTCC 2 cut(s) 84, 616
Lsp1109I GCAGC 2 cut(s) 41, 775
LweI GCATC 2 cut(s) 366, 1321
MaeI CTAG 4 cut(s) 249, 527, 1073, 1416
MaeII ACGT 3 cut(s) 672, 701, 1483
MaeIII GTNAC 4 cut(s) 223, 322, 875, 1180
MalI GATC 4 cut(s) 440, 537, 651, 1365
MboI GATC 4 cut(s) 438, 535, 649, 1363
MboII GAAGA 3 cut(s) 512, 1257, 1265
MfeI CAATTG 1 cut(s) 581
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 2 cut(s) 81, 913
MlyI GAGTC 3 cut(s) 733, 874, 1177
MmeI TCCRAC 2 cut(s) 546, 1490
MnlI CCTC 6 cut(s) 61, 378, 639, 1250, 1350, 1459
MseI TTAA 8 cut(s) 204, 575, 603, 611, 635, 735, 846, 1319
MslI CAYNNNNRTG 3 cut(s) 213, 605, 1178
MspR9I CCNGG 2 cut(s) 744, 881
MunI CAATTG 1 cut(s) 581
MvaI CCWGG 2 cut(s) 744, 881
MwoI GCNNNNNNNGC 2 cut(s) 890, 1141
NcoI CCATGG 1 cut(s) 361
NdeII GATC 4 cut(s) 438, 535, 649, 1363
NlaIII CATG 3 cut(s) 218, 365, 888
NmuCI GTSAC 2 cut(s) 223, 1180
NsbI TGCGCA 1 cut(s) 963
NspI RCATGY 1 cut(s) 218
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 4 cut(s) 16, 467, 721, 1300
PflFI GACNNNGTC 1 cut(s) 941
PkrI GCNGC 2 cut(s) 56, 765
PleI GAGTC 3 cut(s) 733, 873, 1177
PpsI GAGTC 3 cut(s) 733, 873, 1177
Ppu21I YACGTR 1 cut(s) 702
PsiI TTATAA 1 cut(s) 1398
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 742, 879
PspGI CCWGG 2 cut(s) 742, 879
PsuI RGATCY 1 cut(s) 649
PsyI GACNNNGTC 1 cut(s) 941
RsaI GTAC 3 cut(s) 281, 1157, 1281
RsaNI GTAC 3 cut(s) 280, 1156, 1280
RseI CAYNNNNRTG 3 cut(s) 213, 605, 1178
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 8 cut(s) 204, 575, 603, 611, 635, 735, 846, 1319
SatI GCNGC 2 cut(s) 55, 764
Sau3AI GATC 4 cut(s) 438, 535, 649, 1363
SchI GAGTC 3 cut(s) 733, 874, 1177
ScrFI CCNGG 2 cut(s) 744, 881
SduI GDGCHC 2 cut(s) 81, 913
SfaNI GCATC 2 cut(s) 366, 1321
SfcI CTRYAG 2 cut(s) 351, 541
SmiMI CAYNNNNRTG 3 cut(s) 213, 605, 1178
SmlI CTYRAG 1 cut(s) 1196
SmoI CTYRAG 1 cut(s) 1196
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 2 cut(s) 835, 1382
SspI AATATT 2 cut(s) 1037, 1129
SspMI CTAG 4 cut(s) 249, 527, 1073, 1416
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 742, 879
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 2 cut(s) 831, 1223
TaiI ACGT 3 cut(s) 675, 704, 1486
TatI WGTACW 3 cut(s) 279, 1155, 1279
TfiI GAWTC 4 cut(s) 16, 467, 721, 1300
Tru1I TTAA 8 cut(s) 204, 575, 603, 611, 635, 735, 846, 1319
Tru9I TTAA 8 cut(s) 204, 575, 603, 611, 635, 735, 846, 1319
TscAI CASTG 3 cut(s) 232, 306, 508
TseFI GTSAC 2 cut(s) 223, 1180
TseI GCWGC 2 cut(s) 54, 763
Tsp45I GTSAC 2 cut(s) 223, 1180
TspDTI ATGAA 7 cut(s) 48, 288, 668, 993, 1119, 1139, 1257
TspGWI ACGGA 1 cut(s) 935
TspRI CASTG 3 cut(s) 232, 306, 508
Tth111I GACNNNGTC 1 cut(s) 941
VneI GTGCAC 1 cut(s) 909
XapI RAATTY 3 cut(s) 418, 1392, 1444
XceI RCATGY 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 512
XspI CTAG 4 cut(s) 249, 527, 1073, 1416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.