Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004459

Physical Location & Seq

Genomic Coordinates Reverse (-)

42147003 .. 42148492

Gene Structure 1490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49916

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGCTTTGAACCTGATTCGGATTGCTTCCTATGAAGTTGAAAACCCCGTGGGCTGCTCTCTGAAGGAGGCCTTTGAGCTCCTTGAACCAAAACTAAGACCCCCATTGGCAATAACAATCCCAACCCCACAGGAATACTTGTTGCTCAACAAGGCTATTTTGTATGGAGTTCTATGCGAAACCCATTTTGCCAAAACACATATTAAGCATTTACATGCCATTGTCACTGATGGGTATGGCTTGTTTGCTAGTTTGATTGCTAAGGTTGTGAATGAATTGTACACGAAACTTGTTGACCCAGTGAAGTGCCAGTTGATTTGGGTTACTAAGGAGATGATTGATGTTCAGGCTGTAGGCATCCATGGTTTGTTGGTTTGTTTTCTGAGGCAAATTGTTGGTGGGGATTTTAGTGATGGAAATTTGTGGTTGTGTTTTGAGATCGTGAGCATTTTTTTGACCAAATGGGATTCTCTCTTGGAAGTAGAACCAATGATTTTGACCAGTGGATTGTATACATATCTTCGGCTAGTAGCTGATCACTATAGATTGCTAAGTAATGCAAAGTTGGAAGCGTTAAAGCAATTGGAAATTGATTTCTACATTAAAGTGTTAAGGGAGCAGTTTTCTGTCTGTTTAAAGATTGGGAGGGATCTTGTTCGGCTTCTACAAGACGTGGTTCATATACCAAACTTTAGAGCTACGTGGAAAGATTTGGTATTGAATCAAGGCAAGTTTAAGACTCCTGGTTTTTCTGTTATTTCGCAGCTCTATAACACAAGGACTTCAAGGAGTCAAAAGCGTTACCAGGCATGGTTTGCTAAGAAGTTTCTATGTGCACCAAACAGAGAGACTTTGATAGTTGACATTGTCCGTTTTATATGTTGTGCGCACCACCCACCAAATGAAATCATACAATCAGATATCATTCCAAGATGGGCTGTTGTAGGTTGGCTATTGAAATATTGCACAAAGAATTATGTCCAAGCCAATGTGAAACTAGCTCTACTTTATGATTGGCTATTCTTTGATGAAAGAGTAGATACTATAATGAATATTGAGCCTGCAATGCTACTGATAGTGTACTCTATACCCAGATACATTGATGTGACTCACACACTTCTTGAGTTTTTGTTCCTTCTTGTGGACAGTTATGATGTGGAACATAAAGATATAATTATTAGAGGCGTGTCTTCATCTCTTCGTGTACTTGTCAAGAAAGGAGTGATTCGCTCTTTTGATGTGTTAACATCTTGTGATGCACTTTCTCCTGTCTTGAAAGAGAGGCTTGATCGGTTTTTGTCAGGTGCGGAATTGGAAATTTATAAAAGGCTGGAACAAACTAGATTTCCCAGTCCCTTTGCTTTGGAGAATTCCTCTTGTATAGGAACTCCAACCCCATCACCAGAACGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ints3

Protein Analysis

471

Amino Acids

54.07

Weight (kDa)

7.9

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ints3_N	PF10189	45 - 263	3.3e-63	Integrator complex subunit 3 N-terminal
Ints3_N	PF10189	263 - 429	6.7e-70	Integrator complex subunit 3 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14590
fragaria_vesca	FvH4_3g28960
malus_domestica	MD00G1154100.v1.1 MD11G1194100.v1.1 MD15G1397300.v1.1
prunus_persica	Prupe.1G578000_v2.0.a1
pyrus_communis	pycom11g16260 pycom15g35700
rosa_chinensis	RchiOBHm_Chr2g0127281 RchiOBHm_Chr6g0255981 RchiOBHm_Chr6g0267091
rosa_laevigata	RLG00000014039 RLG00000014796 RLG00000034863
rosa_multiflora	Rmu_sc0002938.1_g000050 Rmu_sc0004659.1_g000003 Rmu_ssc0000388.1_g000011
rosa_roxburghii	Rroxscaffold_2G00116300 Rroxscaffold_7G00201030
rosa_rugosa	Rorug02G0275800
rosa_samantha	Rh2BG336100 Rh2DG353800 Rh5CG385400 Rh6AG150700 Rh6BG074000 Rh6BG151500 Rh6CG147100 Rh6DG135600
rosa_wichuraiana	Rw0G004690 Rw2G026530 Rw5G032980 Rw6G013060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1323
Acc16I	TGCGCA	1 cut(s)	888
AccI	GTMKAC	1 cut(s)	512
AciI	CCGC	1 cut(s)	1307
AclWI	GGATC	1 cut(s)	657
AcsI	RAATTY	3 cut(s)	418, 1317, 1369
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	3 cut(s)	281, 1082, 1206
AfiI	CCNNNNNNNGG	1 cut(s)	1141
AgsI	TTSAA	7 cut(s)	10, 41, 86, 721, 786, 958, 1276
AjiI	CACGTC	1 cut(s)	673
AjnI	CCWGG	2 cut(s)	742, 804
AluBI	AGCT	5 cut(s)	79, 533, 698, 766, 1001
AluI	AGCT	5 cut(s)	79, 533, 698, 766, 1001
Alw21I	GWGCWC	2 cut(s)	81, 838
Alw26I	GTCTC	1 cut(s)	842
Alw44I	GTGCAC	1 cut(s)	834
AlwI	GGATC	1 cut(s)	657
AoxI	GGCC	1 cut(s)	69
ApaLI	GTGCAC	1 cut(s)	834
ApeKI	GCWGC	2 cut(s)	54, 763
ApoI	RAATTY	3 cut(s)	418, 1317, 1369
AspLEI	GCGC	1 cut(s)	889
AsuHPI	GGTGA	1 cut(s)	1392
BaeGI	GKGCMC	1 cut(s)	838
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	1182
Bbv12I	GWGCWC	2 cut(s)	81, 838
BbvI	GCAGC	2 cut(s)	41, 775
BccI	CCATC	4 cut(s)	224, 407, 927, 1405
BciT130I	CCWGG	2 cut(s)	744, 806
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	842
BfaI	CTAG	4 cut(s)	249, 527, 998, 1341
BfmI	CTRYAG	2 cut(s)	351, 541
BisI	GCNGC	2 cut(s)	55, 764
BlsI	GCNGC	2 cut(s)	56, 765
Bme1390I	CCNGG	2 cut(s)	744, 806
BmgBI	CACGTC	1 cut(s)	673
BmrFI	CCNGG	2 cut(s)	744, 806
BmrI	ACTGGG	2 cut(s)	293, 1344
BmsI	GCATC	2 cut(s)	366, 1246
BmuI	ACTGGG	2 cut(s)	293, 1344
BpiI	GAAGAC	1 cut(s)	1182
BplI	GAGNNNNNCTC	2 cut(s)	1358, 1390
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	1142
BsaAI	YACGTR	1 cut(s)	702
BsaJI	CCNNGG	2 cut(s)	48, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	1141
Bse1I	ACTGG	4 cut(s)	299, 310, 501, 1350
Bse3DI	GCAATG	1 cut(s)	1071
BseBI	CCWGG	2 cut(s)	744, 806
BseDI	CCNNGG	2 cut(s)	48, 361
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	1141
BseMI	GCAATG	1 cut(s)	1071
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	4 cut(s)	299, 310, 501, 1350
BseSI	GKGCMC	1 cut(s)	838
BseXI	GCAGC	2 cut(s)	41, 775
BshFI	GGCC	1 cut(s)	71
BsiHKAI	GWGCWC	2 cut(s)	81, 838
BslFI	GGGAC	1 cut(s)	1338
BslI	CCNNNNNNNGG	1 cut(s)	1141
BsmAI	GTCTC	1 cut(s)	842
BsmFI	GGGAC	1 cut(s)	1338
BsnI	GGCC	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	81, 838
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	438, 535, 649, 1288
Bsp19I	CCATGG	1 cut(s)	361
BspACI	CCGC	1 cut(s)	1307
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	375
BspPI	GGATC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	1071
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	4 cut(s)	299, 310, 501, 1350
BssECI	CCNNGG	2 cut(s)	48, 361
BssMI	GATC	4 cut(s)	438, 535, 649, 1288
BssNAI	GTATAC	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	361
Bst1107I	GTATAC	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	744, 806
Bst4CI	ACNGT	1 cut(s)	1148
Bst6I	CTCTTC	1 cut(s)	1203
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstAUI	TGTACA	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	702
BstC8I	GCNNGC	1 cut(s)	1062
BstDEI	CTNAG	6 cut(s)	95, 261, 327, 383, 551, 819
BstDSI	CCRYGG	2 cut(s)	48, 361
BstF5I	GGATG	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	889
BstKTI	GATC	4 cut(s)	441, 538, 652, 1291
BstMAI	GTCTC	1 cut(s)	842
BstMBI	GATC	4 cut(s)	438, 535, 649, 1288
BstMWI	GCNNNNNNNGC	2 cut(s)	815, 1066
BstNI	CCWGG	2 cut(s)	744, 806
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	742, 804
BstSFI	CTRYAG	2 cut(s)	351, 541
BstSLI	GKGCMC	1 cut(s)	838
BstV1I	GCAGC	2 cut(s)	41, 775
BstV2I	GAAGAC	1 cut(s)	1182
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BstZ17I	GTATAC	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	2 cut(s)	48, 361
BtrI	CACGTC	1 cut(s)	673
BtsCI	GGATG	1 cut(s)	357
BtsIMutI	CAGTG	3 cut(s)	225, 306, 508
Cac8I	GCNNGC	1 cut(s)	1062
CfoI	GCGC	1 cut(s)	889
Csp6I	GTAC	3 cut(s)	280, 1081, 1205
CviAII	CATG	3 cut(s)	215, 362, 810
CviQI	GTAC	3 cut(s)	280, 1081, 1205
DdeI	CTNAG	6 cut(s)	95, 261, 327, 383, 551, 819
DpnI	GATC	4 cut(s)	440, 537, 651, 1290
DpnII	GATC	4 cut(s)	438, 535, 649, 1288
DraI	TTTAAA	1 cut(s)	636
Eam1104I	CTCTTC	1 cut(s)	1203
EarI	CTCTTC	1 cut(s)	1203
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	361
Eco147I	AGGCCT	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	922
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	1369
EcoRII	CCWGG	2 cut(s)	742, 804
EcoRV	GATATC	1 cut(s)	922
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	3 cut(s)	218, 365, 813
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 1269, 1301
FaqI	GGGAC	1 cut(s)	1338
FatI	CATG	3 cut(s)	214, 361, 809
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	512
Fnu4HI	GCNGC	2 cut(s)	55, 764
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	55, 764
FspAI	RTGCGCAY	1 cut(s)	888
FspBI	CTAG	4 cut(s)	249, 527, 998, 1341
FspI	TGCGCA	1 cut(s)	888
GlaI	GCGC	1 cut(s)	888
GluI	GCNGC	2 cut(s)	55, 764
HaeIII	GGCC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	889
Hin1II	CATG	3 cut(s)	218, 365, 813
Hin6I	GCGC	1 cut(s)	887
HinP1I	GCGC	1 cut(s)	887
HincII	GTYRAC	3 cut(s)	295, 862, 1245
HindII	GTYRAC	3 cut(s)	295, 862, 1245
HinfI	GANTC	7 cut(s)	16, 467, 721, 739, 790, 1108, 1225
HpaI	GTTAAC	1 cut(s)	1245
HphI	GGTGA	1 cut(s)	1392
Hpy166II	GTNNAC	9 cut(s)	282, 295, 513, 836, 862, 1081, 1144, 1205, 1245
Hpy188I	TCNGA	4 cut(s)	21, 63, 384, 919
Hpy188III	TCNNGA	4 cut(s)	442, 1121, 1213, 1273
Hpy8I	GTNNAC	9 cut(s)	282, 295, 513, 836, 862, 1081, 1144, 1205, 1245
HpyAV	CCTTC	2 cut(s)	58, 1145
HpyCH4III	ACNGT	1 cut(s)	1148
HpyCH4IV	ACGT	3 cut(s)	672, 701, 1408
HpyCH4V	TGCA	5 cut(s)	560, 836, 966, 1064, 1259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	815, 1066
HpyF3I	CTNAG	6 cut(s)	95, 261, 327, 383, 551, 819
HpySE526I	ACGT	3 cut(s)	672, 701, 1408
Hsp92II	CATG	3 cut(s)	218, 365, 813
HspAI	GCGC	1 cut(s)	887
Ksp22I	TGATCA	1 cut(s)	535
KspAI	GTTAAC	1 cut(s)	1245
Kzo9I	GATC	4 cut(s)	438, 535, 649, 1288
LmnI	GCTCC	2 cut(s)	84, 616
Lsp1109I	GCAGC	2 cut(s)	41, 775
LweI	GCATC	2 cut(s)	366, 1246
MaeI	CTAG	4 cut(s)	249, 527, 998, 1341
MaeII	ACGT	3 cut(s)	672, 701, 1408
MaeIII	GTNAC	4 cut(s)	223, 322, 800, 1105
MalI	GATC	4 cut(s)	440, 537, 651, 1290
MboI	GATC	4 cut(s)	438, 535, 649, 1288
MboII	GAAGA	3 cut(s)	512, 1182, 1190
MfeI	CAATTG	1 cut(s)	581
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	2 cut(s)	81, 838
MlyI	GAGTC	3 cut(s)	733, 799, 1102
MmeI	TCCRAC	2 cut(s)	546, 1415
MnlI	CCTC	6 cut(s)	61, 378, 639, 1175, 1275, 1384
MseI	TTAA	7 cut(s)	204, 575, 603, 611, 635, 735, 1244
MslI	CAYNNNNRTG	3 cut(s)	213, 605, 1103
MspR9I	CCNGG	2 cut(s)	744, 806
MunI	CAATTG	1 cut(s)	581
MvaI	CCWGG	2 cut(s)	744, 806
MwoI	GCNNNNNNNGC	2 cut(s)	815, 1066
NcoI	CCATGG	1 cut(s)	361
NdeII	GATC	4 cut(s)	438, 535, 649, 1288
NlaIII	CATG	3 cut(s)	218, 365, 813
NmuCI	GTSAC	2 cut(s)	223, 1105
NsbI	TGCGCA	1 cut(s)	888
NspI	RCATGY	1 cut(s)	218
PceI	AGGCCT	1 cut(s)	71
PfeI	GAWTC	4 cut(s)	16, 467, 721, 1225
PflFI	GACNNNGTC	1 cut(s)	866
PkrI	GCNGC	2 cut(s)	56, 765
PleI	GAGTC	3 cut(s)	733, 798, 1102
PpsI	GAGTC	3 cut(s)	733, 798, 1102
Ppu21I	YACGTR	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	1323
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	742, 804
PspGI	CCWGG	2 cut(s)	742, 804
PsuI	RGATCY	1 cut(s)	649
PsyI	GACNNNGTC	1 cut(s)	866
RsaI	GTAC	3 cut(s)	281, 1082, 1206
RsaNI	GTAC	3 cut(s)	280, 1081, 1205
RseI	CAYNNNNRTG	3 cut(s)	213, 605, 1103
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	7 cut(s)	204, 575, 603, 611, 635, 735, 1244
SatI	GCNGC	2 cut(s)	55, 764
Sau3AI	GATC	4 cut(s)	438, 535, 649, 1288
SchI	GAGTC	3 cut(s)	733, 799, 1102
ScrFI	CCNGG	2 cut(s)	744, 806
SduI	GDGCHC	2 cut(s)	81, 838
SfaNI	GCATC	2 cut(s)	366, 1246
SfcI	CTRYAG	2 cut(s)	351, 541
SmiMI	CAYNNNNRTG	3 cut(s)	213, 605, 1103
SmlI	CTYRAG	1 cut(s)	1121
SmoI	CTYRAG	1 cut(s)	1121
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	1 cut(s)	1307
SspI	AATATT	2 cut(s)	962, 1054
SspMI	CTAG	4 cut(s)	249, 527, 998, 1341
SstI	GAGCTC	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	742, 804
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	1148
TaiI	ACGT	3 cut(s)	675, 704, 1411
TatI	WGTACW	3 cut(s)	279, 1080, 1204
TfiI	GAWTC	4 cut(s)	16, 467, 721, 1225
Tru1I	TTAA	7 cut(s)	204, 575, 603, 611, 635, 735, 1244
Tru9I	TTAA	7 cut(s)	204, 575, 603, 611, 635, 735, 1244
TscAI	CASTG	3 cut(s)	232, 306, 508
TseFI	GTSAC	2 cut(s)	223, 1105
TseI	GCWGC	2 cut(s)	54, 763
Tsp45I	GTSAC	2 cut(s)	223, 1105
TspDTI	ATGAA	7 cut(s)	48, 288, 668, 918, 1044, 1064, 1182
TspGWI	ACGGA	1 cut(s)	860
TspRI	CASTG	3 cut(s)	232, 306, 508
Tth111I	GACNNNGTC	1 cut(s)	866
VneI	GTGCAC	1 cut(s)	834
XapI	RAATTY	3 cut(s)	418, 1317, 1369
XceI	RCATGY	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	512
XspI	CTAG	4 cut(s)	249, 527, 998, 1341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.