Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002938.1

Orthogroup ID

OG0004459

Physical Location & Seq

Genomic Coordinates Forward (+)

182822 .. 184219

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002938.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

atggctttgaacctgattcggattgcttcccatgaagctgaaaaccccgtgggctgctctctgaaggaggcctttgagctccttgaaccaaaactaagacccccattggcaataacaatcccaaccccacaggaatacttgctgctcaacaaggctattttgtatggggttctatgcgaaacccattttgccaaaacacatgttaagcatttacatgccattgtcaccgatgggtatggcttgtttgctagtttgattgctacggttgtgaatgaattgtacacgaaacttgttgacccagtgaaatgccagttgatttgggttactaaggagatgattgatgttcaggctgtaggcatccatggtttgttggtttgttttctgaggcaaattgttggtggggattttagtgatggaaatttgtggttgtgttttgagatcgtgagcatttttttgaccaaatgggattctctcttggaagtagaaccaatgattttgaccagtggattgtatacatatcttcggctagtagatgatcactatagattgctaagtaatgcaaagttggaagcgttaaagcaattggaaattgatttctgcattaaagagttaagggagcagttttctgtctgtttaaacattgggagggatcttgttcggctcctacaagatgtggttcatataccaaactttagagctatgtggaaagatctggtattgaatcaaggcaagtttaagactcctggtttttctattatttcacagctctataacacaaggacttcaagtcagtatattttacttcggatttcaccagaaatggagacacagttgcgatttttacttacttgcgtgaagttagggagtcaaaagcgttaccaggcatggtttgctatgaagtttctatgtgcaccaaacagagaggctttgatagttgacattgtccgttttatatgttgtgcacaccacccaccaaatgaaatcatacaatcagatatcattccaagatgggctgttgtaggttggctattgaaatattgcacaaagaattatgtccaagccaatgtgaaactagctctactttatgattggctattctttgatgaaagagtagataatataatgaatattgagcctgccatgctactgatggtgtactctatacccagatacattgatgtgactatcacacttcttgagtttttgttccttcttgtggacaattacgatgtggaacataaagatataattattagaggtgtgtcttcatctcttcgtgtacttgtcaagaaaggagtgattcgctcccttgatgtgttgacatcttgttatgcactttctcctgtcttgaaagagaggcttgataggtttttgtcaggtgcggaattggaaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ints3

Protein Analysis

465

Amino Acids

53.4

Weight (kDa)

6.61

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14590
fragaria_vesca	FvH4_3g28960
malus_domestica	MD00G1154100.v1.1 MD11G1194100.v1.1 MD15G1397300.v1.1
prunus_persica	Prupe.1G578000_v2.0.a1
pyrus_communis	pycom11g16260 pycom15g35700
rosa_chinensis	RchiOBHm_Chr2g0127281 RchiOBHm_Chr6g0255981 RchiOBHm_Chr6g0267091
rosa_laevigata	RLG00000014039 RLG00000014796 RLG00000034863
rosa_multiflora	Rmu_sc0002938.1_g000050 Rmu_sc0004659.1_g000003 Rmu_ssc0000388.1_g000011
rosa_roxburghii	Rroxscaffold_2G00116300 Rroxscaffold_7G00201030
rosa_rugosa	Rorug02G0275800
rosa_samantha	Rh2BG336100 Rh2DG353800 Rh5CG385400 Rh6AG150700 Rh6BG074000 Rh6BG151500 Rh6CG147100 Rh6DG135600
rosa_wichuraiana	Rw0G004690 Rw2G026530 Rw5G032980 Rw6G013060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	512
AciI	CCGC	1 cut(s)	1382
AclWI	GGATC	1 cut(s)	657
AcsI	RAATTY	2 cut(s)	418, 1392
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	3 cut(s)	281, 1157, 1281
AfiI	CCNNNNNNNGG	1 cut(s)	1216
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	6 cut(s)	10, 86, 721, 786, 1033, 1351
AhdI	GACNNNNNGTC	1 cut(s)	786
AjnI	CCWGG	2 cut(s)	742, 879
AluBI	AGCT	5 cut(s)	38, 79, 698, 766, 1076
AluI	AGCT	5 cut(s)	38, 79, 698, 766, 1076
Alw21I	GWGCWC	3 cut(s)	81, 913, 964
Alw26I	GTCTC	1 cut(s)	818
Alw44I	GTGCAC	2 cut(s)	909, 960
AlwI	GGATC	1 cut(s)	657
AoxI	GGCC	1 cut(s)	69
ApaLI	GTGCAC	2 cut(s)	909, 960
ApeKI	GCWGC	2 cut(s)	54, 142
ApoI	RAATTY	2 cut(s)	418, 1392
AsuHPI	GGTGA	2 cut(s)	217, 804
BaeGI	GKGCMC	2 cut(s)	913, 964
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	1257
Bbv12I	GWGCWC	3 cut(s)	81, 913, 964
BbvI	GCAGC	2 cut(s)	41, 129
BccI	CCATC	4 cut(s)	224, 407, 1002, 1144
BciT130I	CCWGG	2 cut(s)	744, 881
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	818
BfaI	CTAG	3 cut(s)	249, 527, 1073
BfmI	CTRYAG	2 cut(s)	351, 541
BglII	AGATCT	1 cut(s)	709
BisI	GCNGC	2 cut(s)	55, 143
BlsI	GCNGC	2 cut(s)	56, 144
Bme1390I	CCNGG	2 cut(s)	744, 881
BmeRI	GACNNNNNGTC	1 cut(s)	786
BmiI	GGNNCC	1 cut(s)	662
BmrFI	CCNGG	2 cut(s)	744, 881
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	1257
BpuEI	CTTGAG	1 cut(s)	1217
BsaJI	CCNNGG	2 cut(s)	48, 361
BsaXI	ACNNNNNCTCC	2 cut(s)	815, 845
Bsc4I	CCNNNNNNNGG	1 cut(s)	1216
Bse1I	ACTGG	3 cut(s)	299, 310, 501
BseBI	CCWGG	2 cut(s)	744, 881
BseDI	CCNNGG	2 cut(s)	48, 361
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	1216
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	3 cut(s)	299, 310, 501
BseSI	GKGCMC	2 cut(s)	913, 964
BseXI	GCAGC	2 cut(s)	41, 129
BshFI	GGCC	1 cut(s)	71
BsiHKAI	GWGCWC	3 cut(s)	81, 913, 964
BslI	CCNNNNNNNGG	1 cut(s)	1216
BsmAI	GTCTC	1 cut(s)	818
BsnI	GGCC	1 cut(s)	71
Bsp1286I	GDGCHC	3 cut(s)	81, 913, 964
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	438, 535, 649, 709
Bsp19I	CCATGG	1 cut(s)	361
BspACI	CCGC	1 cut(s)	1382
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	662
BspPI	GGATC	1 cut(s)	657
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	3 cut(s)	299, 310, 501
BssECI	CCNNGG	2 cut(s)	48, 361
BssMI	GATC	4 cut(s)	438, 535, 649, 709
BssNAI	GTATAC	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	361
Bst1107I	GTATAC	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	744, 881
Bst4CI	ACNGT	2 cut(s)	265, 831
Bst6I	CTCTTC	1 cut(s)	1278
BstAPI	GCANNNNNTGC	1 cut(s)	890
BstAUI	TGTACA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	1137
BstDEI	CTNAG	4 cut(s)	95, 327, 383, 551
BstDSI	CCRYGG	2 cut(s)	48, 361
BstF5I	GGATG	1 cut(s)	357
BstKTI	GATC	4 cut(s)	441, 538, 652, 712
BstMAI	GTCTC	1 cut(s)	818
BstMBI	GATC	4 cut(s)	438, 535, 649, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	890, 1141
BstNI	CCWGG	2 cut(s)	744, 881
BstNSI	RCATGY	2 cut(s)	203, 218
BstSCI	CCNGG	2 cut(s)	742, 879
BstSFI	CTRYAG	2 cut(s)	351, 541
BstSLI	GKGCMC	2 cut(s)	913, 964
BstV1I	GCAGC	2 cut(s)	41, 129
BstV2I	GAAGAC	1 cut(s)	1257
BstX2I	RGATCY	2 cut(s)	649, 709
BstYI	RGATCY	2 cut(s)	649, 709
BstZ17I	GTATAC	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	2 cut(s)	48, 361
BtsCI	GGATG	1 cut(s)	357
BtsIMutI	CAGTG	2 cut(s)	306, 508
Cac8I	GCNNGC	1 cut(s)	1137
Csp6I	GTAC	3 cut(s)	280, 1156, 1280
CviAII	CATG	6 cut(s)	32, 200, 215, 362, 885, 1141
CviQI	GTAC	3 cut(s)	280, 1156, 1280
DdeI	CTNAG	4 cut(s)	95, 327, 383, 551
DpnI	GATC	4 cut(s)	440, 537, 651, 711
DpnII	GATC	4 cut(s)	438, 535, 649, 709
DraI	TTTAAA	1 cut(s)	636
DriI	GACNNNNNGTC	1 cut(s)	786
Eam1104I	CTCTTC	1 cut(s)	1278
Eam1105I	GACNNNNNGTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	1278
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	361
Eco147I	AGGCCT	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	997
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	742, 879
EcoRV	GATATC	1 cut(s)	997
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	6 cut(s)	35, 203, 218, 365, 888, 1144
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 1344, 1376
FatI	CATG	6 cut(s)	31, 199, 214, 361, 884, 1140
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	512
Fnu4HI	GCNGC	2 cut(s)	55, 143
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	55, 143
FspBI	CTAG	3 cut(s)	249, 527, 1073
GluI	GCNGC	2 cut(s)	55, 143
HaeIII	GGCC	1 cut(s)	71
Hin1II	CATG	6 cut(s)	35, 203, 218, 365, 888, 1144
HincII	GTYRAC	3 cut(s)	295, 937, 1320
HindII	GTYRAC	3 cut(s)	295, 937, 1320
HinfI	GANTC	6 cut(s)	16, 467, 721, 739, 865, 1300
HphI	GGTGA	2 cut(s)	217, 804
Hpy188I	TCNGA	5 cut(s)	21, 63, 384, 807, 994
Hpy188III	TCNNGA	4 cut(s)	442, 1196, 1288, 1348
HpyAV	CCTTC	2 cut(s)	58, 1220
HpyCH4III	ACNGT	2 cut(s)	265, 831
HpyCH4V	TGCA	6 cut(s)	560, 600, 911, 962, 1041, 1334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	890, 1141
HpyF3I	CTNAG	4 cut(s)	95, 327, 383, 551
Hsp92II	CATG	6 cut(s)	35, 203, 218, 365, 888, 1144
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	438, 535, 649, 709
LmnI	GCTCC	4 cut(s)	84, 616, 666, 1310
Lsp1109I	GCAGC	2 cut(s)	41, 129
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	3 cut(s)	249, 527, 1073
MaeIII	GTNAC	4 cut(s)	223, 322, 875, 1180
MalI	GATC	4 cut(s)	440, 537, 651, 711
MboI	GATC	4 cut(s)	438, 535, 649, 709
MboII	GAAGA	3 cut(s)	512, 1257, 1265
MfeI	CAATTG	1 cut(s)	581
MflI	RGATCY	2 cut(s)	649, 709
MhlI	GDGCHC	3 cut(s)	81, 913, 964
MlyI	GAGTC	2 cut(s)	733, 874
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	6 cut(s)	61, 378, 639, 916, 1250, 1350
MseI	TTAA	6 cut(s)	204, 575, 603, 611, 635, 735
MslI	CAYNNNNRTG	2 cut(s)	213, 1178
MspR9I	CCNGG	2 cut(s)	744, 881
MssI	GTTTAAAC	1 cut(s)	636
MunI	CAATTG	1 cut(s)	581
MvaI	CCWGG	2 cut(s)	744, 881
MwoI	GCNNNNNNNGC	2 cut(s)	890, 1141
NcoI	CCATGG	1 cut(s)	361
NdeII	GATC	4 cut(s)	438, 535, 649, 709
NlaIII	CATG	6 cut(s)	35, 203, 218, 365, 888, 1144
NlaIV	GGNNCC	1 cut(s)	662
NmuCI	GTSAC	2 cut(s)	223, 1180
NspI	RCATGY	2 cut(s)	203, 218
PceI	AGGCCT	1 cut(s)	71
PciI	ACATGT	1 cut(s)	199
PfeI	GAWTC	4 cut(s)	16, 467, 721, 1300
PflFI	GACNNNGTC	1 cut(s)	941
PkrI	GCNGC	2 cut(s)	56, 144
PleI	GAGTC	2 cut(s)	733, 873
PmeI	GTTTAAAC	1 cut(s)	636
PpsI	GAGTC	2 cut(s)	733, 873
PscI	ACATGT	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	742, 879
PspGI	CCWGG	2 cut(s)	742, 879
PspN4I	GGNNCC	1 cut(s)	662
PsuI	RGATCY	2 cut(s)	649, 709
PsyI	GACNNNGTC	1 cut(s)	941
RsaI	GTAC	3 cut(s)	281, 1157, 1281
RsaNI	GTAC	3 cut(s)	280, 1156, 1280
RseI	CAYNNNNRTG	2 cut(s)	213, 1178
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	6 cut(s)	204, 575, 603, 611, 635, 735
SatI	GCNGC	2 cut(s)	55, 143
Sau3AI	GATC	4 cut(s)	438, 535, 649, 709
SchI	GAGTC	2 cut(s)	733, 874
ScrFI	CCNGG	2 cut(s)	744, 881
SduI	GDGCHC	3 cut(s)	81, 913, 964
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	2 cut(s)	351, 541
SmiMI	CAYNNNNRTG	2 cut(s)	213, 1178
SmlI	CTYRAG	1 cut(s)	1196
SmoI	CTYRAG	1 cut(s)	1196
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	1 cut(s)	1382
SspI	AATATT	2 cut(s)	1037, 1129
SspMI	CTAG	3 cut(s)	249, 527, 1073
SstI	GAGCTC	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	742, 879
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	265, 831
TatI	WGTACW	3 cut(s)	279, 1155, 1279
TfiI	GAWTC	4 cut(s)	16, 467, 721, 1300
Tru1I	TTAA	6 cut(s)	204, 575, 603, 611, 635, 735
Tru9I	TTAA	6 cut(s)	204, 575, 603, 611, 635, 735
TscAI	CASTG	2 cut(s)	306, 508
TseFI	GTSAC	2 cut(s)	223, 1180
TseI	GCWGC	2 cut(s)	54, 142
Tsp45I	GTSAC	2 cut(s)	223, 1180
TspDTI	ATGAA	8 cut(s)	48, 288, 668, 911, 993, 1119, 1139, 1257
TspGWI	ACGGA	1 cut(s)	935
TspRI	CASTG	2 cut(s)	306, 508
Tth111I	GACNNNGTC	1 cut(s)	941
VneI	GTGCAC	2 cut(s)	909, 960
XapI	RAATTY	2 cut(s)	418, 1392
XceI	RCATGY	2 cut(s)	203, 218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1147
XmiI	GTMKAC	1 cut(s)	512
XspI	CTAG	3 cut(s)	249, 527, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.