Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004659.1

Orthogroup ID

OG0004459

Physical Location & Seq

Genomic Coordinates Forward (+)

6380 .. 9427

Gene Structure 3048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004659.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgcaaggtacatccagctttagtctaacattgctaacaaggcttgtatttgcgagtcgtttgaggactggcaattctaaaggcagttcagccttggatccacattccgcatatatactggtggttaaactgaagactccactaaaagctgaaaaccccgtgggctgctctctgaaggaggcttttgagctccttggaccaaaactaagacccccattggcaataacaatcccaacctcacaggaatacttgctgctcaacaaggctattttgtatggagttctatgcgaaacccattttgccaagacacatattaagcatttacatgccattgtcaccgatgggtatggcttgtttgctagtttgattgctaaggttgtgaatgaattgtacacgaaacttgttgactcggtgaaatgccagttgatttgggttactaaggagatgattgatgttcaggctgtaggcatccatggtttgttggtttgttttctgaggcaaattgttggtggggattttagtgatggaaatttttggttgtgttttgagaccgtgagcatttttttgaccaaatgggattctctcttggaagtagaaccaatgattttgaccagtggattgtatacatatcttgcgctactagctgatcactatagattgctaagtaatccaaagttggaagcgttaaagcaattggaaattgatttctgcattaaagagttaagggagcagttttctgtctgtttaaacattgggagggatcttgttcggctcctacaagatgtggttcatataccaaactttagagctatgtggaaagatctggtattgaatcaaggcaagtttaagactcctggtttttctgttatttcgcagctctataacacaaggacttcaagtcagtatattttacttcggatttcaccagaaatggagacacagttgcgatttttacttacttgcgtgaagttaggcagtcaaaagcgttaccaggcatggctggaacaaactagatatcccagcccctttgctttggagaattcctcttgtatgggaactccaactccatcaccagaacagcagtctaaatgtagccaaggcgataggttttctgccaaatcagctgatacttctgttgggataataggtgatgcagcgtcttgtagtccattcacatgggagcggcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ints3

Protein Analysis

396

Amino Acids

44.42

Weight (kDa)

8.66

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14590
fragaria_vesca	FvH4_3g28960
malus_domestica	MD00G1154100.v1.1 MD11G1194100.v1.1 MD15G1397300.v1.1
prunus_persica	Prupe.1G578000_v2.0.a1
pyrus_communis	pycom11g16260 pycom15g35700
rosa_chinensis	RchiOBHm_Chr2g0127281 RchiOBHm_Chr6g0255981 RchiOBHm_Chr6g0267091
rosa_laevigata	RLG00000014039 RLG00000014796 RLG00000034863
rosa_multiflora	Rmu_sc0002938.1_g000050 Rmu_sc0004659.1_g000003 Rmu_ssc0000388.1_g000011
rosa_roxburghii	Rroxscaffold_2G00116300 Rroxscaffold_7G00201030
rosa_rugosa	Rorug02G0275800
rosa_samantha	Rh2BG336100 Rh2DG353800 Rh5CG385400 Rh6AG150700 Rh6BG074000 Rh6BG151500 Rh6CG147100 Rh6DG135600
rosa_wichuraiana	Rw0G004690 Rw2G026530 Rw5G032980 Rw6G013060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1183
AccI	GTMKAC	1 cut(s)	623
AciI	CCGC	2 cut(s)	108, 1183
AclWI	GGATC	3 cut(s)	92, 105, 768
AcsI	RAATTY	2 cut(s)	529, 1039
AcuI	CTGAAG	2 cut(s)	152, 194
AfaI	GTAC	2 cut(s)	10, 392
AgsI	TTSAA	2 cut(s)	832, 897
AhdI	GACNNNNNGTC	1 cut(s)	897
AjnI	CCWGG	2 cut(s)	853, 990
AloI	GAACNNNNNNTCC	2 cut(s)	1048, 1080
AluBI	AGCT	7 cut(s)	18, 149, 190, 644, 809, 877, 1124
AluI	AGCT	7 cut(s)	18, 149, 190, 644, 809, 877, 1124
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	2 cut(s)	542, 929
AlwI	GGATC	3 cut(s)	92, 105, 768
ApeKI	GCWGC	4 cut(s)	165, 253, 874, 1154
ApoI	RAATTY	2 cut(s)	529, 1039
AspLEI	GCGC	1 cut(s)	637
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	5 cut(s)	328, 424, 915, 1062, 1160
AvaII	GGWCC	1 cut(s)	197
BaeI	ACNNNNGTAYC	2 cut(s)	1119, 1152
BamHI	GGATCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	152, 240, 886, 1166
BccI	CCATC	3 cut(s)	335, 518, 1075
BciT130I	CCWGG	2 cut(s)	855, 992
BclI	TGATCA	1 cut(s)	646
BcoDI	GTCTC	2 cut(s)	542, 929
BfaI	CTAG	3 cut(s)	360, 641, 1011
BfmI	CTRYAG	2 cut(s)	462, 652
BglII	AGATCT	1 cut(s)	820
BisI	GCNGC	5 cut(s)	166, 254, 875, 1155, 1184
BlsI	GCNGC	5 cut(s)	167, 255, 876, 1156, 1185
Bme1390I	CCNGG	2 cut(s)	855, 992
Bme18I	GGWCC	1 cut(s)	197
BmeRI	GACNNNNNGTC	1 cut(s)	897
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	99, 773
BmrFI	CCNGG	2 cut(s)	855, 992
BmsI	GCATC	2 cut(s)	477, 1141
BpiI	GAAGAC	1 cut(s)	140
BplI	GAGNNNNNCTC	2 cut(s)	1028, 1060
Bpu10I	CCTNAGC	1 cut(s)	372
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	5 cut(s)	93, 159, 193, 472, 1096
BsaXI	ACNNNNNCTCC	4 cut(s)	926, 956, 1048, 1078
Bse1I	ACTGG	4 cut(s)	73, 123, 421, 612
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	855, 992
BseDI	CCNNGG	5 cut(s)	93, 159, 193, 472, 1096
BseGI	GGATG	2 cut(s)	11, 468
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	4 cut(s)	73, 123, 421, 612
BseXI	GCAGC	4 cut(s)	152, 240, 886, 1166
BseYI	CCCAGC	1 cut(s)	1019
BsiHKAI	GWGCWC	1 cut(s)	192
BsmAI	GTCTC	2 cut(s)	542, 929
Bso31I	GGTCTC	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	4 cut(s)	97, 646, 760, 820
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	2 cut(s)	108, 1183
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	99, 773
BspPI	GGATC	3 cut(s)	92, 105, 768
BspTNI	GGTCTC	1 cut(s)	542
BsrBI	CCGCTC	1 cut(s)	1183
BsrDI	GCAATG	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	4 cut(s)	73, 123, 421, 612
BssECI	CCNNGG	5 cut(s)	93, 159, 193, 472, 1096
BssMI	GATC	4 cut(s)	97, 646, 760, 820
BssNAI	GTATAC	1 cut(s)	624
BssT1I	CCWWGG	4 cut(s)	93, 193, 472, 1096
Bst1107I	GTATAC	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	855, 992
Bst4CI	ACNGT	2 cut(s)	553, 942
BstAUI	TGTACA	1 cut(s)	390
BstDEI	CTNAG	5 cut(s)	206, 372, 438, 494, 662
BstDSI	CCRYGG	2 cut(s)	159, 472
BstF5I	GGATG	2 cut(s)	11, 468
BstHHI	GCGC	1 cut(s)	637
BstKTI	GATC	4 cut(s)	100, 649, 763, 823
BstMAI	GTCTC	2 cut(s)	542, 929
BstMBI	GATC	4 cut(s)	97, 646, 760, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 641, 1121
BstNI	CCWGG	2 cut(s)	855, 992
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	853, 990
BstSFI	CTRYAG	2 cut(s)	462, 652
BstV1I	GCAGC	4 cut(s)	152, 240, 886, 1166
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	3 cut(s)	97, 760, 820
BstXI	CCANNNNNNTGG	1 cut(s)	1176
BstYI	RGATCY	3 cut(s)	97, 760, 820
BstZ17I	GTATAC	1 cut(s)	624
BtgI	CCRYGG	2 cut(s)	159, 472
BtsCI	GGATG	2 cut(s)	11, 468
BtsIMutI	CAGTG	2 cut(s)	619, 1186
CfoI	GCGC	1 cut(s)	637
Cfr13I	GGNCC	1 cut(s)	197
CseI	GACGC	1 cut(s)	1146
Csp6I	GTAC	2 cut(s)	9, 391
CviAII	CATG	4 cut(s)	326, 473, 996, 1176
CviQI	GTAC	2 cut(s)	9, 391
DdeI	CTNAG	5 cut(s)	206, 372, 438, 494, 662
DpnI	GATC	4 cut(s)	99, 648, 762, 822
DpnII	GATC	4 cut(s)	97, 646, 760, 820
DraI	TTTAAA	1 cut(s)	747
DriI	GACNNNNNGTC	1 cut(s)	897
Eam1105I	GACNNNNNGTC	1 cut(s)	897
Ecl136II	GAGCTC	1 cut(s)	190
Eco130I	CCWWGG	4 cut(s)	93, 193, 472, 1096
Eco24I	GRGCYC	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	542
Eco32I	GATATC	1 cut(s)	1016
Eco47I	GGWCC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	2 cut(s)	152, 194
EcoICRI	GAGCTC	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	1039
EcoRII	CCWGG	2 cut(s)	853, 990
EcoRV	GATATC	1 cut(s)	1016
EcoT14I	CCWWGG	4 cut(s)	93, 193, 472, 1096
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	4 cut(s)	93, 193, 472, 1096
FaeI	CATG	4 cut(s)	329, 476, 999, 1179
FatI	CATG	4 cut(s)	325, 472, 995, 1175
FbaI	TGATCA	1 cut(s)	646
FblI	GTMKAC	1 cut(s)	623
Fnu4HI	GCNGC	5 cut(s)	166, 254, 875, 1155, 1184
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	5 cut(s)	166, 254, 875, 1155, 1184
FspBI	CTAG	3 cut(s)	360, 641, 1011
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	5 cut(s)	166, 254, 875, 1155, 1184
GsaI	CCCAGC	1 cut(s)	1023
HgaI	GACGC	1 cut(s)	1146
HhaI	GCGC	1 cut(s)	637
Hin1II	CATG	4 cut(s)	329, 476, 999, 1179
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	6 cut(s)	55, 136, 407, 578, 832, 850
HphI	GGTGA	5 cut(s)	328, 424, 915, 1062, 1160
Hpy166II	GTNNAC	3 cut(s)	393, 406, 624
Hpy188I	TCNGA	3 cut(s)	174, 495, 918
Hpy8I	GTNNAC	3 cut(s)	393, 406, 624
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	553, 942
HpyCH4V	TGCA	3 cut(s)	4, 711, 1154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 641, 1121
HpyF3I	CTNAG	5 cut(s)	206, 372, 438, 494, 662
Hsp92II	CATG	4 cut(s)	329, 476, 999, 1179
HspAI	GCGC	1 cut(s)	635
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	4 cut(s)	97, 646, 760, 820
LmnI	GCTCC	4 cut(s)	195, 727, 777, 1180
Lsp1109I	GCAGC	4 cut(s)	152, 240, 886, 1166
LweI	GCATC	2 cut(s)	477, 1141
MaeI	CTAG	3 cut(s)	360, 641, 1011
MaeIII	GTNAC	3 cut(s)	334, 433, 986
MalI	GATC	4 cut(s)	99, 648, 762, 822
MbiI	CCGCTC	1 cut(s)	1183
MboI	GATC	4 cut(s)	97, 646, 760, 820
MboII	GAAGA	1 cut(s)	145
MfeI	CAATTG	1 cut(s)	692
MflI	RGATCY	3 cut(s)	97, 760, 820
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	7 cut(s)	73, 386, 501, 529, 692, 699, 1039
MlyI	GAGTC	4 cut(s)	64, 130, 401, 844
MmeI	TCCRAC	2 cut(s)	657, 1085
MnlI	CCTC	6 cut(s)	57, 172, 247, 489, 750, 1054
MseI	TTAA	7 cut(s)	126, 315, 686, 714, 722, 746, 846
MslI	CAYNNNNRTG	2 cut(s)	324, 1174
MspA1I	CMGCKG	1 cut(s)	1124
MspR9I	CCNGG	2 cut(s)	855, 992
MssI	GTTTAAAC	1 cut(s)	747
MunI	CAATTG	1 cut(s)	692
MvaI	CCWGG	2 cut(s)	855, 992
MwoI	GCNNNNNNNGC	3 cut(s)	40, 641, 1121
NcoI	CCATGG	1 cut(s)	472
NdeII	GATC	4 cut(s)	97, 646, 760, 820
NlaIII	CATG	4 cut(s)	329, 476, 999, 1179
NlaIV	GGNNCC	2 cut(s)	99, 773
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	578, 832
PkrI	GCNGC	5 cut(s)	167, 255, 876, 1156, 1185
PleI	GAGTC	4 cut(s)	63, 130, 401, 844
PmeI	GTTTAAAC	1 cut(s)	747
PpsI	GAGTC	4 cut(s)	63, 130, 401, 844
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	853, 990
PspFI	CCCAGC	1 cut(s)	1019
PspGI	CCWGG	2 cut(s)	853, 990
PspN4I	GGNNCC	2 cut(s)	99, 773
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	3 cut(s)	97, 760, 820
PvuII	CAGCTG	1 cut(s)	1124
RsaI	GTAC	2 cut(s)	10, 392
RsaNI	GTAC	2 cut(s)	9, 391
RseI	CAYNNNNRTG	2 cut(s)	324, 1174
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	7 cut(s)	126, 315, 686, 714, 722, 746, 846
SatI	GCNGC	5 cut(s)	166, 254, 875, 1155, 1184
Sau3AI	GATC	4 cut(s)	97, 646, 760, 820
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	4 cut(s)	64, 130, 401, 844
ScrFI	CCNGG	2 cut(s)	855, 992
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	2 cut(s)	477, 1141
SfcI	CTRYAG	2 cut(s)	462, 652
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	2 cut(s)	324, 1174
Sse9I	AATT	7 cut(s)	73, 386, 501, 529, 692, 699, 1039
SsiI	CCGC	2 cut(s)	108, 1183
SspMI	CTAG	3 cut(s)	360, 641, 1011
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	853, 990
StyI	CCWWGG	4 cut(s)	93, 193, 472, 1096
TaaI	ACNGT	2 cut(s)	553, 942
TasI	AATT	7 cut(s)	73, 386, 501, 529, 692, 699, 1039
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	1 cut(s)	1186
TfiI	GAWTC	2 cut(s)	578, 832
Tru1I	TTAA	7 cut(s)	126, 315, 686, 714, 722, 746, 846
Tru9I	TTAA	7 cut(s)	126, 315, 686, 714, 722, 746, 846
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	4 cut(s)	165, 253, 874, 1154
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	399, 779
TspRI	CASTG	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	529, 1039
XceI	RCATGY	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	623
XspI	CTAG	3 cut(s)	360, 641, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.