RchiOBHm_Chr6g0255981

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004459
Physical Location & Seq
Forward (+)
11398974 .. 11404239
5266 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22960

Sequence Viewer

Length: 1059 bp
ATGGCTTTGAACCTGATTCGGATTGCTTCCCATGAAGCTGAAAACCCTGTGGGCTGCTCTCTGAAGGAGGCCTTTGAGCTCCTTGAACCAAAACTAAGACCCCCATTGGCAATAACAATCCCAACCCCACAGGAATATTTGCTGCTCAACAAGGCTATTTTGTATGGAGTTCTATGCGAAACCCATTTTGCCAAAACACATATTAAGCATTTACATGCCATTGTCACCGATGGGTATGGCTTGTTTGCTAGTTTGATTGCTAAGGTTGTGAATGAATTGTACACGAAACTTGTTGACCCGGTGAAATGCCAGTTGATTTGGGTTACTAAGGAGATGATTCATGTTCAGGCTGTAGGCATCCATGGTTTGTTGGTTTGTTTTCTGAGGCAAATTGTTGGTGGGGATTTTAGTGATGGAAATTTGTGGTTGTGTTTTGAGATCGTGAGCATTTTTTTGACCAAATGGGATTCTCTCTTGGAAGTAGAACCAATGATTTTGACCAGTGGATTGTATACATATCTTTCGCTACTAGCTGATCACTATAGATTGCTAAGTAATCCAAAGTTGGAAGCGTTAAAGCAATTGGAAATTGATTTCTGCATTAAAGTGTTAAGGGAGCATTTTTCTGTCTGTTTAAAGATTGGGAGGGATCTTGTTCGGCTCCTACAAGATGTGGTTCATATACCAAACTTTAGAGCTACGTGGAAAGATCTGGTATTGAATCAAGGCAAGTTTAAGACTCCTGGTTTTTCTGTTATTTCGCAGCTCTATAACACAAGGACTTCAAGTCAGTATATTTTACTTCGGATTTCACCAGAAATGGAGACACAGTTGCAATTTTTACTTACTTATGTGAAGTTAGGGAGTCAAAAGCGTTACCAGGCATGGTTTGCTAAGAAGTTTCTATGTGCACCAAACAGAGAGACTTTGATAGTTGACATTGTCCGTTTTATATGTTGTGCACACCACCCACCAAATGAAATCATACAATCAGATATCATTCCAAGATGGGCTGTTGTAGGTTGGCTATTGAAATATTGCACAAAGAATTATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

352

Amino Acids

40.36

Weight (kDa)

8.66

Isoelectric Point (pI)

26.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 45 - 351 1.1e-111 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 512
AclWI GGATC 1 cut(s) 657
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 5 cut(s) 10, 86, 721, 786, 1033
AhdI GACNNNNNGTC 1 cut(s) 786
AjnI CCWGG 2 cut(s) 742, 879
AluBI AGCT 5 cut(s) 38, 79, 533, 698, 766
AluI AGCT 5 cut(s) 38, 79, 533, 698, 766
Alw21I GWGCWC 3 cut(s) 81, 913, 964
Alw26I GTCTC 2 cut(s) 818, 917
Alw44I GTGCAC 2 cut(s) 909, 960
AlwI GGATC 1 cut(s) 657
AoxI GGCC 1 cut(s) 69
ApaLI GTGCAC 2 cut(s) 909, 960
ApeKI GCWGC 3 cut(s) 54, 142, 763
ApoI RAATTY 1 cut(s) 418
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 3 cut(s) 217, 313, 804
BaeGI GKGCMC 2 cut(s) 913, 964
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 3 cut(s) 81, 913, 964
BbvI GCAGC 3 cut(s) 41, 129, 775
BccI CCATC 3 cut(s) 224, 407, 1002
BciT130I CCWGG 2 cut(s) 744, 881
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 818, 917
BfaI CTAG 2 cut(s) 249, 530
BfmI CTRYAG 2 cut(s) 351, 541
BglII AGATCT 1 cut(s) 709
BisI GCNGC 3 cut(s) 55, 143, 764
BlsI GCNGC 3 cut(s) 56, 144, 765
Bme1390I CCNGG 3 cut(s) 299, 744, 881
BmeRI GACNNNNNGTC 1 cut(s) 786
BmiI GGNNCC 1 cut(s) 662
BmrFI CCNGG 3 cut(s) 299, 744, 881
BmsI GCATC 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 815, 845
Bse1I ACTGG 2 cut(s) 310, 501
BseBI CCWGG 2 cut(s) 744, 881
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 1 cut(s) 357
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 2 cut(s) 310, 501
BseSI GKGCMC 2 cut(s) 913, 964
BseXI GCAGC 3 cut(s) 41, 129, 775
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 3 cut(s) 81, 913, 964
BsiSI CCGG 1 cut(s) 299
BsmAI GTCTC 2 cut(s) 818, 917
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 3 cut(s) 81, 913, 964
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 4 cut(s) 438, 535, 649, 709
Bsp19I CCATGG 1 cut(s) 361
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 662
BspPI GGATC 1 cut(s) 657
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 2 cut(s) 310, 501
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 4 cut(s) 438, 535, 649, 709
BssNAI GTATAC 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 361
Bst1107I GTATAC 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 744, 881
Bst4CI ACNGT 1 cut(s) 831
BstAPI GCANNNNNTGC 1 cut(s) 890
BstAUI TGTACA 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 702
BstDEI CTNAG 6 cut(s) 95, 261, 327, 383, 551, 894
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 4 cut(s) 441, 538, 652, 712
BstMAI GTCTC 2 cut(s) 818, 917
BstMBI GATC 4 cut(s) 438, 535, 649, 709
BstMWI GCNNNNNNNGC 1 cut(s) 890
BstNI CCWGG 2 cut(s) 744, 881
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 3 cut(s) 297, 742, 879
BstSFI CTRYAG 2 cut(s) 351, 541
BstSLI GKGCMC 2 cut(s) 913, 964
BstV1I GCAGC 3 cut(s) 41, 129, 775
BstX2I RGATCY 2 cut(s) 649, 709
BstYI RGATCY 2 cut(s) 649, 709
BstZ17I GTATAC 1 cut(s) 513
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 508
Csp6I GTAC 1 cut(s) 280
CviAII CATG 5 cut(s) 32, 215, 341, 362, 885
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 6 cut(s) 95, 261, 327, 383, 551, 894
DpnI GATC 4 cut(s) 440, 537, 651, 711
DpnII GATC 4 cut(s) 438, 535, 649, 709
DraI TTTAAA 1 cut(s) 636
DriI GACNNNNNGTC 1 cut(s) 786
Eam1105I GACNNNNNGTC 1 cut(s) 786
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 997
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 742, 879
EcoRV GATATC 1 cut(s) 997
EcoT14I CCWWGG 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 5 cut(s) 35, 218, 344, 365, 888
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FatI CATG 5 cut(s) 31, 214, 340, 361, 884
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 3 cut(s) 55, 143, 764
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 3 cut(s) 55, 143, 764
FspBI CTAG 2 cut(s) 249, 530
GluI GCNGC 3 cut(s) 55, 143, 764
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 299
Hin1II CATG 5 cut(s) 35, 218, 344, 365, 888
HincII GTYRAC 2 cut(s) 295, 937
HindII GTYRAC 2 cut(s) 295, 937
HinfI GANTC 6 cut(s) 16, 337, 467, 721, 739, 865
HpaII CCGG 1 cut(s) 299
HphI GGTGA 3 cut(s) 217, 313, 804
Hpy166II GTNNAC 6 cut(s) 282, 295, 513, 911, 937, 962
Hpy188I TCNGA 5 cut(s) 21, 63, 384, 807, 994
Hpy188III TCNNGA 1 cut(s) 442
Hpy8I GTNNAC 6 cut(s) 282, 295, 513, 911, 937, 962
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 831
HpyCH4IV ACGT 1 cut(s) 701
HpyCH4V TGCA 5 cut(s) 600, 835, 911, 962, 1041
HpyF10VI GCNNNNNNNGC 1 cut(s) 890
HpyF3I CTNAG 6 cut(s) 95, 261, 327, 383, 551, 894
HpySE526I ACGT 1 cut(s) 701
Hsp92II CATG 5 cut(s) 35, 218, 344, 365, 888
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 4 cut(s) 438, 535, 649, 709
LmnI GCTCC 3 cut(s) 84, 616, 666
Lsp1109I GCAGC 3 cut(s) 41, 129, 775
LweI GCATC 1 cut(s) 366
MaeI CTAG 2 cut(s) 249, 530
MaeII ACGT 1 cut(s) 701
MaeIII GTNAC 3 cut(s) 223, 322, 875
MalI GATC 4 cut(s) 440, 537, 651, 711
MboI GATC 4 cut(s) 438, 535, 649, 709
MfeI CAATTG 1 cut(s) 581
MflI RGATCY 2 cut(s) 649, 709
MhlI GDGCHC 3 cut(s) 81, 913, 964
MluCI AATT 7 cut(s) 275, 390, 418, 581, 588, 836, 1048
MlyI GAGTC 2 cut(s) 733, 874
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 3 cut(s) 61, 378, 639
MseI TTAA 6 cut(s) 204, 575, 603, 611, 635, 735
MslI CAYNNNNRTG 2 cut(s) 213, 605
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 3 cut(s) 299, 744, 881
MunI CAATTG 1 cut(s) 581
MvaI CCWGG 2 cut(s) 744, 881
MwoI GCNNNNNNNGC 1 cut(s) 890
NciI CCSGG 1 cut(s) 299
NcoI CCATGG 1 cut(s) 361
NdeII GATC 4 cut(s) 438, 535, 649, 709
NlaIII CATG 5 cut(s) 35, 218, 344, 365, 888
NlaIV GGNNCC 1 cut(s) 662
NmuCI GTSAC 1 cut(s) 223
NspI RCATGY 1 cut(s) 218
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 4 cut(s) 16, 337, 467, 721
PflFI GACNNNGTC 1 cut(s) 941
PkrI GCNGC 3 cut(s) 56, 144, 765
PleI GAGTC 2 cut(s) 733, 873
PpsI GAGTC 2 cut(s) 733, 873
Ppu21I YACGTR 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 742, 879
PspGI CCWGG 2 cut(s) 742, 879
PspN4I GGNNCC 1 cut(s) 662
PsuI RGATCY 2 cut(s) 649, 709
PsyI GACNNNGTC 1 cut(s) 941
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 2 cut(s) 213, 605
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 6 cut(s) 204, 575, 603, 611, 635, 735
SatI GCNGC 3 cut(s) 55, 143, 764
Sau3AI GATC 4 cut(s) 438, 535, 649, 709
SchI GAGTC 2 cut(s) 733, 874
ScrFI CCNGG 3 cut(s) 299, 744, 881
SduI GDGCHC 3 cut(s) 81, 913, 964
SetI ASST 9 cut(s) 15, 40, 81, 267, 535, 700, 704, 768, 1024
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 2 cut(s) 351, 541
SmiMI CAYNNNNRTG 2 cut(s) 213, 605
Sse9I AATT 7 cut(s) 275, 390, 418, 581, 588, 836, 1048
SseBI AGGCCT 1 cut(s) 71
SspI AATATT 2 cut(s) 137, 1037
SspMI CTAG 2 cut(s) 249, 530
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 3 cut(s) 297, 742, 879
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 831
TaiI ACGT 1 cut(s) 704
TasI AATT 7 cut(s) 275, 390, 418, 581, 588, 836, 1048
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 4 cut(s) 16, 337, 467, 721
Tru1I TTAA 6 cut(s) 204, 575, 603, 611, 635, 735
Tru9I TTAA 6 cut(s) 204, 575, 603, 611, 635, 735
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 3 cut(s) 54, 142, 763
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 5 cut(s) 48, 288, 329, 668, 993
TspGWI ACGGA 1 cut(s) 935
TspRI CASTG 1 cut(s) 508
Tth111I GACNNNGTC 1 cut(s) 941
VneI GTGCAC 2 cut(s) 909, 960
XapI RAATTY 1 cut(s) 418
XceI RCATGY 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 512
XspI CTAG 2 cut(s) 249, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.