Rw0G004690

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00175
OG0004459
Physical Location & Seq
Reverse (-)
27266 .. 28180
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004690.1

Sequence Viewer

Length: 915 bp
ATGATTTTGACCAGTGGATTGTATACATATCTTCCGCTACTAGCTGATCACTATAGATTGCTAAGTAATCCAAAGTTGGAAGCGTTAAAGCAATTGGAAGTTGATTTCTGCATTAAAGTGTTAAGGGAGCAGTTTTCTGTCTGTTTAAAGATTGGGAGGGATCTTGTTCGGCTCCTACAAGATGTGGTTCATATACCAAACTTTAGAGCTACGTGGAAAGATCTGGTATTGAATCAAGGCAAGTTTAAGACTCCTGGTTTTTCTGTTATTTCGCAGCTCTATAACACAAGGACTTCAAGTCAGTATATTTTACTTCGGATTTCACCAGAAATGGAGACACAGTTGCGATTTTTACTTACTTGTGTGAAGTTAGGGAGTCAAAAGCGTTACCAGGCATGGTTTGCAAAGAAGTTTCTATGTGCACCAAATAGAGAGACTTTGATAGTTGACATTGTCCGTTTTATATGTTGTGCACACCACCCACCAAATGAAATCATACAATCAGATATCATTCTAAGATGGGCTGTTGTAGGTTGGCTATTGAAATATTGCACAAAGAATTATGTCCAAGCCAATATGAAACTAGCTCTACTTTATGATTGGCTATTCTTTGATGAAAGAGTAGATAATATAATGAATATTGAGCCTGCAATGCTACTGATGGTGTACTCTATACCCAGATACATTGATGTGACTCACACACTGCTTGAGTTTTTGTTCCTTGTGGACAATTATGATGTGGAACATAAAGATATAATTATTAGAGGTGTGTCTTCATCTCTTCGTGTACTTGTCAAGAAAGGAGTGATTCGCTCCCTTGATGTGTTGACATCTTGTGATGCACTTTCTCCTGTCTTGAAAGAGAGGCTTGATAGGTTTTTGAATTGGAAATTTCTAAAGGCTGGAACAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

304

Amino Acids

35.47

Weight (kDa)

9.18

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 2 - 290 3.4e-116 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 23
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 1 cut(s) 890
AfaI GTAC 2 cut(s) 668, 789
AgsI TTSAA 5 cut(s) 232, 297, 544, 859, 883
AhdI GACNNNNNGTC 1 cut(s) 297
AjnI CCWGG 2 cut(s) 253, 390
AluBI AGCT 4 cut(s) 44, 209, 277, 587
AluI AGCT 4 cut(s) 44, 209, 277, 587
Alw21I GWGCWC 2 cut(s) 424, 475
Alw26I GTCTC 2 cut(s) 329, 428
Alw44I GTGCAC 2 cut(s) 420, 471
AlwI GGATC 1 cut(s) 168
ApaLI GTGCAC 2 cut(s) 420, 471
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 1 cut(s) 890
AsuHPI GGTGA 1 cut(s) 315
BaeGI GKGCMC 2 cut(s) 424, 475
BbsI GAAGAC 1 cut(s) 765
Bbv12I GWGCWC 2 cut(s) 424, 475
BbvI GCAGC 1 cut(s) 286
BccI CCATC 2 cut(s) 513, 655
BciT130I CCWGG 2 cut(s) 255, 392
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 329, 428
BfaI CTAG 3 cut(s) 41, 584, 913
BfmI CTRYAG 1 cut(s) 52
BglII AGATCT 1 cut(s) 220
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme1390I CCNGG 2 cut(s) 255, 392
BmeRI GACNNNNNGTC 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 2 cut(s) 255, 392
BmsI GCATC 1 cut(s) 829
BpiI GAAGAC 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 728
BsaAI YACGTR 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bse1I ACTGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 657
BseBI CCWGG 2 cut(s) 255, 392
BseMI GCAATG 1 cut(s) 657
BseNI ACTGG 1 cut(s) 12
BseSI GKGCMC 2 cut(s) 424, 475
BseXI GCAGC 1 cut(s) 286
BsiHKAI GWGCWC 2 cut(s) 424, 475
BsmAI GTCTC 2 cut(s) 329, 428
Bsp1286I GDGCHC 2 cut(s) 424, 475
Bsp143I GATC 3 cut(s) 46, 160, 220
BspACI CCGC 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 173
BspPI GGATC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 657
BsrI ACTGG 1 cut(s) 12
BssMI GATC 3 cut(s) 46, 160, 220
BssNAI GTATAC 1 cut(s) 24
Bst1107I GTATAC 1 cut(s) 24
Bst2UI CCWGG 2 cut(s) 255, 392
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 786
BstAPI GCANNNNNTGC 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 648
BstDEI CTNAG 2 cut(s) 62, 515
BstKTI GATC 3 cut(s) 49, 163, 223
BstMAI GTCTC 2 cut(s) 329, 428
BstMBI GATC 3 cut(s) 46, 160, 220
BstMWI GCNNNNNNNGC 2 cut(s) 401, 652
BstNI CCWGG 2 cut(s) 255, 392
BstSCI CCNGG 2 cut(s) 253, 390
BstSFI CTRYAG 1 cut(s) 52
BstSLI GKGCMC 2 cut(s) 424, 475
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 765
BstX2I RGATCY 2 cut(s) 160, 220
BstYI RGATCY 2 cut(s) 160, 220
BstZ17I GTATAC 1 cut(s) 24
BtsI GCAGTG 1 cut(s) 701
BtsIMutI CAGTG 2 cut(s) 19, 701
Cac8I GCNNGC 1 cut(s) 648
Csp6I GTAC 2 cut(s) 667, 788
CviAII CATG 1 cut(s) 396
CviQI GTAC 2 cut(s) 667, 788
DdeI CTNAG 2 cut(s) 62, 515
DpnI GATC 3 cut(s) 48, 162, 222
DpnII GATC 3 cut(s) 46, 160, 220
DraI TTTAAA 1 cut(s) 147
DriI GACNNNNNGTC 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 786
Eam1105I GACNNNNNGTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 786
Eco32I GATATC 1 cut(s) 508
EcoRII CCWGG 2 cut(s) 253, 390
EcoRV GATATC 1 cut(s) 508
FaeI CATG 1 cut(s) 399
FalI AAGNNNNNCTT 2 cut(s) 852, 884
FatI CATG 1 cut(s) 395
FbaI TGATCA 1 cut(s) 46
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 275
FspBI CTAG 3 cut(s) 41, 584, 913
GluI GCNGC 1 cut(s) 275
Hin1II CATG 1 cut(s) 399
HincII GTYRAC 2 cut(s) 448, 828
HindII GTYRAC 2 cut(s) 448, 828
HinfI GANTC 5 cut(s) 232, 250, 376, 694, 808
HphI GGTGA 1 cut(s) 315
Hpy166II GTNNAC 8 cut(s) 24, 422, 448, 473, 667, 727, 788, 828
Hpy188I TCNGA 2 cut(s) 318, 505
Hpy188III TCNNGA 2 cut(s) 796, 856
Hpy8I GTNNAC 8 cut(s) 24, 422, 448, 473, 667, 727, 788, 828
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 7 cut(s) 111, 404, 422, 473, 552, 650, 842
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 652
HpyF3I CTNAG 2 cut(s) 62, 515
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 1 cut(s) 399
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 3 cut(s) 46, 160, 220
LmnI GCTCC 3 cut(s) 127, 177, 818
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 1 cut(s) 829
MaeI CTAG 3 cut(s) 41, 584, 913
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 386, 691
MalI GATC 3 cut(s) 48, 162, 222
MboI GATC 3 cut(s) 46, 160, 220
MboII GAAGA 3 cut(s) 23, 765, 773
MfeI CAATTG 1 cut(s) 92
MflI RGATCY 2 cut(s) 160, 220
MhlI GDGCHC 2 cut(s) 424, 475
MluCI AATT 6 cut(s) 92, 559, 730, 756, 883, 890
MlyI GAGTC 3 cut(s) 244, 385, 688
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 3 cut(s) 150, 758, 858
MseI TTAA 5 cut(s) 86, 114, 122, 146, 246
MslI CAYNNNNRTG 2 cut(s) 116, 689
MspR9I CCNGG 2 cut(s) 255, 392
MunI CAATTG 1 cut(s) 92
MvaI CCWGG 2 cut(s) 255, 392
MwoI GCNNNNNNNGC 2 cut(s) 401, 652
NdeII GATC 3 cut(s) 46, 160, 220
NlaIII CATG 1 cut(s) 399
NlaIV GGNNCC 1 cut(s) 173
NmuCI GTSAC 1 cut(s) 691
PfeI GAWTC 2 cut(s) 232, 808
PflFI GACNNNGTC 1 cut(s) 452
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 3 cut(s) 244, 384, 688
PpsI GAGTC 3 cut(s) 244, 384, 688
Ppu21I YACGTR 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 253, 390
PspGI CCWGG 2 cut(s) 253, 390
PspN4I GGNNCC 1 cut(s) 173
PsuI RGATCY 2 cut(s) 160, 220
PsyI GACNNNGTC 1 cut(s) 452
RsaI GTAC 2 cut(s) 668, 789
RsaNI GTAC 2 cut(s) 667, 788
RseI CAYNNNNRTG 2 cut(s) 116, 689
SaqAI TTAA 5 cut(s) 86, 114, 122, 146, 246
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 3 cut(s) 46, 160, 220
SchI GAGTC 3 cut(s) 244, 385, 688
ScrFI CCNGG 2 cut(s) 255, 392
SduI GDGCHC 2 cut(s) 424, 475
SetI ASST 8 cut(s) 46, 211, 215, 279, 535, 589, 769, 878
SfaNI GCATC 1 cut(s) 829
SfcI CTRYAG 1 cut(s) 52
SmiMI CAYNNNNRTG 2 cut(s) 116, 689
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
Sse9I AATT 6 cut(s) 92, 559, 730, 756, 883, 890
SsiI CCGC 1 cut(s) 35
SspI AATATT 2 cut(s) 548, 640
SspMI CTAG 3 cut(s) 41, 584, 913
StyD4I CCNGG 2 cut(s) 253, 390
TaaI ACNGT 1 cut(s) 342
TaiI ACGT 1 cut(s) 215
TasI AATT 6 cut(s) 92, 559, 730, 756, 883, 890
TatI WGTACW 2 cut(s) 666, 787
TfiI GAWTC 2 cut(s) 232, 808
Tru1I TTAA 5 cut(s) 86, 114, 122, 146, 246
Tru9I TTAA 5 cut(s) 86, 114, 122, 146, 246
TscAI CASTG 2 cut(s) 19, 708
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 6 cut(s) 179, 504, 593, 630, 650, 765
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 2 cut(s) 19, 708
Tth111I GACNNNGTC 1 cut(s) 452
VneI GTGCAC 2 cut(s) 420, 471
XapI RAATTY 1 cut(s) 890
XmiI GTMKAC 1 cut(s) 23
XspI CTAG 3 cut(s) 41, 584, 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.