FvH4_3g28960

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004459
Physical Location & Seq
Reverse (-)
22062337 .. 22069345
7009 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28960.t1

Sequence Viewer

Length: 1386 bp
ATGGCTTTGAAACTGATCAAACTCGCTTCCTTCAAAGCCGAAAACCCAACTGAACTCTCTCTGAGGCAAGCCTTTGAGCTTCTTGAACCGAAACTCAGACCCCCATTTGCATTAAGGCTCCTAAACCCAGAAGAATACAATCTGCTCATTAAGGCCATACTCTATGGGGTTTTATGTGAACCCCATTTGGCCAAAACCCATTTTAAGCACTTACATGCCATTGTCTCTGATGGGTATGGCTTGTTTGTTAGTTCAGTTGTTCAGGTTGTGAATGAGTTATATGTGAATCTTGTTGAGCCAGTCAAGTTCCAATTGATTAGTGTTGCCATTGAGATGATTGATGTTCAGGCCGTTGGAGTTCATGGGTTGTTGGTTTGTTTGTTGAGGCAAATTGTTGGTGGGGACTTCAGTGACGGAAATCTGTGGTTGTGTTTTGAGTTGGTGAGCATTTTTTTGTCCAAATGGAATTATCTGTTAGAAGTCGAACCCATGATTTTGACTAGCGGGTTGTATACGTTTCTGCGGTTATTAGCTGATCATTGTAGGCTTTCAAGTAATCCAAAATTGGAGGCATTGAAGCATTTAGAGATTGAGTTTTGTGTTAGACTTTTAAGGGAGCAGTTTTCTTTGTGTTTGAAGATTGGGAAGGATCTTGTTCGGCTCTTACAAGATTTGGTTCATTTACCCGAGTTTAGAGCTATATGGAAAGGCTTAGTCTTGAATCAGGGGGAGTTTAAGACTCCCACATTGTTTGATATTTCACAGCTGTATTACACAGCGACTCCAGGTTGGTATGCTTTGCTTCGGATTACTCCAGAAATCGAGACCCAATTGCGGTTTTTACTCAGTTATGTCAAATTGGGGAGCCAGAAACTTTACCAGGTATGGTTTGCTAAGAAATTCCTAAGTGAACCACATAGAGAGACTTTGATCATTGACATTGTTCGTTTTATTTGTTGTGCACACCACCCACCAAATGAAATTATTCAATCTGATGTCATTCCAAGATGGGCCGTTATTGGTTGGCTATTAAAATCGTGCACGAGGAGTTCTGTTTCAGCCAGTGTGAAACTGGCTCTTGTTTACGATTGGCTTTTCTTTGACGAAAGCGTAGACAGTGTTATGAATATTGAGCCTGCAATGTTATTGATGGCATATTCTATTCCAAGGTACATTGATGTAACTCACACGCTCCTTGAATTTTTGTTTCTTCTTGTGGACAACTATGATGTGAATCATCATGATATTATTGTTAAAGGCGTATTATCATCATTTAGTGTACTGGTGAAGAAAGGAGTGATTCACTCACTTGATGTCTTGACCTGTTGTGATTCACTTACTCCTATCTTGAGAAAAAGACTTGGTAGCTTTTTGCCTGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

462

Amino Acids

52.68

Weight (kDa)

6.94

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 45 - 454 1e-144 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 512, 1113
AciI CCGC 3 cut(s) 504, 523, 835
AclWI GGATC 1 cut(s) 657
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 2 cut(s) 899, 1199
AcuI CTGAAG 1 cut(s) 391
AfaI GTAC 2 cut(s) 1172, 1281
AfiI CCNNNNNNNGG 1 cut(s) 834
AgsI TTSAA 9 cut(s) 10, 34, 86, 552, 577, 637, 721, 989, 1199
AjnI CCWGG 3 cut(s) 784, 879, 1375
AluBI AGCT 5 cut(s) 79, 533, 698, 766, 1368
AluI AGCT 5 cut(s) 79, 533, 698, 766, 1368
Alw21I GWGCWC 2 cut(s) 964, 1043
Alw26I GTCTC 3 cut(s) 229, 818, 917
Alw44I GTGCAC 2 cut(s) 960, 1039
AlwI GGATC 1 cut(s) 657
Ama87I CYCGRG 1 cut(s) 686
AoxI GGCC 4 cut(s) 153, 189, 348, 1011
ApaLI GTGCAC 2 cut(s) 960, 1039
ApoI RAATTY 2 cut(s) 899, 1199
Asp700I GAANNNNTTC 1 cut(s) 984
AspS9I GGNCC 1 cut(s) 1011
AsuHPI GGTGA 2 cut(s) 454, 1297
AvaI CYCGRG 1 cut(s) 686
BaeGI GKGCMC 2 cut(s) 964, 1043
BalI TGGCCA 1 cut(s) 191
BauI CACGAG 1 cut(s) 1042
Bbv12I GWGCWC 2 cut(s) 964, 1043
BccI CCATC 3 cut(s) 224, 1002, 1144
BceAI ACGGC 2 cut(s) 335, 998
BciT130I CCWGG 3 cut(s) 786, 881, 1377
BclI TGATCA 3 cut(s) 15, 535, 930
BcoDI GTCTC 3 cut(s) 229, 818, 917
BfaI CTAG 1 cut(s) 501
Bme1390I CCNGG 3 cut(s) 786, 881, 1377
BmeT110I CYCGRG 1 cut(s) 686
BmgT120I GGNCC 1 cut(s) 1011
BmiI GGNNCC 2 cut(s) 119, 866
BmrFI CCNGG 3 cut(s) 786, 881, 1377
BpmI CTGGAG 2 cut(s) 768, 798
BpuEI CTTGAG 1 cut(s) 1369
BsaBI GATNNNNATC 1 cut(s) 1233
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 1 cut(s) 1166
BsaXI ACNNNNNCTCC 2 cut(s) 766, 796
Bsc4I CCNNNNNNNGG 1 cut(s) 834
Bse1I ACTGG 4 cut(s) 299, 1062, 1077, 1287
Bse3DI GCAATG 1 cut(s) 1146
Bse8I GATNNNNATC 1 cut(s) 1233
BseBI CCWGG 3 cut(s) 786, 881, 1377
BseDI CCNNGG 1 cut(s) 1166
BseJI GATNNNNATC 1 cut(s) 1233
BseLI CCNNNNNNNGG 1 cut(s) 834
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 3 cut(s) 53, 109, 859
BseNI ACTGG 4 cut(s) 299, 1062, 1077, 1287
BseRI GAGGAG 1 cut(s) 1060
BseSI GKGCMC 2 cut(s) 964, 1043
BshFI GGCC 4 cut(s) 155, 191, 350, 1013
BsiHKAI GWGCWC 2 cut(s) 964, 1043
BsiHKCI CYCGRG 1 cut(s) 686
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 1 cut(s) 834
BsmAI GTCTC 3 cut(s) 229, 818, 917
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 4 cut(s) 155, 191, 350, 1013
Bso31I GGTCTC 1 cut(s) 818
BsoBI CYCGRG 1 cut(s) 686
Bsp1286I GDGCHC 2 cut(s) 964, 1043
Bsp143I GATC 4 cut(s) 15, 535, 649, 930
BspACI CCGC 3 cut(s) 504, 523, 835
BspANI GGCC 4 cut(s) 155, 191, 350, 1013
BspCNI CTCAG 3 cut(s) 54, 108, 858
BspHI TCATGA 1 cut(s) 1240
BspLI GGNNCC 2 cut(s) 119, 866
BspPI GGATC 1 cut(s) 657
BspTNI GGTCTC 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 1146
BsrI ACTGG 4 cut(s) 299, 1062, 1077, 1287
BssECI CCNNGG 1 cut(s) 1166
BssMI GATC 4 cut(s) 15, 535, 649, 930
BssNAI GTATAC 1 cut(s) 513
BssSI CACGAG 1 cut(s) 1042
BssT1I CCWWGG 1 cut(s) 1166
Bst1107I GTATAC 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 1042
Bst2UI CCWGG 3 cut(s) 786, 881, 1377
Bst4CI ACNGT 1 cut(s) 1118
BstC8I GCNNGC 2 cut(s) 69, 1137
BstDEI CTNAG 6 cut(s) 62, 95, 712, 845, 894, 905
BstKTI GATC 4 cut(s) 18, 538, 652, 933
BstMAI GTCTC 3 cut(s) 229, 818, 917
BstMBI GATC 4 cut(s) 15, 535, 649, 930
BstNI CCWGG 3 cut(s) 786, 881, 1377
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 3 cut(s) 784, 879, 1375
BstSLI GKGCMC 2 cut(s) 964, 1043
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BstZ17I GTATAC 1 cut(s) 513
BsuRI GGCC 4 cut(s) 155, 191, 350, 1013
BtsIMutI CAGTG 3 cut(s) 415, 1069, 1123
Cac8I GCNNGC 2 cut(s) 69, 1137
CciI TCATGA 1 cut(s) 1240
Cfr13I GGNCC 1 cut(s) 1011
CsiI ACCWGGT 1 cut(s) 879
Csp6I GTAC 2 cut(s) 1171, 1280
CspCI CAANNNNNGTGG 2 cut(s) 733, 768
CviAII CATG 4 cut(s) 215, 362, 490, 1241
CviQI GTAC 2 cut(s) 1171, 1280
DdeI CTNAG 6 cut(s) 62, 95, 712, 845, 894, 905
DpnI GATC 4 cut(s) 17, 537, 651, 932
DpnII GATC 4 cut(s) 15, 535, 649, 930
EaeI YGGCCR 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 1166
Eco31I GGTCTC 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 686
EcoRII CCWGG 3 cut(s) 784, 879, 1375
EcoT14I CCWWGG 1 cut(s) 1166
ErhI CCWWGG 1 cut(s) 1166
FaeI CATG 4 cut(s) 218, 365, 493, 1244
FaqI GGGAC 1 cut(s) 416
FatI CATG 4 cut(s) 214, 361, 489, 1240
FauI CCCGC 1 cut(s) 497
FbaI TGATCA 3 cut(s) 15, 535, 930
FblI GTMKAC 2 cut(s) 512, 1113
FspBI CTAG 1 cut(s) 501
GsuI CTGGAG 2 cut(s) 768, 798
HaeIII GGCC 4 cut(s) 155, 191, 350, 1013
Hin1II CATG 4 cut(s) 218, 365, 493, 1244
HinfI GANTC 7 cut(s) 286, 721, 739, 781, 1234, 1300, 1331
HphI GGTGA 2 cut(s) 454, 1297
Hpy166II GTNNAC 9 cut(s) 179, 513, 911, 962, 1041, 1084, 1114, 1219, 1280
Hpy188I TCNGA 5 cut(s) 63, 98, 229, 807, 994
Hpy188III TCNNGA 7 cut(s) 83, 718, 815, 823, 1241, 1318, 1348
Hpy8I GTNNAC 9 cut(s) 179, 513, 911, 962, 1041, 1084, 1114, 1219, 1280
HpyAV CCTTC 2 cut(s) 40, 640
HpyCH4III ACNGT 1 cut(s) 1118
HpyCH4IV ACGT 1 cut(s) 515
HpyCH4V TGCA 4 cut(s) 110, 962, 1041, 1139
HpyF3I CTNAG 6 cut(s) 62, 95, 712, 845, 894, 905
HpySE526I ACGT 1 cut(s) 515
Hsp92II CATG 4 cut(s) 218, 365, 493, 1244
Ksp22I TGATCA 3 cut(s) 15, 535, 930
Kzo9I GATC 4 cut(s) 15, 535, 649, 930
LmnI GCTCC 4 cut(s) 123, 616, 864, 1197
MabI ACCWGGT 1 cut(s) 879
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 515
MaeIII GTNAC 2 cut(s) 410, 1180
MalI GATC 4 cut(s) 17, 537, 651, 932
MboI GATC 4 cut(s) 15, 535, 649, 930
MboII GAAGA 4 cut(s) 143, 649, 1202, 1300
MfeI CAATTG 2 cut(s) 311, 830
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 2 cut(s) 964, 1043
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 9 cut(s) 311, 390, 466, 563, 830, 857, 899, 981, 1199
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 2 cut(s) 733, 775
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 4 cut(s) 57, 378, 562, 1038
Mox20I TGGCCA 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 984
MscI TGGCCA 1 cut(s) 191
MseI TTAA 7 cut(s) 113, 150, 204, 611, 735, 1031, 1254
MslI CAYNNNNRTG 2 cut(s) 213, 332
Msp20I TGGCCA 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 766
MspR9I CCNGG 3 cut(s) 786, 881, 1377
MunI CAATTG 2 cut(s) 311, 830
MvaI CCWGG 3 cut(s) 786, 881, 1377
NdeII GATC 4 cut(s) 15, 535, 649, 930
NlaIII CATG 4 cut(s) 218, 365, 493, 1244
NlaIV GGNNCC 2 cut(s) 119, 866
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 1 cut(s) 218
PagI TCATGA 1 cut(s) 1240
PdmI GAANNNNTTC 1 cut(s) 984
PfeI GAWTC 5 cut(s) 286, 721, 1234, 1300, 1331
PleI GAGTC 2 cut(s) 733, 775
PpsI GAGTC 2 cut(s) 733, 775
Psp6I CCWGG 3 cut(s) 784, 879, 1375
PspGI CCWGG 3 cut(s) 784, 879, 1375
PspN4I GGNNCC 2 cut(s) 119, 866
PspPI GGNCC 1 cut(s) 1011
PsuI RGATCY 1 cut(s) 649
PvuII CAGCTG 1 cut(s) 766
RsaI GTAC 2 cut(s) 1172, 1281
RsaNI GTAC 2 cut(s) 1171, 1280
RseI CAYNNNNRTG 2 cut(s) 213, 332
SaqAI TTAA 7 cut(s) 113, 150, 204, 611, 735, 1031, 1254
Sau3AI GATC 4 cut(s) 15, 535, 649, 930
Sau96I GGNCC 1 cut(s) 1011
SchI GAGTC 2 cut(s) 733, 775
ScrFI CCNGG 3 cut(s) 786, 881, 1377
SduI GDGCHC 2 cut(s) 964, 1043
SexAI ACCWGGT 1 cut(s) 879
SmiMI CAYNNNNRTG 2 cut(s) 213, 332
SmlI CTYRAG 1 cut(s) 1348
SmoI CTYRAG 1 cut(s) 1348
Sse9I AATT 9 cut(s) 311, 390, 466, 563, 830, 857, 899, 981, 1199
SsiI CCGC 3 cut(s) 504, 523, 835
SspI AATATT 1 cut(s) 1129
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 3 cut(s) 784, 879, 1375
StyI CCWWGG 1 cut(s) 1166
TaaI ACNGT 1 cut(s) 1118
TaiI ACGT 1 cut(s) 518
TaqI TCGA 2 cut(s) 483, 822
TasI AATT 9 cut(s) 311, 390, 466, 563, 830, 857, 899, 981, 1199
TatI WGTACW 1 cut(s) 1279
TfiI GAWTC 5 cut(s) 286, 721, 1234, 1300, 1331
Tru1I TTAA 7 cut(s) 113, 150, 204, 611, 735, 1031, 1254
Tru9I TTAA 7 cut(s) 113, 150, 204, 611, 735, 1031, 1254
TscAI CASTG 3 cut(s) 415, 1069, 1123
TseFI GTSAC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 4 cut(s) 350, 668, 993, 1139
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 3 cut(s) 415, 1069, 1123
VneI GTGCAC 2 cut(s) 960, 1039
XapI RAATTY 2 cut(s) 899, 1199
XceI RCATGY 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 1069
XmiI GTMKAC 2 cut(s) 512, 1113
XmnI GAANNNNTTC 1 cut(s) 984
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.