Rh2DG353800

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004459
Physical Location & Seq
Forward (+)
49536124 .. 49542567
6444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG353800.1

Sequence Viewer

Length: 1387 bp
ATGAGCTTTGTAATCCATTCTGATTGTAGTAAGCCCACTCCTAGACTCACTGTTGCAAATGCTCCCCATGCTATTGGCACATTATCAGTAGCCTCATTGAACTTCCATTGCTCATGCTCACAGGTGGTTAAACTGAAGACTCCACTGAAAGCTGAAAACCCCATGGGCTGCTCTCTGAAGGAGGCCTTTGAGCTCCTTGAACCAAAACTAAGACCCCCATTGGCAATAACAATCCCAACCCCACAGGAATACTTGCTGCTCAACAAGGCTATTTTGTATGGAGTTCTATGCGAAACCCATTTTGCCAAAACACATATTAAGCATTTACATGCCATTGTCATTGATGGGTATGGCTTGTTTGCTAGTTTGATTGCTAAGGTTGTGAATGAATTGTACACGAAACTTGTTGACCCAGTGAAGTGCCAGTTGATTTGGGTTACTAAGGAGATGATTGATGTTCAGGCTGTAGGCATCCATGGTTTGTTGGTTTGTTTTCTGAGGCAAATTGTTGGTGGGGATTTTAGTGATGGAAATTTGTGGTTGTGTTTTGAGATCGTGAGCATTTTTTTGACCAAATGGGATTCTCTCTTGGAAGTAGAACCAATGATTTTGACTAGTGGATTGTATACATATCTTCGGCTAGTAGCTGATCACTATAGATTGCTAAGTAATGCAAAGTTGGAAGCGTTAAAGCAATTGGAAATTGATTTCTGCATTAAAGTGTTAAGGGAGCAGTTTTCTGTCTGTTTAAAGGTTGGGAGGGATCTTGTTCGGCTTCTACAAGATGTGGTTCATATACCAAACTTTAGAGCTACGTGGAAAGATTTGGTATTGAATCAAGGCAAGTTTAAGACTCCTGGTTTTTGTGTTATTTCGCAGCTCTATAACACAAGGACTTCAAGTGAATATATTTTACTTGGGATTTCACCAGAAATGGAGACACAGTTGCGGTTTTTACTTACTTGCGTGAAGTTAGGGAGTCAAAAGCGTTACCAAGCATGTTATGATGTGGAACATAAAGATATAATTATTAGAGGCGTGTCTTCATCTCTTCGTGTACTTGTCAAGAAAGGAGTGATTCGCTCCTTTGATGTGCTGACATCTTGTGATGCACTTTCTCCTGTCTTGAAAGAGAGGCTTGATAGGTTTTTGTCAGGTGCGGAATTGGAAATTTATAAAAGGCTGGAACAAACTAGATTTCCCAATCCCTTTGCTTTGGAGAATTCCTCTTGTATGGGAACTCCGACCCCATCACCAGAACGTGAACGAGATAGATTTGCTATAAGATCAGCTGATACTTCTGTTATGATATCAGATTTGCAACAGGCTCATTTTCTGGGTCACTCCGTGGGAACTCCTACACCATCACCAGAACAGCAGTCTAAAT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

462

Amino Acids

51.95

Weight (kDa)

8.52

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 83 - 333 2.6e-76 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1176
AccI GTMKAC 1 cut(s) 626
AciI CCGC 2 cut(s) 949, 1160
AclWI GGATC 1 cut(s) 771
AcsI RAATTY 3 cut(s) 532, 1170, 1222
AcuI CTGAAG 2 cut(s) 155, 197
AdeI CACNNNGTG 1 cut(s) 1348
AfaI GTAC 2 cut(s) 395, 1059
AgsI TTSAA 5 cut(s) 100, 200, 835, 900, 1129
AhlI ACTAGT 1 cut(s) 614
AjnI CCWGG 1 cut(s) 856
AluBI AGCT 7 cut(s) 6, 152, 193, 647, 812, 880, 1292
AluI AGCT 7 cut(s) 6, 152, 193, 647, 812, 880, 1292
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 932
AlwI GGATC 1 cut(s) 771
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 3 cut(s) 168, 256, 877
ApoI RAATTY 3 cut(s) 532, 1170, 1222
AsuHPI GGTGA 3 cut(s) 918, 1245, 1359
BaeI ACNNNNGTAYC 2 cut(s) 1287, 1320
BanII GRGCYC 1 cut(s) 195
BbsI GAAGAC 2 cut(s) 143, 1035
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 3 cut(s) 155, 243, 889
BccI CCATC 4 cut(s) 338, 521, 1258, 1372
BciT130I CCWGG 1 cut(s) 858
BclI TGATCA 1 cut(s) 649
BcoDI GTCTC 1 cut(s) 932
BcuI ACTAGT 1 cut(s) 614
BfaI CTAG 5 cut(s) 42, 363, 615, 641, 1194
BfmI CTRYAG 2 cut(s) 465, 655
BisI GCNGC 3 cut(s) 169, 257, 878
BlsI GCNGC 3 cut(s) 170, 258, 879
Bme1390I CCNGG 1 cut(s) 858
BmrFI CCNGG 1 cut(s) 858
BmrI ACTGGG 1 cut(s) 407
BmsI GCATC 2 cut(s) 480, 1099
BmuI ACTGGG 1 cut(s) 407
BpiI GAAGAC 2 cut(s) 143, 1035
BplI GAGNNNNNCTC 2 cut(s) 1211, 1243
Bpu10I CCTNAGC 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 816
BsaJI CCNNGG 3 cut(s) 162, 475, 1347
BsaXI ACNNNNNCTCC 2 cut(s) 929, 959
Bse1I ACTGG 2 cut(s) 413, 424
Bse3DI GCAATG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 3 cut(s) 162, 475, 1347
BseGI GGATG 1 cut(s) 471
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 488
BseNI ACTGG 2 cut(s) 413, 424
BseXI GCAGC 3 cut(s) 155, 243, 889
BshFI GGCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 932
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 195
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 4 cut(s) 552, 649, 763, 1286
Bsp19I CCATGG 2 cut(s) 162, 475
BspACI CCGC 2 cut(s) 949, 1160
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 489
BspPI GGATC 1 cut(s) 771
BsrDI GCAATG 1 cut(s) 106
BsrGI TGTACA 1 cut(s) 393
BsrI ACTGG 2 cut(s) 413, 424
BssECI CCNNGG 3 cut(s) 162, 475, 1347
BssMI GATC 4 cut(s) 552, 649, 763, 1286
BssNAI GTATAC 1 cut(s) 627
BssT1I CCWWGG 2 cut(s) 162, 475
Bst1107I GTATAC 1 cut(s) 627
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 2 cut(s) 52, 945
Bst6I CTCTTC 1 cut(s) 1056
BstAUI TGTACA 1 cut(s) 393
BstBAI YACGTR 1 cut(s) 816
BstDEI CTNAG 5 cut(s) 209, 375, 441, 497, 665
BstDSI CCRYGG 3 cut(s) 162, 475, 1347
BstF5I GGATG 1 cut(s) 471
BstKTI GATC 4 cut(s) 555, 652, 766, 1289
BstMAI GTCTC 1 cut(s) 932
BstMBI GATC 4 cut(s) 552, 649, 763, 1286
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 858
BstNSI RCATGY 2 cut(s) 332, 1002
BstSCI CCNGG 1 cut(s) 856
BstSFI CTRYAG 2 cut(s) 465, 655
BstV1I GCAGC 3 cut(s) 155, 243, 889
BstV2I GAAGAC 2 cut(s) 143, 1035
BstX2I RGATCY 1 cut(s) 763
BstXI CCANNNNNNTGG 1 cut(s) 74
BstYI RGATCY 1 cut(s) 763
BstZ17I GTATAC 1 cut(s) 627
BsuRI GGCC 1 cut(s) 185
BtgI CCRYGG 3 cut(s) 162, 475, 1347
BtsCI GGATG 1 cut(s) 471
BtsIMutI CAGTG 3 cut(s) 48, 143, 420
Csp6I GTAC 2 cut(s) 394, 1058
CviAII CATG 6 cut(s) 68, 114, 163, 329, 476, 999
CviQI GTAC 2 cut(s) 394, 1058
DdeI CTNAG 5 cut(s) 209, 375, 441, 497, 665
DpnI GATC 4 cut(s) 554, 651, 765, 1288
DpnII GATC 4 cut(s) 552, 649, 763, 1286
DraI TTTAAA 1 cut(s) 750
DraIII CACNNNGTG 1 cut(s) 1348
Eam1104I CTCTTC 1 cut(s) 1056
EarI CTCTTC 1 cut(s) 1056
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 162, 475
Eco147I AGGCCT 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 195
Eco32I GATATC 1 cut(s) 1311
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 2 cut(s) 155, 197
EcoICRI GAGCTC 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 1222
EcoRII CCWGG 1 cut(s) 856
EcoRV GATATC 1 cut(s) 1311
EcoT14I CCWWGG 2 cut(s) 162, 475
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 2 cut(s) 162, 475
FaeI CATG 6 cut(s) 71, 117, 166, 332, 479, 1002
FalI AAGNNNNNCTT 4 cut(s) 170, 202, 1122, 1154
FatI CATG 6 cut(s) 67, 113, 162, 328, 475, 998
FbaI TGATCA 1 cut(s) 649
FblI GTMKAC 1 cut(s) 626
Fnu4HI GCNGC 3 cut(s) 169, 257, 878
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 3 cut(s) 169, 257, 878
FspBI CTAG 5 cut(s) 42, 363, 615, 641, 1194
GluI GCNGC 3 cut(s) 169, 257, 878
HaeIII GGCC 1 cut(s) 185
Hin1II CATG 6 cut(s) 71, 117, 166, 332, 479, 1002
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 7 cut(s) 45, 139, 581, 835, 853, 979, 1078
HphI GGTGA 3 cut(s) 918, 1245, 1359
Hpy166II GTNNAC 5 cut(s) 396, 409, 627, 1058, 1265
Hpy188I TCNGA 5 cut(s) 22, 177, 498, 1245, 1315
Hpy188III TCNNGA 3 cut(s) 556, 1066, 1126
Hpy8I GTNNAC 5 cut(s) 396, 409, 627, 1058, 1265
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 52, 945
HpyCH4IV ACGT 2 cut(s) 815, 1261
HpyCH4V TGCA 5 cut(s) 56, 674, 714, 1112, 1321
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 5 cut(s) 209, 375, 441, 497, 665
HpySE526I ACGT 2 cut(s) 815, 1261
Hsp92II CATG 6 cut(s) 71, 117, 166, 332, 479, 1002
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 4 cut(s) 552, 649, 763, 1286
LmnI GCTCC 4 cut(s) 67, 198, 730, 1088
Lsp1109I GCAGC 3 cut(s) 155, 243, 889
LweI GCATC 2 cut(s) 480, 1099
MaeI CTAG 5 cut(s) 42, 363, 615, 641, 1194
MaeII ACGT 2 cut(s) 815, 1261
MaeIII GTNAC 3 cut(s) 436, 989, 1340
MalI GATC 4 cut(s) 554, 651, 765, 1288
MboI GATC 4 cut(s) 552, 649, 763, 1286
MboII GAAGA 4 cut(s) 148, 626, 1035, 1043
MfeI CAATTG 1 cut(s) 695
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 9 cut(s) 389, 504, 532, 695, 702, 1026, 1163, 1170, 1222
MlyI GAGTC 4 cut(s) 39, 133, 847, 988
MmeI TCCRAC 2 cut(s) 660, 1268
MnlI CCTC 7 cut(s) 103, 175, 492, 753, 1028, 1128, 1237
MseI TTAA 7 cut(s) 129, 318, 689, 717, 725, 749, 849
MslI CAYNNNNRTG 2 cut(s) 327, 719
MspA1I CMGCKG 1 cut(s) 1292
MspR9I CCNGG 1 cut(s) 858
MunI CAATTG 1 cut(s) 695
MvaI CCWGG 1 cut(s) 858
MwoI GCNNNNNNNGC 1 cut(s) 68
NcoI CCATGG 2 cut(s) 162, 475
NdeII GATC 4 cut(s) 552, 649, 763, 1286
NlaIII CATG 6 cut(s) 71, 117, 166, 332, 479, 1002
NmuCI GTSAC 1 cut(s) 1340
NspI RCATGY 2 cut(s) 332, 1002
PceI AGGCCT 1 cut(s) 185
PfeI GAWTC 3 cut(s) 581, 835, 1078
PkrI GCNGC 3 cut(s) 170, 258, 879
PleI GAGTC 4 cut(s) 39, 133, 847, 987
PpsI GAGTC 4 cut(s) 39, 133, 847, 987
Ppu21I YACGTR 1 cut(s) 816
PsiI TTATAA 1 cut(s) 1176
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 856
PspGI CCWGG 1 cut(s) 856
PsuI RGATCY 1 cut(s) 763
PvuII CAGCTG 1 cut(s) 1292
RsaI GTAC 2 cut(s) 395, 1059
RsaNI GTAC 2 cut(s) 394, 1058
RseI CAYNNNNRTG 2 cut(s) 327, 719
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 7 cut(s) 129, 318, 689, 717, 725, 749, 849
SatI GCNGC 3 cut(s) 169, 257, 878
Sau3AI GATC 4 cut(s) 552, 649, 763, 1286
SchI GAGTC 4 cut(s) 39, 133, 847, 988
ScrFI CCNGG 1 cut(s) 858
SduI GDGCHC 1 cut(s) 195
SfaNI GCATC 2 cut(s) 480, 1099
SfcI CTRYAG 2 cut(s) 465, 655
SmiMI CAYNNNNRTG 2 cut(s) 327, 719
SpeI ACTAGT 1 cut(s) 614
Sse9I AATT 9 cut(s) 389, 504, 532, 695, 702, 1026, 1163, 1170, 1222
SseBI AGGCCT 1 cut(s) 185
SsiI CCGC 2 cut(s) 949, 1160
SspMI CTAG 5 cut(s) 42, 363, 615, 641, 1194
SstI GAGCTC 1 cut(s) 195
StuI AGGCCT 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 856
StyI CCWWGG 2 cut(s) 162, 475
TaaI ACNGT 2 cut(s) 52, 945
TaiI ACGT 2 cut(s) 818, 1264
TasI AATT 9 cut(s) 389, 504, 532, 695, 702, 1026, 1163, 1170, 1222
TatI WGTACW 2 cut(s) 393, 1057
TfiI GAWTC 3 cut(s) 581, 835, 1078
Tru1I TTAA 7 cut(s) 129, 318, 689, 717, 725, 749, 849
Tru9I TTAA 7 cut(s) 129, 318, 689, 717, 725, 749, 849
TscAI CASTG 3 cut(s) 55, 150, 420
TseFI GTSAC 1 cut(s) 1340
TseI GCWGC 3 cut(s) 168, 256, 877
Tsp45I GTSAC 1 cut(s) 1340
TspDTI ATGAA 3 cut(s) 402, 782, 1035
TspGWI ACGGA 1 cut(s) 1336
TspRI CASTG 3 cut(s) 55, 150, 420
XapI RAATTY 3 cut(s) 532, 1170, 1222
XceI RCATGY 2 cut(s) 332, 1002
XmiI GTMKAC 1 cut(s) 626
XspI CTAG 5 cut(s) 42, 363, 615, 641, 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.