Rh6BG074000

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0004459
Physical Location & Seq
Forward (+)
11233370 .. 11234776
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG074000.1

Sequence Viewer

Length: 1407 bp
ATGGCTTTGAACCTGATTCGAACTGCTTCCCATGAAGCTGAAAACCCCGTGGGCTGCTCTCTGAAGGAGGCCTTTGAGCTCCTTGAACCAAAACTAAGACCCCCATTGGCAATAACAATCCCAACCTCACAGGAATACTTGCTGCTCAACAAGGCTATTTTATATGGAGTTCTGTGCGAAACCCATTTTGCCAAAACACATATTAAGCATTTACATGCCATTGTCACCGATGGGTATGGCTTGTTTGCTAGTTTGATTGCTAAGGTTGTGAATGAATTGTACACGAAACTTGTTGACTCGGTGAAATGCCAGTTGATTTGGGTTACTAAGGAGATGATTGATGTTCAGGCTGTAGGCATCCATGGTTTGTTGGTTTGTTTTCTGAGACAAATTGTTGGTGGGGATTTTAGTGATGGAAATTTGTGGTTGTGTTTTGAGACTATGAGCATTTTTTTGACCAAATGGGATTCTCTCTTGGAAGTAGAACCAATGATTTTGACCAGTGGATTGTATACATATCTTTCGCTACTAGCTGATCACTATAGATTGCTAAGTAATCCAAAGTTGGAAGCGTTAAAGCAATTGGAAGTTGATTTCTGCATTAAAGTGTTAAGGGAGCAGTTTTCTGTCTGTTTAAAGATTGGGAGGGATCTTGTTCGGCTCCTACAAGATGTGGTTCATATACCAAACTTTAGAGCTACGTGGAAAGATCTGGTATTGAATCAAGGCAAGTTTAAGACTCCTGGTTTTTCTGTTATTTCGCAGCTCTATAACACAAGGACTTCAAGTCAGTATATTTTACTTCGGATTTCACCAGAAATGGAGACACAGTTGCGATTTTTACTTACTTGTGTTAAGTTAGGGAGTCAAAAGCGTTACCAGGCATGGTTTGCTAAGAAGTTTCTATGTGCACCAAATAGAGAGACTTTGATAGTTGACATTGTCCGTTTTATATGTTGTGCACACCACCCACCAAATGAAATCATACAATCAGATATCATTCCAAGATGGGCTGTTGTAGGTTGGCTATTGAAATATTGCACAAAGAATTATGTCCAAGCCAATATGAAACTAGCTCTATTTTATGATTGGCTATTCTTTGATGAAAGAGTAGATAATGTAATGAATATTGAGCCAGCAATGCTACTGATGGTGTACTCTATACCCAGATACATTGATGTGACTCACACACTTCTTGAGTTTTTGTTCCTTCTTGTGGACAATTATGATGTGGAACATAAAGATATAATTATTAGAGGTGTGTCTTCATCTCTTCGTGTACTTGTCAAGAAAGGAGTGATTCGCTCCCTTGATGTGTTGACATCTTGTGATGCACTTTCTCCTGTCTTGAAAGAGAGGCTTGATAGGTTTTTGAATTGGAAATTTCTAAAGGCTGGAACAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

468

Amino Acids

53.79

Weight (kDa)

8.44

Isoelectric Point (pI)

28.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 45 - 454 2.1e-154 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 512
AclWI GGATC 1 cut(s) 657
AcsI RAATTY 2 cut(s) 418, 1382
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 3 cut(s) 281, 1157, 1281
AfiI CCNNNNNNNGG 1 cut(s) 1216
AgsI TTSAA 7 cut(s) 10, 86, 721, 786, 1033, 1351, 1375
AhdI GACNNNNNGTC 1 cut(s) 786
AjnI CCWGG 2 cut(s) 742, 879
AluBI AGCT 6 cut(s) 38, 79, 533, 698, 766, 1076
AluI AGCT 6 cut(s) 38, 79, 533, 698, 766, 1076
Alw21I GWGCWC 3 cut(s) 81, 913, 964
Alw26I GTCTC 4 cut(s) 379, 431, 818, 917
Alw44I GTGCAC 2 cut(s) 909, 960
AlwI GGATC 1 cut(s) 657
AoxI GGCC 1 cut(s) 69
ApaLI GTGCAC 2 cut(s) 909, 960
ApeKI GCWGC 3 cut(s) 54, 142, 763
ApoI RAATTY 2 cut(s) 418, 1382
Asp700I GAANNNNTTC 1 cut(s) 25
AsuHPI GGTGA 3 cut(s) 217, 313, 804
AsuII TTCGAA 1 cut(s) 19
BaeGI GKGCMC 2 cut(s) 913, 964
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 1257
Bbv12I GWGCWC 3 cut(s) 81, 913, 964
BbvI GCAGC 3 cut(s) 41, 129, 775
BccI CCATC 4 cut(s) 224, 407, 1002, 1144
BciT130I CCWGG 2 cut(s) 744, 881
BclI TGATCA 1 cut(s) 535
BcoDI GTCTC 4 cut(s) 379, 431, 818, 917
BfaI CTAG 4 cut(s) 249, 530, 1073, 1405
BfmI CTRYAG 2 cut(s) 351, 541
BglII AGATCT 1 cut(s) 709
BisI GCNGC 3 cut(s) 55, 143, 764
BlsI GCNGC 3 cut(s) 56, 144, 765
Bme1390I CCNGG 2 cut(s) 744, 881
BmeRI GACNNNNNGTC 1 cut(s) 786
BmiI GGNNCC 1 cut(s) 662
BmrFI CCNGG 2 cut(s) 744, 881
BmsI GCATC 2 cut(s) 366, 1321
BpiI GAAGAC 1 cut(s) 1257
Bpu10I CCTNAGC 1 cut(s) 261
Bpu14I TTCGAA 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 1217
BsaAI YACGTR 1 cut(s) 702
BsaJI CCNNGG 2 cut(s) 48, 361
BsaXI ACNNNNNCTCC 2 cut(s) 815, 845
Bsc4I CCNNNNNNNGG 1 cut(s) 1216
Bse1I ACTGG 2 cut(s) 310, 501
Bse3DI GCAATG 1 cut(s) 1146
BseBI CCWGG 2 cut(s) 744, 881
BseDI CCNNGG 2 cut(s) 48, 361
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 1216
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 2 cut(s) 310, 501
BseSI GKGCMC 2 cut(s) 913, 964
BseXI GCAGC 3 cut(s) 41, 129, 775
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 3 cut(s) 81, 913, 964
BslI CCNNNNNNNGG 1 cut(s) 1216
BsmAI GTCTC 4 cut(s) 379, 431, 818, 917
BsnI GGCC 1 cut(s) 71
Bsp119I TTCGAA 1 cut(s) 19
Bsp1286I GDGCHC 3 cut(s) 81, 913, 964
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 3 cut(s) 535, 649, 709
Bsp19I CCATGG 1 cut(s) 361
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 662
BspPI GGATC 1 cut(s) 657
BspT104I TTCGAA 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 1146
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 2 cut(s) 310, 501
BssECI CCNNGG 2 cut(s) 48, 361
BssMI GATC 3 cut(s) 535, 649, 709
BssNAI GTATAC 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 361
Bst1107I GTATAC 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 744, 881
Bst4CI ACNGT 1 cut(s) 831
Bst6I CTCTTC 1 cut(s) 1278
BstAPI GCANNNNNTGC 1 cut(s) 890
BstAUI TGTACA 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 702
BstBI TTCGAA 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 1137
BstDEI CTNAG 6 cut(s) 95, 261, 327, 383, 551, 894
BstDSI CCRYGG 2 cut(s) 48, 361
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 3 cut(s) 538, 652, 712
BstMAI GTCTC 4 cut(s) 379, 431, 818, 917
BstMBI GATC 3 cut(s) 535, 649, 709
BstMWI GCNNNNNNNGC 2 cut(s) 890, 1141
BstNI CCWGG 2 cut(s) 744, 881
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 742, 879
BstSFI CTRYAG 2 cut(s) 351, 541
BstSLI GKGCMC 2 cut(s) 913, 964
BstV1I GCAGC 3 cut(s) 41, 129, 775
BstV2I GAAGAC 1 cut(s) 1257
BstX2I RGATCY 2 cut(s) 649, 709
BstYI RGATCY 2 cut(s) 649, 709
BstZ17I GTATAC 1 cut(s) 513
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 2 cut(s) 48, 361
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 508
Cac8I GCNNGC 1 cut(s) 1137
Csp6I GTAC 3 cut(s) 280, 1156, 1280
CviAII CATG 4 cut(s) 32, 215, 362, 885
CviQI GTAC 3 cut(s) 280, 1156, 1280
DdeI CTNAG 6 cut(s) 95, 261, 327, 383, 551, 894
DpnI GATC 3 cut(s) 537, 651, 711
DpnII GATC 3 cut(s) 535, 649, 709
DraI TTTAAA 1 cut(s) 636
DriI GACNNNNNGTC 1 cut(s) 786
Eam1104I CTCTTC 1 cut(s) 1278
Eam1105I GACNNNNNGTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 1278
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 997
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 742, 879
EcoRV GATATC 1 cut(s) 997
EcoT14I CCWWGG 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 4 cut(s) 35, 218, 365, 888
FalI AAGNNNNNCTT 4 cut(s) 56, 88, 1344, 1376
FatI CATG 4 cut(s) 31, 214, 361, 884
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 3 cut(s) 55, 143, 764
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 3 cut(s) 55, 143, 764
FspBI CTAG 4 cut(s) 249, 530, 1073, 1405
GluI GCNGC 3 cut(s) 55, 143, 764
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 4 cut(s) 35, 218, 365, 888
HincII GTYRAC 3 cut(s) 295, 937, 1320
HindII GTYRAC 3 cut(s) 295, 937, 1320
HinfI GANTC 8 cut(s) 16, 296, 467, 721, 739, 865, 1183, 1300
HphI GGTGA 3 cut(s) 217, 313, 804
Hpy188I TCNGA 4 cut(s) 63, 384, 807, 994
Hpy188III TCNNGA 3 cut(s) 1196, 1288, 1348
HpyAV CCTTC 2 cut(s) 58, 1220
HpyCH4III ACNGT 1 cut(s) 831
HpyCH4IV ACGT 1 cut(s) 701
HpyCH4V TGCA 5 cut(s) 600, 911, 962, 1041, 1334
HpyF10VI GCNNNNNNNGC 2 cut(s) 890, 1141
HpyF3I CTNAG 6 cut(s) 95, 261, 327, 383, 551, 894
HpySE526I ACGT 1 cut(s) 701
Hsp92II CATG 4 cut(s) 35, 218, 365, 888
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 3 cut(s) 535, 649, 709
LmnI GCTCC 4 cut(s) 84, 616, 666, 1310
Lsp1109I GCAGC 3 cut(s) 41, 129, 775
LweI GCATC 2 cut(s) 366, 1321
MaeI CTAG 4 cut(s) 249, 530, 1073, 1405
MaeII ACGT 1 cut(s) 701
MaeIII GTNAC 4 cut(s) 223, 322, 875, 1180
MalI GATC 3 cut(s) 537, 651, 711
MboI GATC 3 cut(s) 535, 649, 709
MboII GAAGA 2 cut(s) 1257, 1265
MfeI CAATTG 1 cut(s) 581
MflI RGATCY 2 cut(s) 649, 709
MhlI GDGCHC 3 cut(s) 81, 913, 964
MluCI AATT 9 cut(s) 275, 390, 418, 581, 1048, 1222, 1248, 1375, 1382
MlyI GAGTC 4 cut(s) 290, 733, 874, 1177
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 5 cut(s) 61, 136, 639, 1250, 1350
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 7 cut(s) 204, 575, 603, 611, 635, 735, 855
MslI CAYNNNNRTG 3 cut(s) 213, 605, 1178
MspR9I CCNGG 2 cut(s) 744, 881
MunI CAATTG 1 cut(s) 581
MvaI CCWGG 2 cut(s) 744, 881
MwoI GCNNNNNNNGC 2 cut(s) 890, 1141
NcoI CCATGG 1 cut(s) 361
NdeII GATC 3 cut(s) 535, 649, 709
NlaIII CATG 4 cut(s) 35, 218, 365, 888
NlaIV GGNNCC 1 cut(s) 662
NmuCI GTSAC 2 cut(s) 223, 1180
NspI RCATGY 1 cut(s) 218
NspV TTCGAA 1 cut(s) 19
PceI AGGCCT 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 4 cut(s) 16, 467, 721, 1300
PflFI GACNNNGTC 1 cut(s) 941
PkrI GCNGC 3 cut(s) 56, 144, 765
PleI GAGTC 4 cut(s) 290, 733, 873, 1177
PpsI GAGTC 4 cut(s) 290, 733, 873, 1177
Ppu21I YACGTR 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 742, 879
PspGI CCWGG 2 cut(s) 742, 879
PspN4I GGNNCC 1 cut(s) 662
PsuI RGATCY 2 cut(s) 649, 709
PsyI GACNNNGTC 1 cut(s) 941
RsaI GTAC 3 cut(s) 281, 1157, 1281
RsaNI GTAC 3 cut(s) 280, 1156, 1280
RseI CAYNNNNRTG 3 cut(s) 213, 605, 1178
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 7 cut(s) 204, 575, 603, 611, 635, 735, 855
SatI GCNGC 3 cut(s) 55, 143, 764
Sau3AI GATC 3 cut(s) 535, 649, 709
SchI GAGTC 4 cut(s) 290, 733, 874, 1177
ScrFI CCNGG 2 cut(s) 744, 881
SduI GDGCHC 3 cut(s) 81, 913, 964
SfaNI GCATC 2 cut(s) 366, 1321
SfcI CTRYAG 2 cut(s) 351, 541
SfuI TTCGAA 1 cut(s) 19
SmiMI CAYNNNNRTG 3 cut(s) 213, 605, 1178
SmlI CTYRAG 1 cut(s) 1196
SmoI CTYRAG 1 cut(s) 1196
Sse9I AATT 9 cut(s) 275, 390, 418, 581, 1048, 1222, 1248, 1375, 1382
SseBI AGGCCT 1 cut(s) 71
SspI AATATT 2 cut(s) 1037, 1129
SspMI CTAG 4 cut(s) 249, 530, 1073, 1405
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 742, 879
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 831
TaiI ACGT 1 cut(s) 704
TaqI TCGA 1 cut(s) 19
TasI AATT 9 cut(s) 275, 390, 418, 581, 1048, 1222, 1248, 1375, 1382
TatI WGTACW 3 cut(s) 279, 1155, 1279
TfiI GAWTC 4 cut(s) 16, 467, 721, 1300
Tru1I TTAA 7 cut(s) 204, 575, 603, 611, 635, 735, 855
Tru9I TTAA 7 cut(s) 204, 575, 603, 611, 635, 735, 855
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 2 cut(s) 223, 1180
TseI GCWGC 3 cut(s) 54, 142, 763
Tsp45I GTSAC 2 cut(s) 223, 1180
TspDTI ATGAA 8 cut(s) 48, 288, 668, 993, 1082, 1119, 1139, 1257
TspGWI ACGGA 1 cut(s) 935
TspRI CASTG 1 cut(s) 508
Tth111I GACNNNGTC 1 cut(s) 941
VneI GTGCAC 2 cut(s) 909, 960
XapI RAATTY 2 cut(s) 418, 1382
XceI RCATGY 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 512
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 4 cut(s) 249, 530, 1073, 1405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.