Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000388.1

Orthogroup ID

OG0004459

Physical Location & Seq

Genomic Coordinates Reverse (-)

47050 .. 48513

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000388.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggctttgaacctgattcggattgcttcccatgaagctgaaaaccccgtgggctgctctctgaaggaggcctttgagcttcttgaaccaaaactaagacccccattggcaataacaatcccaacctcacaggaatacttgctgctcaacaaggctattttgtatggggttctatgcgaaacccattttgccaaaacacatattaagcatttacatgccattgtcatcgatgggtatggcttgtttgctagtttgattgctacggttgtgaatgaattgtacacgaaacttgttgacccagtgaaatgccagttgatttgggttactaaggagatgattgatgttcaggctgtaggcatccatggtttgttggtttgttttctgaggcaaattgttggtggggattttagtgatggaaatttgtggttgtgttttgagatcgtgagcatttttttgaccaaatgggattctctcttggaagtagaaccaatgattttgaccagtggattgtatacatatcttccgctactagctgatcactatagattgctaagtaatccaaagttggaagcgttaaagcaattggaaattgatttctgcattaaagtgttaagggagcagttttctgtctgtttaaagattgggagggatcttgttcggctcctacaagatgtggttcatataccaaactttagagctatgtggaaagatctggtattgaatcaaggcaagtttaagactcctgatttgcaacaggctcattttccgggtcactcggtgggaactcctacaccatcaccagaacagcagtctaaatgtagccaaatcagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ints3

Protein Analysis

277

Amino Acids

31.23

Weight (kDa)

6.36

Isoelectric Point (pI)

29.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14590
fragaria_vesca	FvH4_3g28960
malus_domestica	MD00G1154100.v1.1 MD11G1194100.v1.1 MD15G1397300.v1.1
prunus_persica	Prupe.1G578000_v2.0.a1
pyrus_communis	pycom11g16260 pycom15g35700
rosa_chinensis	RchiOBHm_Chr2g0127281 RchiOBHm_Chr6g0255981 RchiOBHm_Chr6g0267091
rosa_laevigata	RLG00000014039 RLG00000014796 RLG00000034863
rosa_multiflora	Rmu_sc0002938.1_g000050 Rmu_sc0004659.1_g000003 Rmu_ssc0000388.1_g000011
rosa_roxburghii	Rroxscaffold_2G00116300 Rroxscaffold_7G00201030
rosa_rugosa	Rorug02G0275800
rosa_samantha	Rh2BG336100 Rh2DG353800 Rh5CG385400 Rh6AG150700 Rh6BG074000 Rh6BG151500 Rh6CG147100 Rh6DG135600
rosa_wichuraiana	Rw0G004690 Rw2G026530 Rw5G032980 Rw6G013060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	512
AciI	CCGC	1 cut(s)	524
AclWI	GGATC	1 cut(s)	657
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	778
AfaI	GTAC	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	10, 86, 721
AluBI	AGCT	5 cut(s)	38, 79, 533, 698, 831
AluI	AGCT	5 cut(s)	38, 79, 533, 698, 831
AlwI	GGATC	1 cut(s)	657
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	54, 142
ApoI	RAATTY	1 cut(s)	418
ArsI	GACNNNNNNTTYG	2 cut(s)	730, 762
AsuC2I	CCSGG	1 cut(s)	768
AsuHPI	GGTGA	1 cut(s)	789
BbvI	GCAGC	2 cut(s)	41, 129
BccI	CCATC	3 cut(s)	224, 407, 802
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	768
BfaI	CTAG	2 cut(s)	249, 530
BfmI	CTRYAG	2 cut(s)	351, 541
BglII	AGATCT	1 cut(s)	709
BisI	GCNGC	2 cut(s)	55, 143
BlsI	GCNGC	2 cut(s)	56, 144
Bme1390I	CCNGG	1 cut(s)	768
BmiI	GGNNCC	1 cut(s)	662
BmrFI	CCNGG	1 cut(s)	768
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	768
Bsa29I	ATCGAT	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	48, 361
Bse1I	ACTGG	3 cut(s)	299, 310, 501
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	48, 361
BseGI	GGATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	3 cut(s)	299, 310, 501
BseXI	GCAGC	2 cut(s)	41, 129
BshFI	GGCC	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	767
BsnI	GGCC	1 cut(s)	71
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	438, 535, 649, 709
Bsp19I	CCATGG	1 cut(s)	361
BspACI	CCGC	1 cut(s)	524
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	375
BspDI	ATCGAT	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	662
BspPI	GGATC	1 cut(s)	657
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	3 cut(s)	299, 310, 501
BssECI	CCNNGG	2 cut(s)	48, 361
BssMI	GATC	4 cut(s)	438, 535, 649, 709
BssNAI	GTATAC	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	361
Bst1107I	GTATAC	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	265
BstAUI	TGTACA	1 cut(s)	279
BstDEI	CTNAG	4 cut(s)	95, 327, 383, 551
BstDSI	CCRYGG	2 cut(s)	48, 361
BstF5I	GGATG	1 cut(s)	357
BstKTI	GATC	4 cut(s)	441, 538, 652, 712
BstMBI	GATC	4 cut(s)	438, 535, 649, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	828
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	2 cut(s)	351, 541
BstV1I	GCAGC	2 cut(s)	41, 129
BstX2I	RGATCY	2 cut(s)	649, 709
BstYI	RGATCY	2 cut(s)	649, 709
BstZ17I	GTATAC	1 cut(s)	513
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	71
BsuTUI	ATCGAT	1 cut(s)	228
BtgI	CCRYGG	2 cut(s)	48, 361
BtsCI	GGATG	1 cut(s)	357
BtsIMutI	CAGTG	2 cut(s)	306, 508
ClaI	ATCGAT	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	32, 215, 362
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	4 cut(s)	95, 327, 383, 551
DpnI	GATC	4 cut(s)	440, 537, 651, 711
DpnII	GATC	4 cut(s)	438, 535, 649, 709
DraI	TTTAAA	1 cut(s)	636
DraIII	CACNNNGTG	1 cut(s)	778
Eco130I	CCWWGG	1 cut(s)	361
Eco147I	AGGCCT	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	3 cut(s)	35, 218, 365
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FatI	CATG	3 cut(s)	31, 214, 361
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	512
Fnu4HI	GCNGC	2 cut(s)	55, 143
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	55, 143
FspBI	CTAG	2 cut(s)	249, 530
GluI	GCNGC	2 cut(s)	55, 143
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	767
Hin1II	CATG	3 cut(s)	35, 218, 365
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	4 cut(s)	16, 467, 721, 739
HpaII	CCGG	1 cut(s)	767
HphI	GGTGA	1 cut(s)	789
Hpy166II	GTNNAC	3 cut(s)	282, 295, 513
Hpy188I	TCNGA	3 cut(s)	21, 63, 384
Hpy188III	TCNNGA	3 cut(s)	83, 442, 743
Hpy8I	GTNNAC	3 cut(s)	282, 295, 513
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	600, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	828
HpyF3I	CTNAG	4 cut(s)	95, 327, 383, 551
Hsp92II	CATG	3 cut(s)	35, 218, 365
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	438, 535, 649, 709
LmnI	GCTCC	2 cut(s)	616, 666
Lsp1109I	GCAGC	2 cut(s)	41, 129
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	2 cut(s)	249, 530
MaeIII	GTNAC	2 cut(s)	322, 770
MalI	GATC	4 cut(s)	440, 537, 651, 711
MboI	GATC	4 cut(s)	438, 535, 649, 709
MboII	GAAGA	1 cut(s)	512
MfeI	CAATTG	1 cut(s)	581
MflI	RGATCY	2 cut(s)	649, 709
MluCI	AATT	5 cut(s)	275, 390, 418, 581, 588
MlyI	GAGTC	1 cut(s)	733
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	4 cut(s)	61, 136, 378, 639
MseI	TTAA	6 cut(s)	204, 575, 603, 611, 635, 735
MslI	CAYNNNNRTG	2 cut(s)	213, 605
MspA1I	CMGCKG	1 cut(s)	831
MspI	CCGG	1 cut(s)	767
MspR9I	CCNGG	1 cut(s)	768
MunI	CAATTG	1 cut(s)	581
MwoI	GCNNNNNNNGC	1 cut(s)	828
NciI	CCSGG	1 cut(s)	768
NcoI	CCATGG	1 cut(s)	361
NdeII	GATC	4 cut(s)	438, 535, 649, 709
NlaIII	CATG	3 cut(s)	35, 218, 365
NlaIV	GGNNCC	1 cut(s)	662
NmuCI	GTSAC	1 cut(s)	770
NspI	RCATGY	1 cut(s)	218
PceI	AGGCCT	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	16, 467, 721
PkrI	GCNGC	2 cut(s)	56, 144
PleI	GAGTC	1 cut(s)	733
PpsI	GAGTC	1 cut(s)	733
PspN4I	GGNNCC	1 cut(s)	662
PsuI	RGATCY	2 cut(s)	649, 709
PvuII	CAGCTG	1 cut(s)	831
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	213, 605
SaqAI	TTAA	6 cut(s)	204, 575, 603, 611, 635, 735
SatI	GCNGC	2 cut(s)	55, 143
Sau3AI	GATC	4 cut(s)	438, 535, 649, 709
SchI	GAGTC	1 cut(s)	733
ScrFI	CCNGG	1 cut(s)	768
SetI	ASST	7 cut(s)	15, 40, 81, 128, 535, 700, 833
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	2 cut(s)	351, 541
SmiMI	CAYNNNNRTG	2 cut(s)	213, 605
Sse9I	AATT	5 cut(s)	275, 390, 418, 581, 588
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	1 cut(s)	524
SspMI	CTAG	2 cut(s)	249, 530
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	228
TasI	AATT	5 cut(s)	275, 390, 418, 581, 588
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	16, 467, 721
Tru1I	TTAA	6 cut(s)	204, 575, 603, 611, 635, 735
Tru9I	TTAA	6 cut(s)	204, 575, 603, 611, 635, 735
TscAI	CASTG	2 cut(s)	306, 508
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	2 cut(s)	54, 142
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	3 cut(s)	48, 288, 668
TspRI	CASTG	2 cut(s)	306, 508
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	512
XspI	CTAG	2 cut(s)	249, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.