RLG00000034863

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004459
Physical Location & Seq
Reverse (-)
56216598 .. 56217983
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034863

Sequence Viewer

Length: 1386 bp
ATGGCTTTGAAATTGCTCAAAATCGCTTCCCACAAAGCCGAAAACCCAACTGAGGTCTCTCTCAGCCAAGCCTTCGAGCTTCATGAACCAAAACTCAGACCCCCATTTGCAACAACGCCCCCAAACCCACAAGAATACTTTCTGCTCATTAAGGCTATACTCTACGGGGTTTTGTGCGAAACCCATTTGGCCAAAACACATATTAAGCACTTACATGCCATTGTCACTGATGGGTATGCCTTGTTTGTCAGTTCAATTGTTCAGGTTGTGAATGAACTCTATGTGAACCTTGTTGAACCGGTCAAGTGCCAATTGATTAGAGTTACCATTGAGATGATTGATGTTCAGGCCGTTGGAGTTCATGGTTTGTTGGTTTGTTTATTGAGGCAGATTGTTGGTGGGGACTTCAGTGATGGAAATTTGTGGTTGTGTTTTGAGATGGTGAGCATTTTTTTGTCCAAATGGGATTCTCTGTTAGAAGTAGAACCCATGATTTTGACTAGTGGGTTGTATACGTTTCTGCGGTTATTAGCTGATCACTCTAGACTGTTAAGTAATCCAAAATTGGAGGCATTGAAGCATTTAGAGATTGAGTTTTGTATTAGGCTTTTAAGGGAGCAATTTTCTTTGTGCTTGAAGATTGGGAGAGATCTTGTTCGGCTCTTACAAGATTTGGTTCATTTACCCGAGTTTAGAGCTATATGGAAGGGTTTAGTCTTGAATCAGGGAGAGTTTAAGACTCCCACTTTCTTTGATATTTCACAGCTCTACTACTCGGTGACTTTAAGTCAGTATACTTTGCTTCGGATTACTCCAGAAATGGAGACCCAATTGCGGTTTTTACTCAGTTATGTCAAGTTGGGGAACCAGAAGCGTTACCAGGCATGGTTTGCTAGGAAGTTCCTAAGTGAACCAAATAGAGAGACTTTGATCATTGACATTGTTCGTTTTATTTGTTGTGCACACCACCCACCAAATGAAATCATTCAATCTGATGTCATTCCAAGATGGGCCGTTATTGGTTGGCTGTTAAAATTGTGCACGAGGAATTCTGTTGCAGCCAGTGTGAAACTGGCTCTTCTTTACGATTGGCTTTTCTTTGACGAAAGCGTAGACAATGTTATGAATATTGAGCCTGCAATGTTATTGATGGTATATTCTGTTCCAAGATACATTAATGTGACTCACACACTCCTTGAATTTTTGTTCCTTCTTGTGGACAACTATGATGTGAATCATCATGATATCATGGTTAAAGGCGTATTGTCATCATTTAGTGTACTTGTGAAGAAAGGAGTGATTCGCTCACTTGATGTCTTGATCTGTTGTGATTCACTTTCTCCCATCTTGAGAGAAAGACTTGGTAGGTTTTTGCCAGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

462

Amino Acids

52.93

Weight (kDa)

7.22

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 46 - 454 5.7e-149 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 512, 794, 1113
AciI CCGC 2 cut(s) 523, 835
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 3 cut(s) 418, 1048, 1199
AcuI CTGAAG 1 cut(s) 391
AfaI GTAC 1 cut(s) 1281
AfiI CCNNNNNNNGG 3 cut(s) 52, 834, 1216
AgeI ACCGGT 1 cut(s) 298
AgsI TTSAA 8 cut(s) 10, 255, 296, 577, 637, 721, 989, 1199
AhdI GACNNNNNGTC 1 cut(s) 786
AhlI ACTAGT 1 cut(s) 500
AjnI CCWGG 2 cut(s) 879, 1375
AluBI AGCT 4 cut(s) 79, 533, 698, 766
AluI AGCT 4 cut(s) 79, 533, 698, 766
Alw21I GWGCWC 2 cut(s) 964, 1043
Alw26I GTCTC 3 cut(s) 61, 818, 917
Alw44I GTGCAC 2 cut(s) 960, 1039
Ama87I CYCGRG 1 cut(s) 686
AoxI GGCC 3 cut(s) 189, 348, 1011
ApaLI GTGCAC 2 cut(s) 960, 1039
ApeKI GCWGC 1 cut(s) 1058
ApoI RAATTY 3 cut(s) 418, 1048, 1199
AseI ATTAAT 1 cut(s) 1176
AsiGI ACCGGT 1 cut(s) 298
Asp700I GAANNNNTTC 2 cut(s) 138, 984
AspS9I GGNCC 1 cut(s) 1011
AsuHPI GGTGA 2 cut(s) 454, 790
AvaI CYCGRG 1 cut(s) 686
BaeGI GKGCMC 2 cut(s) 964, 1043
BalI TGGCCA 1 cut(s) 191
BauI CACGAG 1 cut(s) 1042
Bbv12I GWGCWC 2 cut(s) 964, 1043
BbvI GCAGC 1 cut(s) 1070
BccI CCATC 6 cut(s) 224, 407, 433, 1002, 1144, 1352
BceAI ACGGC 2 cut(s) 335, 998
BciT130I CCWGG 2 cut(s) 881, 1377
BclI TGATCA 2 cut(s) 535, 930
BcoDI GTCTC 3 cut(s) 61, 818, 917
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 3 cut(s) 501, 543, 894
BglII AGATCT 1 cut(s) 649
BisI GCNGC 1 cut(s) 1059
BlsI GCNGC 1 cut(s) 1060
Bme1390I CCNGG 2 cut(s) 881, 1377
BmeRI GACNNNNNGTC 1 cut(s) 786
BmeT110I CYCGRG 1 cut(s) 686
BmgT120I GGNCC 1 cut(s) 1011
BmiI GGNNCC 1 cut(s) 866
BmrFI CCNGG 2 cut(s) 881, 1377
BpmI CTGGAG 1 cut(s) 798
BpuEI CTTGAG 1 cut(s) 1369
BsaBI GATNNNNATC 1 cut(s) 1233
BsaI GGTCTC 2 cut(s) 61, 818
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 834, 1216
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 1062, 1077
Bse3DI GCAATG 1 cut(s) 1146
Bse8I GATNNNNATC 1 cut(s) 1233
BseBI CCWGG 2 cut(s) 881, 1377
BseJI GATNNNNATC 1 cut(s) 1233
BseLI CCNNNNNNNGG 3 cut(s) 52, 834, 1216
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 4 cut(s) 42, 76, 109, 859
BseNI ACTGG 2 cut(s) 1062, 1077
BseSI GKGCMC 2 cut(s) 964, 1043
BseXI GCAGC 1 cut(s) 1070
BshFI GGCC 3 cut(s) 191, 350, 1013
BshTI ACCGGT 1 cut(s) 298
BsiHKAI GWGCWC 2 cut(s) 964, 1043
BsiHKCI CYCGRG 1 cut(s) 686
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 3 cut(s) 52, 834, 1216
BsmAI GTCTC 3 cut(s) 61, 818, 917
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 3 cut(s) 191, 350, 1013
Bso31I GGTCTC 2 cut(s) 61, 818
BsoBI CYCGRG 1 cut(s) 686
Bsp1286I GDGCHC 2 cut(s) 964, 1043
Bsp143I GATC 4 cut(s) 535, 649, 930, 1320
BspACI CCGC 2 cut(s) 523, 835
BspANI GGCC 3 cut(s) 191, 350, 1013
BspCNI CTCAG 4 cut(s) 43, 75, 108, 858
BspHI TCATGA 2 cut(s) 82, 1240
BspLI GGNNCC 1 cut(s) 866
BspQI GCTCTTC 1 cut(s) 1083
BspTNI GGTCTC 2 cut(s) 61, 818
BsrDI GCAATG 1 cut(s) 1146
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 2 cut(s) 1062, 1077
BssAI RCCGGY 1 cut(s) 298
BssMI GATC 4 cut(s) 535, 649, 930, 1320
BssNAI GTATAC 2 cut(s) 513, 795
BssSI CACGAG 1 cut(s) 1042
Bst1107I GTATAC 2 cut(s) 513, 795
Bst2BI CACGAG 1 cut(s) 1042
Bst2UI CCWGG 2 cut(s) 881, 1377
Bst4CI ACNGT 1 cut(s) 549
Bst6I CTCTTC 1 cut(s) 1083
BstAPI GCANNNNNTGC 1 cut(s) 890
BstC8I GCNNGC 1 cut(s) 1137
BstDEI CTNAG 5 cut(s) 51, 62, 95, 845, 905
BstKTI GATC 4 cut(s) 538, 652, 933, 1323
BstMAI GTCTC 3 cut(s) 61, 818, 917
BstMBI GATC 4 cut(s) 535, 649, 930, 1320
BstMWI GCNNNNNNNGC 1 cut(s) 890
BstNI CCWGG 2 cut(s) 881, 1377
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 879, 1375
BstSLI GKGCMC 2 cut(s) 964, 1043
BstV1I GCAGC 1 cut(s) 1070
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BstZ17I GTATAC 2 cut(s) 513, 795
BsuRI GGCC 3 cut(s) 191, 350, 1013
BtsIMutI CAGTG 3 cut(s) 225, 415, 1069
Cac8I GCNNGC 1 cut(s) 1137
CciI TCATGA 2 cut(s) 82, 1240
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 1011
Csp6I GTAC 1 cut(s) 1280
CspAI ACCGGT 1 cut(s) 298
CspCI CAANNNNNGTGG 2 cut(s) 733, 768
CviAII CATG 7 cut(s) 83, 215, 362, 490, 885, 1241, 1249
CviQI GTAC 1 cut(s) 1280
DdeI CTNAG 5 cut(s) 51, 62, 95, 845, 905
DpnI GATC 4 cut(s) 537, 651, 932, 1322
DpnII GATC 4 cut(s) 535, 649, 930, 1320
DriI GACNNNNNGTC 1 cut(s) 786
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 1083
Eam1105I GACNNNNNGTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 1083
Eco31I GGTCTC 2 cut(s) 61, 818
Eco32I GATATC 1 cut(s) 1246
Eco57I CTGAAG 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 1048
EcoRII CCWGG 2 cut(s) 879, 1375
EcoRV GATATC 1 cut(s) 1246
FaeI CATG 7 cut(s) 86, 218, 365, 493, 888, 1244, 1252
FaqI GGGAC 1 cut(s) 416
FatI CATG 7 cut(s) 82, 214, 361, 489, 884, 1240, 1248
FbaI TGATCA 2 cut(s) 535, 930
FblI GTMKAC 3 cut(s) 512, 794, 1113
Fnu4HI GCNGC 1 cut(s) 1059
Fsp4HI GCNGC 1 cut(s) 1059
FspBI CTAG 3 cut(s) 501, 543, 894
GluI GCNGC 1 cut(s) 1059
GsuI CTGGAG 1 cut(s) 798
HaeIII GGCC 3 cut(s) 191, 350, 1013
HapII CCGG 1 cut(s) 299
Hin1II CATG 7 cut(s) 86, 218, 365, 493, 888, 1244, 1252
HinfI GANTC 7 cut(s) 467, 721, 739, 1183, 1234, 1300, 1331
HpaII CCGG 1 cut(s) 299
HphI GGTGA 2 cut(s) 454, 790
Hpy166II GTNNAC 9 cut(s) 286, 513, 795, 911, 962, 1041, 1114, 1219, 1280
Hpy188I TCNGA 3 cut(s) 98, 807, 994
Hpy188III TCNNGA 7 cut(s) 83, 543, 718, 815, 1241, 1318, 1348
Hpy8I GTNNAC 9 cut(s) 286, 513, 795, 911, 962, 1041, 1114, 1219, 1280
HpyAV CCTTC 3 cut(s) 82, 700, 1220
HpyCH4III ACNGT 1 cut(s) 549
HpyCH4IV ACGT 1 cut(s) 515
HpyCH4V TGCA 5 cut(s) 110, 962, 1041, 1058, 1139
HpyF10VI GCNNNNNNNGC 1 cut(s) 890
HpyF3I CTNAG 5 cut(s) 51, 62, 95, 845, 905
HpySE526I ACGT 1 cut(s) 515
Hsp92II CATG 7 cut(s) 86, 218, 365, 493, 888, 1244, 1252
Ksp22I TGATCA 2 cut(s) 535, 930
Kzo9I GATC 4 cut(s) 535, 649, 930, 1320
LguI GCTCTTC 1 cut(s) 1083
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 1 cut(s) 1070
MaeI CTAG 3 cut(s) 501, 543, 894
MaeII ACGT 1 cut(s) 515
MaeIII GTNAC 5 cut(s) 223, 322, 778, 875, 1180
MalI GATC 4 cut(s) 537, 651, 932, 1322
MboI GATC 4 cut(s) 535, 649, 930, 1320
MboII GAAGA 3 cut(s) 649, 1070, 1300
MfeI CAATTG 3 cut(s) 255, 311, 830
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 2 cut(s) 964, 1043
MlsI TGGCCA 1 cut(s) 191
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 2 cut(s) 733, 1177
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 4 cut(s) 46, 378, 562, 1038
Mox20I TGGCCA 1 cut(s) 191
MroXI GAANNNNTTC 2 cut(s) 138, 984
MscI TGGCCA 1 cut(s) 191
MseI TTAA 9 cut(s) 150, 204, 551, 611, 735, 785, 1031, 1176, 1254
MslI CAYNNNNRTG 3 cut(s) 213, 332, 1178
Msp20I TGGCCA 1 cut(s) 191
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 2 cut(s) 881, 1377
MunI CAATTG 3 cut(s) 255, 311, 830
MvaI CCWGG 2 cut(s) 881, 1377
MwoI GCNNNNNNNGC 1 cut(s) 890
NdeII GATC 4 cut(s) 535, 649, 930, 1320
NlaIII CATG 7 cut(s) 86, 218, 365, 493, 888, 1244, 1252
NlaIV GGNNCC 1 cut(s) 866
NmuCI GTSAC 3 cut(s) 223, 778, 1180
NspI RCATGY 1 cut(s) 218
PagI TCATGA 2 cut(s) 82, 1240
PciSI GCTCTTC 1 cut(s) 1083
PdmI GAANNNNTTC 2 cut(s) 138, 984
PfeI GAWTC 5 cut(s) 467, 721, 1234, 1300, 1331
PinAI ACCGGT 1 cut(s) 298
PkrI GCNGC 1 cut(s) 1060
PleI GAGTC 2 cut(s) 733, 1177
PpsI GAGTC 2 cut(s) 733, 1177
PshBI ATTAAT 1 cut(s) 1176
Psp6I CCWGG 2 cut(s) 879, 1375
PspGI CCWGG 2 cut(s) 879, 1375
PspN4I GGNNCC 1 cut(s) 866
PspPI GGNCC 1 cut(s) 1011
PsrI GAACNNNNNNTAC 2 cut(s) 1146, 1178
PsuI RGATCY 1 cut(s) 649
RsaI GTAC 1 cut(s) 1281
RsaNI GTAC 1 cut(s) 1280
RseI CAYNNNNRTG 3 cut(s) 213, 332, 1178
SapI GCTCTTC 1 cut(s) 1083
SaqAI TTAA 9 cut(s) 150, 204, 551, 611, 735, 785, 1031, 1176, 1254
SatI GCNGC 1 cut(s) 1059
Sau3AI GATC 4 cut(s) 535, 649, 930, 1320
Sau96I GGNCC 1 cut(s) 1011
SchI GAGTC 2 cut(s) 733, 1177
ScrFI CCNGG 2 cut(s) 881, 1377
SduI GDGCHC 2 cut(s) 964, 1043
SmiMI CAYNNNNRTG 3 cut(s) 213, 332, 1178
SmlI CTYRAG 1 cut(s) 1348
SmoI CTYRAG 1 cut(s) 1348
SpeI ACTAGT 1 cut(s) 500
SsiI CCGC 2 cut(s) 523, 835
SspI AATATT 1 cut(s) 1129
SspMI CTAG 3 cut(s) 501, 543, 894
StyD4I CCNGG 2 cut(s) 879, 1375
TaaI ACNGT 1 cut(s) 549
TaiI ACGT 1 cut(s) 518
TaqI TCGA 1 cut(s) 75
TatI WGTACW 1 cut(s) 1279
TfiI GAWTC 5 cut(s) 467, 721, 1234, 1300, 1331
Tru1I TTAA 9 cut(s) 150, 204, 551, 611, 735, 785, 1031, 1176, 1254
Tru9I TTAA 9 cut(s) 150, 204, 551, 611, 735, 785, 1031, 1176, 1254
TscAI CASTG 3 cut(s) 232, 415, 1069
TseFI GTSAC 3 cut(s) 223, 778, 1180
TseI GCWGC 1 cut(s) 1058
Tsp45I GTSAC 3 cut(s) 223, 778, 1180
TspDTI ATGAA 7 cut(s) 71, 99, 288, 350, 668, 993, 1139
TspRI CASTG 3 cut(s) 232, 415, 1069
VneI GTGCAC 2 cut(s) 960, 1039
VspI ATTAAT 1 cut(s) 1176
XapI RAATTY 3 cut(s) 418, 1048, 1199
XbaI TCTAGA 1 cut(s) 542
XceI RCATGY 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 1069
XmiI GTMKAC 3 cut(s) 512, 794, 1113
XmnI GAANNNNTTC 2 cut(s) 138, 984
XspI CTAG 3 cut(s) 501, 543, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.