Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004459

Physical Location & Seq

Genomic Coordinates Reverse (-)

55952271 .. 55953492

Gene Structure 1222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCTTTGAAATTGGTCAAAATCGCTTCCCACAAAGCTGAAAACCCAACTGAGGTCTCTCTCAGGCAAGCCTTCGAGCTTCTTGAACCAAAACTCAGACTCCCATTTGCATTAACACCCCCAAACCCACAAGAATACTTTCTGCTCATTAAGGCTATACTCTACGGGATTTTATGTGAAACCCATTTGGCCAAAGCACATATTAAACACTTACATGCCCTTGTCACTGATGGGTATGCCTTGTTTGTTATTCATGGTTTGTTGGTTTGTTTATTGAGGCAGATTGTTGGTGGGGACTTCAATGATGGAAATTTGTGGTTGTGTTTTGAGATGGTGAGCCTTTTTTTGTCCAAATGGGATTCTCTCTTAGAAATAGAACCAATGATTTTGACTAATGGGTTGTATACGTTTCTGCGGTTATTGGCTAATCACTCTAGACTGTTAAGTAATCCAAAATTGGAGGCATTGAAGCATATAGAGATTGAGTTTTTGACTTTAAGTCAGTATACTTTGCTTTCGATTACTCCAGAAATGGAGACCCAATTGCAGTTTGTACTGAGTTATGTCAAGTTGGGGAACCAGAAGCGTTACCAGGCATGGTTTGCTAGGAAGTTCCTAAGTGAATCAAATACAGAGACTTTGATCATTGACATTGTTTGTTTTATTTGTTGTGCACACCACCCACCAAATGAAATCATTCAATCTGATGTCATTCCAAGATGGGCCGTTATTGGTTGGCTGCTAAAATTGTGCACGAGGAATTCTGTTGCAGCCAGTGTGAAATTGGCTCTTCTTTACTATTGGCTTTTCTTTCACGAAAGCATAGACAATGTTATGAATATTGAGCCTGCAATGTTATTGATGGTATATTTTGTTCCAAGATACATTTATGTGAGTCACACACACCTTGAATTTTTGTTCCTTCTTGTGGACAACTATGATGTGAGTCATCATGATATCATGGTTAAAGGCGTATTGTCATCATTTAGTGTACTAGTGAAGAAACGAGTGATTCACTTGTTAGTAAAAAAAATTAGAAAATTGCTATATTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ints3

Protein Analysis

352

Amino Acids

40.71

Weight (kDa)

8.06

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ints3_N	PF10189	86 - 164	6.5e-13	Integrator complex subunit 3 N-terminal
Ints3_N	PF10189	165 - 342	1.9e-68	Integrator complex subunit 3 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14590
fragaria_vesca	FvH4_3g28960
malus_domestica	MD00G1154100.v1.1 MD11G1194100.v1.1 MD15G1397300.v1.1
prunus_persica	Prupe.1G578000_v2.0.a1
pyrus_communis	pycom11g16260 pycom15g35700
rosa_chinensis	RchiOBHm_Chr2g0127281 RchiOBHm_Chr6g0255981 RchiOBHm_Chr6g0267091
rosa_laevigata	RLG00000014039 RLG00000014796 RLG00000034863
rosa_multiflora	Rmu_sc0002938.1_g000050 Rmu_sc0004659.1_g000003 Rmu_ssc0000388.1_g000011
rosa_roxburghii	Rroxscaffold_2G00116300 Rroxscaffold_7G00201030
rosa_rugosa	Rorug02G0275800
rosa_samantha	Rh2BG336100 Rh2DG353800 Rh5CG385400 Rh6AG150700 Rh6BG074000 Rh6BG151500 Rh6CG147100 Rh6DG135600
rosa_wichuraiana	Rw0G004690 Rw2G026530 Rw5G032980 Rw6G013060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	404, 506
AciI	CCGC	1 cut(s)	415
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	3 cut(s)	310, 760, 911
AfaI	GTAC	2 cut(s)	555, 993
AfiI	CCNNNNNNNGG	2 cut(s)	52, 928
AgsI	TTSAA	6 cut(s)	10, 86, 301, 469, 701, 911
AhdI	GACNNNNNGTC	1 cut(s)	498
AhlI	ACTAGT	1 cut(s)	994
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	2 cut(s)	38, 79
AluI	AGCT	2 cut(s)	38, 79
Alw21I	GWGCWC	2 cut(s)	676, 755
Alw26I	GTCTC	3 cut(s)	61, 530, 629
Alw44I	GTGCAC	2 cut(s)	672, 751
AoxI	GGCC	2 cut(s)	189, 723
ApaLI	GTGCAC	2 cut(s)	672, 751
ApeKI	GCWGC	2 cut(s)	739, 770
ApoI	RAATTY	3 cut(s)	310, 760, 911
Asp700I	GAANNNNTTC	2 cut(s)	138, 696
AspS9I	GGNCC	1 cut(s)	723
AsuHPI	GGTGA	1 cut(s)	346
BaeGI	GKGCMC	2 cut(s)	676, 755
BalI	TGGCCA	1 cut(s)	191
BauI	CACGAG	1 cut(s)	754
Bbv12I	GWGCWC	2 cut(s)	676, 755
BbvI	GCAGC	2 cut(s)	726, 782
BccI	CCATC	5 cut(s)	224, 299, 325, 714, 856
BceAI	ACGGC	1 cut(s)	710
BciT130I	CCWGG	1 cut(s)	593
BclI	TGATCA	1 cut(s)	642
BcoDI	GTCTC	3 cut(s)	61, 530, 629
BcuI	ACTAGT	1 cut(s)	994
BfaI	CTAG	3 cut(s)	435, 606, 995
BisI	GCNGC	2 cut(s)	740, 771
BlsI	GCNGC	2 cut(s)	741, 772
Bme1390I	CCNGG	1 cut(s)	593
BmeRI	GACNNNNNGTC	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	723
BmiI	GGNNCC	1 cut(s)	578
BmrFI	CCNGG	1 cut(s)	593
BpmI	CTGGAG	1 cut(s)	510
BsaI	GGTCTC	2 cut(s)	61, 530
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 928
Bse1I	ACTGG	1 cut(s)	774
Bse3DI	GCAATG	1 cut(s)	858
BseBI	CCWGG	1 cut(s)	593
BseLI	CCNNNNNNNGG	2 cut(s)	52, 928
BseMI	GCAATG	1 cut(s)	858
BseMII	CTCAG	4 cut(s)	42, 76, 109, 548
BseNI	ACTGG	1 cut(s)	774
BseSI	GKGCMC	2 cut(s)	676, 755
BseXI	GCAGC	2 cut(s)	726, 782
BshFI	GGCC	2 cut(s)	191, 725
BsiHKAI	GWGCWC	2 cut(s)	676, 755
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	52, 928
BsmAI	GTCTC	3 cut(s)	61, 530, 629
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	191, 725
Bso31I	GGTCTC	2 cut(s)	61, 530
Bsp1286I	GDGCHC	2 cut(s)	676, 755
Bsp143I	GATC	1 cut(s)	642
BspACI	CCGC	1 cut(s)	415
BspANI	GGCC	2 cut(s)	191, 725
BspCNI	CTCAG	4 cut(s)	43, 75, 108, 549
BspHI	TCATGA	1 cut(s)	952
BspLI	GGNNCC	1 cut(s)	578
BspQI	GCTCTTC	1 cut(s)	795
BspTNI	GGTCTC	2 cut(s)	61, 530
BsrDI	GCAATG	1 cut(s)	858
BsrI	ACTGG	1 cut(s)	774
BssMI	GATC	1 cut(s)	642
BssNAI	GTATAC	2 cut(s)	405, 507
BssSI	CACGAG	1 cut(s)	754
Bst1107I	GTATAC	2 cut(s)	405, 507
Bst2BI	CACGAG	1 cut(s)	754
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	1 cut(s)	441
Bst6I	CTCTTC	1 cut(s)	795
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstC8I	GCNNGC	2 cut(s)	69, 849
BstDEI	CTNAG	6 cut(s)	51, 62, 95, 367, 557, 617
BstKTI	GATC	1 cut(s)	645
BstMAI	GTCTC	3 cut(s)	61, 530, 629
BstMBI	GATC	1 cut(s)	642
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	591
BstSLI	GKGCMC	2 cut(s)	676, 755
BstV1I	GCAGC	2 cut(s)	726, 782
BstZ17I	GTATAC	2 cut(s)	405, 507
BsuRI	GGCC	2 cut(s)	191, 725
BtsIMutI	CAGTG	2 cut(s)	225, 781
Cac8I	GCNNGC	2 cut(s)	69, 849
CciI	TCATGA	1 cut(s)	952
Cfr13I	GGNCC	1 cut(s)	723
Csp6I	GTAC	2 cut(s)	554, 992
CviAII	CATG	5 cut(s)	215, 254, 597, 953, 961
CviQI	GTAC	2 cut(s)	554, 992
DdeI	CTNAG	6 cut(s)	51, 62, 95, 367, 557, 617
DpnI	GATC	1 cut(s)	644
DpnII	GATC	1 cut(s)	642
DriI	GACNNNNNGTC	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	795
Eam1105I	GACNNNNNGTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	795
Eco31I	GGTCTC	2 cut(s)	61, 530
Eco32I	GATATC	1 cut(s)	958
EcoRI	GAATTC	1 cut(s)	760
EcoRII	CCWGG	1 cut(s)	591
EcoRV	GATATC	1 cut(s)	958
FaeI	CATG	5 cut(s)	218, 257, 600, 956, 964
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	5 cut(s)	214, 253, 596, 952, 960
FbaI	TGATCA	1 cut(s)	642
FblI	GTMKAC	2 cut(s)	404, 506
Fnu4HI	GCNGC	2 cut(s)	740, 771
Fsp4HI	GCNGC	2 cut(s)	740, 771
FspBI	CTAG	3 cut(s)	435, 606, 995
GluI	GCNGC	2 cut(s)	740, 771
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	2 cut(s)	191, 725
Hin1II	CATG	5 cut(s)	218, 257, 600, 956, 964
HinfI	GANTC	6 cut(s)	99, 359, 623, 895, 946, 1012
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	6 cut(s)	405, 507, 674, 753, 931, 992
Hpy188I	TCNGA	2 cut(s)	98, 706
Hpy188III	TCNNGA	5 cut(s)	83, 435, 527, 815, 953
Hpy8I	GTNNAC	6 cut(s)	405, 507, 674, 753, 931, 992
HpyAV	CCTTC	2 cut(s)	82, 932
HpyCH4III	ACNGT	1 cut(s)	441
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	6 cut(s)	110, 547, 674, 753, 770, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	6 cut(s)	51, 62, 95, 367, 557, 617
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	5 cut(s)	218, 257, 600, 956, 964
Ksp22I	TGATCA	1 cut(s)	642
Kzo9I	GATC	1 cut(s)	642
LguI	GCTCTTC	1 cut(s)	795
LpnPI	CCDG	7 cut(s)	49, 540, 578, 593, 605, 787, 861
Lsp1109I	GCAGC	2 cut(s)	726, 782
MaeI	CTAG	3 cut(s)	435, 606, 995
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	3 cut(s)	223, 587, 896
MalI	GATC	1 cut(s)	644
MboI	GATC	1 cut(s)	642
MboII	GAAGA	2 cut(s)	782, 1012
MfeI	CAATTG	1 cut(s)	542
MhlI	GDGCHC	2 cut(s)	676, 755
MlsI	TGGCCA	1 cut(s)	191
MluNI	TGGCCA	1 cut(s)	191
MlyI	GAGTC	3 cut(s)	93, 904, 955
MnlI	CCTC	4 cut(s)	46, 270, 454, 750
Mox20I	TGGCCA	1 cut(s)	191
MroXI	GAANNNNTTC	2 cut(s)	138, 696
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	6 cut(s)	113, 150, 204, 443, 497, 966
MslI	CAYNNNNRTG	2 cut(s)	213, 890
Msp20I	TGGCCA	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	593
MunI	CAATTG	1 cut(s)	542
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	1 cut(s)	602
NdeII	GATC	1 cut(s)	642
NlaIII	CATG	5 cut(s)	218, 257, 600, 956, 964
NlaIV	GGNNCC	1 cut(s)	578
NmuCI	GTSAC	2 cut(s)	223, 896
NspI	RCATGY	1 cut(s)	218
PagI	TCATGA	1 cut(s)	952
PciSI	GCTCTTC	1 cut(s)	795
PdmI	GAANNNNTTC	2 cut(s)	138, 696
PfeI	GAWTC	3 cut(s)	359, 623, 1012
PkrI	GCNGC	2 cut(s)	741, 772
PleI	GAGTC	3 cut(s)	93, 903, 954
PpsI	GAGTC	3 cut(s)	93, 903, 954
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	1 cut(s)	578
PspPI	GGNCC	1 cut(s)	723
PsrI	GAACNNNNNNTAC	2 cut(s)	858, 890
RsaI	GTAC	2 cut(s)	555, 993
RsaNI	GTAC	2 cut(s)	554, 992
RseI	CAYNNNNRTG	2 cut(s)	213, 890
SapI	GCTCTTC	1 cut(s)	795
SaqAI	TTAA	6 cut(s)	113, 150, 204, 443, 497, 966
SatI	GCNGC	2 cut(s)	740, 771
Sau3AI	GATC	1 cut(s)	642
Sau96I	GGNCC	1 cut(s)	723
SchI	GAGTC	3 cut(s)	93, 904, 955
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	2 cut(s)	676, 755
SetI	ASST	5 cut(s)	40, 57, 81, 410, 909
SmiMI	CAYNNNNRTG	2 cut(s)	213, 890
SpeI	ACTAGT	1 cut(s)	994
SsiI	CCGC	1 cut(s)	415
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	3 cut(s)	435, 606, 995
StyD4I	CCNGG	1 cut(s)	591
TaaI	ACNGT	1 cut(s)	441
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	2 cut(s)	75, 518
TatI	WGTACW	2 cut(s)	553, 991
TfiI	GAWTC	3 cut(s)	359, 623, 1012
Tru1I	TTAA	6 cut(s)	113, 150, 204, 443, 497, 966
Tru9I	TTAA	6 cut(s)	113, 150, 204, 443, 497, 966
TscAI	CASTG	2 cut(s)	232, 781
TseFI	GTSAC	2 cut(s)	223, 896
TseI	GCWGC	2 cut(s)	739, 770
Tsp45I	GTSAC	2 cut(s)	223, 896
TspDTI	ATGAA	3 cut(s)	242, 705, 851
TspRI	CASTG	2 cut(s)	232, 781
VneI	GTGCAC	2 cut(s)	672, 751
XapI	RAATTY	3 cut(s)	310, 760, 911
XbaI	TCTAGA	1 cut(s)	434
XceI	RCATGY	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	781
XmiI	GTMKAC	2 cut(s)	404, 506
XmnI	GAANNNNTTC	2 cut(s)	138, 696
XspI	CTAG	3 cut(s)	435, 606, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.