Rh5CG385400

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004459
Physical Location & Seq
Reverse (-)
50715704 .. 50724317
8614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG385400.1

Sequence Viewer

Length: 897 bp
ATGATTTTGACTAGTGGGTTGTATACGTTTCTGCGGTTATTAGCTGATCACTCTAGATTGTTAAGTAATTCAAAAGTGGAGGCATTGAAGCATTTAGAGATTGAGTTTTGTATTAGACTTTTAAGGGAGCAGTTTTCTTTGTGTTTGAAGATTGGGAGAGATCTTGTTCGGCTCTTACAAGATTTGGTTCATGTACCCGAGTTTAGAGCTATATGGAAAGGTTTAGTCTTGAATCAGGGCGAGTTTAAGACTCCCACTTTCTTTGATATTTCACAGCTCTATTACACAGTGACTTCAAGTCAGTATACTTTGCTTCGGATTACTCCAGAAATGGAGACCCAATTGCGGTTTTTACTCAGTTATGTCAAGTTGGGGAACCAGAAGCGTTACCAGGCATGGTTTGCTAGGAAGTTCCTAAGTGAACCAAATAGAGAGACTTTGATCATTGACATTGTTCGTTTTATTTGTTGTGCACACCACCCACCAAATGAAATCATTCAATCTGATGTCATTCCAAGATGGGCCGTTATTGGTTGGCTGTTAAAATTGTGCACGAGGAATTCTGTTGCAGCCAGTGTGAAACTGGCTCTTCTTTACGATTGGCTTTTCTTCGACGAAAGCATAGACAATGTTATGAATATTGAGCCTGCAATGTTATTGATGGCATCTTCTGTTCCAGGATACATTTATGTGACTCACACACTCCTTGAATTTTTGTTCCTTCTTGTGGACAACTATGATGTGAATCATCATGATATCATGGTTAAAGGCGTATTGTCATCATTTAGTGTACTTGTGAAGAAAGGAGTGATTCGCTCACTTGATGTCTTGATCTGTTGTGATTCACTTTCTCCCATCTTGAGAGAAAGACTTGGTAGGTTTTTGCCAGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

298

Amino Acids

34.5

Weight (kDa)

8.62

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 2 - 291 9.1e-117 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 23, 305
AciI CCGC 2 cut(s) 34, 346
AcsI RAATTY 2 cut(s) 559, 710
AfaI GTAC 2 cut(s) 195, 792
AfiI CCNNNNNNNGG 2 cut(s) 345, 727
AgsI TTSAA 7 cut(s) 72, 88, 148, 232, 297, 500, 710
AhdI GACNNNNNGTC 1 cut(s) 297
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 3 cut(s) 390, 676, 886
AluBI AGCT 3 cut(s) 44, 209, 277
AluI AGCT 3 cut(s) 44, 209, 277
Alw21I GWGCWC 2 cut(s) 475, 554
Alw26I GTCTC 2 cut(s) 329, 428
Alw44I GTGCAC 2 cut(s) 471, 550
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 1 cut(s) 522
ApaLI GTGCAC 2 cut(s) 471, 550
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 2 cut(s) 559, 710
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 522
AvaI CYCGRG 1 cut(s) 197
BaeGI GKGCMC 2 cut(s) 475, 554
BauI CACGAG 1 cut(s) 553
Bbv12I GWGCWC 2 cut(s) 475, 554
BbvI GCAGC 1 cut(s) 581
BccI CCATC 3 cut(s) 513, 655, 863
BceAI ACGGC 1 cut(s) 509
BciT130I CCWGG 3 cut(s) 392, 678, 888
BciVI GTATCC 1 cut(s) 674
BclI TGATCA 2 cut(s) 46, 441
BcoDI GTCTC 2 cut(s) 329, 428
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 3 cut(s) 12, 54, 405
BfuI GTATCC 1 cut(s) 674
BglII AGATCT 1 cut(s) 160
BisI GCNGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 571
Bme1390I CCNGG 3 cut(s) 392, 678, 888
BmeRI GACNNNNNGTC 1 cut(s) 297
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 522
BmiI GGNNCC 1 cut(s) 377
BmrFI CCNGG 3 cut(s) 392, 678, 888
BmsI GCATC 1 cut(s) 674
BpmI CTGGAG 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 880
BsaBI GATNNNNATC 1 cut(s) 744
BsaI GGTCTC 1 cut(s) 329
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 727
Bse1I ACTGG 2 cut(s) 573, 588
Bse3DI GCAATG 1 cut(s) 657
Bse8I GATNNNNATC 1 cut(s) 744
BseBI CCWGG 3 cut(s) 392, 678, 888
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 2 cut(s) 345, 727
BseMI GCAATG 1 cut(s) 657
BseMII CTCAG 1 cut(s) 370
BseNI ACTGG 2 cut(s) 573, 588
BseSI GKGCMC 2 cut(s) 475, 554
BseXI GCAGC 1 cut(s) 581
BshFI GGCC 1 cut(s) 524
BsiHKAI GWGCWC 2 cut(s) 475, 554
BsiHKCI CYCGRG 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 345, 727
BsmAI GTCTC 2 cut(s) 329, 428
BsnI GGCC 1 cut(s) 524
Bso31I GGTCTC 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 475, 554
Bsp143I GATC 4 cut(s) 46, 160, 441, 831
BspACI CCGC 2 cut(s) 34, 346
BspANI GGCC 1 cut(s) 524
BspCNI CTCAG 1 cut(s) 369
BspHI TCATGA 1 cut(s) 751
BspLI GGNNCC 1 cut(s) 377
BspQI GCTCTTC 1 cut(s) 594
BspTNI GGTCTC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 657
BsrI ACTGG 2 cut(s) 573, 588
BssMI GATC 4 cut(s) 46, 160, 441, 831
BssNAI GTATAC 2 cut(s) 24, 306
BssSI CACGAG 1 cut(s) 553
Bst1107I GTATAC 2 cut(s) 24, 306
Bst2BI CACGAG 1 cut(s) 553
Bst2UI CCWGG 3 cut(s) 392, 678, 888
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 594
BstAPI GCANNNNNTGC 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 648
BstDEI CTNAG 2 cut(s) 356, 416
BstKTI GATC 4 cut(s) 49, 163, 444, 834
BstMAI GTCTC 2 cut(s) 329, 428
BstMBI GATC 4 cut(s) 46, 160, 441, 831
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstNI CCWGG 3 cut(s) 392, 678, 888
BstSCI CCNGG 3 cut(s) 390, 676, 886
BstSLI GKGCMC 2 cut(s) 475, 554
BstV1I GCAGC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BstZ17I GTATAC 2 cut(s) 24, 306
BsuI GTATCC 1 cut(s) 674
BsuRI GGCC 1 cut(s) 524
BtsIMutI CAGTG 2 cut(s) 294, 580
Cac8I GCNNGC 1 cut(s) 648
CciI TCATGA 1 cut(s) 751
Cfr13I GGNCC 1 cut(s) 522
Csp6I GTAC 2 cut(s) 194, 791
CspCI CAANNNNNGTGG 2 cut(s) 244, 279
CviAII CATG 4 cut(s) 191, 396, 752, 760
CviQI GTAC 2 cut(s) 194, 791
DdeI CTNAG 2 cut(s) 356, 416
DpnI GATC 4 cut(s) 48, 162, 443, 833
DpnII GATC 4 cut(s) 46, 160, 441, 831
DriI GACNNNNNGTC 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 594
Eam1105I GACNNNNNGTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 594
Eco31I GGTCTC 1 cut(s) 329
Eco32I GATATC 1 cut(s) 757
Eco88I CYCGRG 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 559
EcoRII CCWGG 3 cut(s) 390, 676, 886
EcoRV GATATC 1 cut(s) 757
FaeI CATG 4 cut(s) 194, 399, 755, 763
FatI CATG 4 cut(s) 190, 395, 751, 759
FbaI TGATCA 2 cut(s) 46, 441
FblI GTMKAC 2 cut(s) 23, 305
Fnu4HI GCNGC 1 cut(s) 570
Fsp4HI GCNGC 1 cut(s) 570
FspBI CTAG 3 cut(s) 12, 54, 405
GluI GCNGC 1 cut(s) 570
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 524
Hin1II CATG 4 cut(s) 194, 399, 755, 763
HinfI GANTC 6 cut(s) 232, 250, 694, 745, 811, 842
Hpy166II GTNNAC 7 cut(s) 24, 306, 422, 473, 552, 730, 791
Hpy188I TCNGA 2 cut(s) 318, 505
Hpy188III TCNNGA 6 cut(s) 54, 229, 326, 752, 829, 859
Hpy8I GTNNAC 7 cut(s) 24, 306, 422, 473, 552, 730, 791
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 1 cut(s) 731
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 4 cut(s) 473, 552, 569, 650
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 2 cut(s) 356, 416
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 4 cut(s) 194, 399, 755, 763
Ksp22I TGATCA 2 cut(s) 46, 441
Kzo9I GATC 4 cut(s) 46, 160, 441, 831
LguI GCTCTTC 1 cut(s) 594
LmnI GCTCC 1 cut(s) 127
Lsp1109I GCAGC 1 cut(s) 581
LweI GCATC 1 cut(s) 674
MaeI CTAG 3 cut(s) 12, 54, 405
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 3 cut(s) 289, 386, 691
MalI GATC 4 cut(s) 48, 162, 443, 833
MboI GATC 4 cut(s) 46, 160, 441, 831
MboII GAAGA 5 cut(s) 160, 581, 601, 660, 811
MfeI CAATTG 1 cut(s) 341
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 2 cut(s) 475, 554
MluCI AATT 5 cut(s) 67, 341, 545, 559, 710
MlyI GAGTC 2 cut(s) 244, 688
MnlI CCTC 2 cut(s) 73, 549
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 5 cut(s) 62, 122, 246, 542, 765
MslI CAYNNNNRTG 1 cut(s) 689
MspR9I CCNGG 3 cut(s) 392, 678, 888
MunI CAATTG 1 cut(s) 341
MvaI CCWGG 3 cut(s) 392, 678, 888
MwoI GCNNNNNNNGC 1 cut(s) 401
NdeII GATC 4 cut(s) 46, 160, 441, 831
NlaIII CATG 4 cut(s) 194, 399, 755, 763
NlaIV GGNNCC 1 cut(s) 377
NmuCI GTSAC 2 cut(s) 289, 691
PagI TCATGA 1 cut(s) 751
PciSI GCTCTTC 1 cut(s) 594
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 4 cut(s) 232, 745, 811, 842
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 1 cut(s) 571
PleI GAGTC 2 cut(s) 244, 688
PpsI GAGTC 2 cut(s) 244, 688
Psp6I CCWGG 3 cut(s) 390, 676, 886
PspGI CCWGG 3 cut(s) 390, 676, 886
PspN4I GGNNCC 1 cut(s) 377
PspPI GGNCC 1 cut(s) 522
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 2 cut(s) 195, 792
RsaNI GTAC 2 cut(s) 194, 791
RseI CAYNNNNRTG 1 cut(s) 689
SapI GCTCTTC 1 cut(s) 594
SaqAI TTAA 5 cut(s) 62, 122, 246, 542, 765
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 4 cut(s) 46, 160, 441, 831
Sau96I GGNCC 1 cut(s) 522
SchI GAGTC 2 cut(s) 244, 688
ScrFI CCNGG 3 cut(s) 392, 678, 888
SduI GDGCHC 2 cut(s) 475, 554
SetI ASST 7 cut(s) 29, 46, 211, 223, 279, 881, 892
SfaNI GCATC 1 cut(s) 674
SmiMI CAYNNNNRTG 1 cut(s) 689
SmlI CTYRAG 1 cut(s) 859
SmoI CTYRAG 1 cut(s) 859
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 5 cut(s) 67, 341, 545, 559, 710
SsiI CCGC 2 cut(s) 34, 346
SspI AATATT 1 cut(s) 640
SspMI CTAG 3 cut(s) 12, 54, 405
StyD4I CCNGG 3 cut(s) 390, 676, 886
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 612
TasI AATT 5 cut(s) 67, 341, 545, 559, 710
TatI WGTACW 1 cut(s) 790
TfiI GAWTC 4 cut(s) 232, 745, 811, 842
Tru1I TTAA 5 cut(s) 62, 122, 246, 542, 765
Tru9I TTAA 5 cut(s) 62, 122, 246, 542, 765
TscAI CASTG 2 cut(s) 294, 580
TseFI GTSAC 2 cut(s) 289, 691
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 2 cut(s) 289, 691
TspDTI ATGAA 3 cut(s) 179, 504, 650
TspRI CASTG 2 cut(s) 294, 580
VneI GTGCAC 2 cut(s) 471, 550
XapI RAATTY 2 cut(s) 559, 710
XbaI TCTAGA 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 580
XmiI GTMKAC 2 cut(s) 23, 305
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 3 cut(s) 12, 54, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.