Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003392

Physical Location & Seq

Genomic Coordinates Reverse (-)

11635877 .. 11636720

Gene Structure 844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGAAACTGCATATGCGTAACGGAAAAAACGACGACGTCGTGGTCAGGAGACGATAATGGATCATATAACAAGAGAAGGAGAAGAAGAAGATCCACCGTGGTTCACGACGACAACGACGACGGAGAGAAGCTGCTCGGAGAAACAAGCAACGTTACGTCAACAAGTTCGTCATCGTCTTCTGAGAGAAGAGAGATTAAGATAAGGATAACGAAAAAGGAACTTGAAGATCTCATGAGAAACATTGGTTTGAAGAGTTTAACGGCGGAAGAGATTCTTTCTAAGTTAATTTTCGAAGGTGGAGACCAAATCGGATTCTCTGCGGTCGATGTGACGAATCACCACCAACCATGGAAACCGGTGTTGCAAAGCATACCGGAGATGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.51

Weight (kDa)

5.94

Isoelectric Point (pI)

65.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21920
fragaria_vesca	FvH4_3g02220 FvH4_3g22640
malus_domestica	MD05G1345200.v1.1 MD10G1320500.v1.1 MD11G1218800.v1.1
prunus_persica	Prupe.4G021600_v2.0.a1 Prupe.4G212400_v2.0.a1
pyrus_communis	pycom03g15280 pycom05g31410 pycom10g27120 pycom11g19280
rosa_chinensis	RchiOBHm_Chr5g0003291 RchiOBHm_Chr5g0039411
rosa_laevigata	RLG00000031122 RLG00000033912
rosa_multiflora	Rmu_co8348757.1_g000001 Rmu_sc0004395.1_g000009 Rmu_sc0007310.1_g000001 Rmu_sc0010917.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040540 Rroxscaffold_1G00072670
rosa_rugosa	Rorug04G0402500 Rorug05G0179000
rosa_samantha	Rh5AG028600 Rh5AG265600 Rh5BG028700 Rh5BG270000 Rh5CG031000 Rh5CG303100 Rh5DG029200 Rh5DG278100
rosa_wichuraiana	Rw0G014060 Rw5G002660 Rw5G002710 Rw5G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	43
AatII	GACGTC	1 cut(s)	41
AciI	CCGC	2 cut(s)	266, 323
AclI	AACGTT	1 cut(s)	153
AclWI	GGATC	2 cut(s)	70, 87
AcyI	GRCGYC	1 cut(s)	38
AgeI	ACCGGT	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	227, 253
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	2 cut(s)	45, 297
AlwI	GGATC	2 cut(s)	70, 87
ApeKI	GCWGC	1 cut(s)	133
AsiGI	ACCGGT	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	332
AsuII	TTCGAA	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	45, 297
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	99, 350
BsaWI	WCCGGW	2 cut(s)	358, 376
Bse118I	RCCGGY	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	99, 350
BseMII	CTCAG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	327
BshTI	ACCGGT	1 cut(s)	358
BsiEI	CGRYCG	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	359, 377
BsmAI	GTCTC	2 cut(s)	45, 297
BsmBI	CGTCTC	1 cut(s)	45
Bso31I	GGTCTC	1 cut(s)	297
Bsp119I	TTCGAA	1 cut(s)	294
Bsp143I	GATC	3 cut(s)	62, 92, 229
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	2 cut(s)	266, 323
BspCNI	CTCAG	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	234
BspPI	GGATC	2 cut(s)	70, 87
BspT104I	TTCGAA	1 cut(s)	294
BspTNI	GGTCTC	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	99, 350
BssMI	GATC	3 cut(s)	62, 92, 229
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	3 cut(s)	184, 248, 264
BstACI	GRCGYC	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	183, 282
BstDSI	CCRYGG	2 cut(s)	99, 350
BstKTI	GATC	3 cut(s)	65, 95, 232
BstMAI	GTCTC	2 cut(s)	45, 297
BstMBI	GATC	3 cut(s)	62, 92, 229
BstMCI	CGRYCG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	2 cut(s)	92, 229
BstYI	RGATCY	2 cut(s)	92, 229
BtgI	CCRYGG	2 cut(s)	99, 350
CciI	TCATGA	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	358
CspAI	ACCGGT	1 cut(s)	358
CviAII	CATG	2 cut(s)	235, 351
CviJI	RGCY	1 cut(s)	133
CviKI_1	RGCY	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	183, 282
DpnI	GATC	3 cut(s)	64, 94, 231
DpnII	GATC	3 cut(s)	62, 92, 229
DrdI	GACNNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	3 cut(s)	184, 248, 264
EarI	CTCTTC	3 cut(s)	184, 248, 264
EciI	GGCGGA	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	2 cut(s)	238, 354
FaiI	YATR	7 cut(s)	14, 16, 67, 69, 236, 352, 374
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	2 cut(s)	234, 350
FauNDI	CATATG	1 cut(s)	14
Fnu4HI	GCNGC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	134
HapII	CCGG	2 cut(s)	359, 377
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	238, 354
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	3 cut(s)	274, 315, 337
HpaII	CCGG	2 cut(s)	359, 377
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	106, 162
Hpy188I	TCNGA	3 cut(s)	140, 184, 314
Hpy188III	TCNNGA	3 cut(s)	48, 107, 235
Hpy8I	GTNNAC	2 cut(s)	106, 162
Hpy99I	CGWCG	6 cut(s)	37, 40, 43, 113, 122, 125
HpyAV	CCTTC	2 cut(s)	72, 290
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	3 cut(s)	38, 153, 158
HpyCH4V	TGCA	2 cut(s)	12, 367
HpyF3I	CTNAG	2 cut(s)	183, 282
HpySE526I	ACGT	3 cut(s)	38, 153, 158
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	238, 354
Kzo9I	GATC	3 cut(s)	62, 92, 229
LpnPI	CCDG	2 cut(s)	33, 372
Lsp1109I	GCAGC	1 cut(s)	120
MaeII	ACGT	3 cut(s)	38, 153, 158
MaeIII	GTNAC	3 cut(s)	19, 154, 331
MalI	GATC	3 cut(s)	64, 94, 231
MboI	GATC	3 cut(s)	62, 92, 229
MboII	GAAGA	8 cut(s)	96, 99, 102, 171, 201, 239, 265, 281
MflI	RGATCY	2 cut(s)	92, 229
MluCI	AATT	1 cut(s)	288
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	3 cut(s)	198, 260, 287
MspI	CCGG	2 cut(s)	359, 377
NcoI	CCATGG	1 cut(s)	350
NdeI	CATATG	1 cut(s)	14
NdeII	GATC	3 cut(s)	62, 92, 229
NlaIII	CATG	2 cut(s)	238, 354
NmuCI	GTSAC	1 cut(s)	331
NspV	TTCGAA	1 cut(s)	294
PagI	TCATGA	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	4 cut(s)	29, 38, 114, 117
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	274, 315, 337
PflFI	GACNNNGTC	1 cut(s)	37
PinAI	ACCGGT	1 cut(s)	358
PkrI	GCNGC	1 cut(s)	135
Psp1406I	AACGTT	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	92, 229
PsyI	GACNNNGTC	1 cut(s)	37
SaqAI	TTAA	3 cut(s)	198, 260, 287
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	3 cut(s)	62, 92, 229
SetI	ASST	5 cut(s)	41, 135, 156, 161, 301
SfuI	TTCGAA	1 cut(s)	294
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	2 cut(s)	266, 323
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	3 cut(s)	41, 156, 161
TaqI	TCGA	2 cut(s)	294, 327
TasI	AATT	1 cut(s)	288
TfiI	GAWTC	3 cut(s)	274, 315, 337
Tru1I	TTAA	3 cut(s)	198, 260, 287
Tru9I	TTAA	3 cut(s)	198, 260, 287
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	331
TspGWI	ACGGA	2 cut(s)	38, 138
Tth111I	GACNNNGTC	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	273
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.