Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003392

Physical Location & Seq

Genomic Coordinates Reverse (-)

58268995 .. 58269402

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGGAATTGTATAAGGCACGATAAATCATCGTCGGTGAATTGGGGAGGTGAGGAGTGGGGGTCTCTGGCAAATGATGATCGAGATCACAAGCATATGCGGAAGACGAAGAAGATAGAAGAAGAAGGAGAAGAGGGGCTTCTTGGAGGTGAAGATGGTAAATTTGGTTCTTACGATTCTTCGGAGACGAAAGTTCCGCCACCAGCAGGAGCTACAGAAGTGAAGATAAAGATGACGAAGAAGCAGCTGGAGGAGTTGATGGGTAGGGTGGAGCTGAAGCAAATGACTGTGCAGCAGGTTTTGGCACAGTTGATCATGAGCGTCAGTAGTAATGATAGTGATCCATACGAGACTGATCATCAACGGCCGTGGAGGCCTGTCCTTCAGAGCATTCCCGAGGTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.18

Weight (kDa)

5.24

Isoelectric Point (pI)

58.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21920
fragaria_vesca	FvH4_3g02220 FvH4_3g22640
malus_domestica	MD05G1345200.v1.1 MD10G1320500.v1.1 MD11G1218800.v1.1
prunus_persica	Prupe.4G021600_v2.0.a1 Prupe.4G212400_v2.0.a1
pyrus_communis	pycom03g15280 pycom05g31410 pycom10g27120 pycom11g19280
rosa_chinensis	RchiOBHm_Chr5g0003291 RchiOBHm_Chr5g0039411
rosa_laevigata	RLG00000031122 RLG00000033912
rosa_multiflora	Rmu_co8348757.1_g000001 Rmu_sc0004395.1_g000009 Rmu_sc0007310.1_g000001 Rmu_sc0010917.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040540 Rroxscaffold_1G00072670
rosa_rugosa	Rorug04G0402500 Rorug05G0179000
rosa_samantha	Rh5AG028600 Rh5AG265600 Rh5BG028700 Rh5BG270000 Rh5CG031000 Rh5CG303100 Rh5DG029200 Rh5DG278100
rosa_wichuraiana	Rw0G014060 Rw5G002660 Rw5G002710 Rw5G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
AciI	CCGC	2 cut(s)	100, 197
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	2 cut(s)	296, 368
AfiI	CCNNNNNNNGG	1 cut(s)	206
AluBI	AGCT	3 cut(s)	212, 247, 274
AluI	AGCT	3 cut(s)	212, 247, 274
Alw26I	GTCTC	3 cut(s)	69, 179, 344
AlwI	GGATC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	2 cut(s)	365, 374
ApeKI	GCWGC	2 cut(s)	244, 292
ApoI	RAATTY	1 cut(s)	161
AsuHPI	GGTGA	3 cut(s)	49, 62, 161
AvaI	CYCGRG	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	256, 304
BccI	CCATC	2 cut(s)	149, 253
BceAI	ACGGC	2 cut(s)	352, 380
BclI	TGATCA	2 cut(s)	312, 355
BcoDI	GTCTC	3 cut(s)	69, 179, 344
BfmI	CTRYAG	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	286
BglI	GCCNNNNNGGC	1 cut(s)	373
BisI	GCNGC	2 cut(s)	245, 293
BlsI	GCNGC	2 cut(s)	246, 294
BmeT110I	CYCGRG	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	269
BsaBI	GATNNNNATC	2 cut(s)	84, 339
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	368, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse8I	GATNNNNATC	2 cut(s)	84, 339
BseDI	CCNNGG	2 cut(s)	368, 396
BseJI	GATNNNNATC	2 cut(s)	84, 339
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseRI	GAGGAG	2 cut(s)	68, 266
BseX3I	CGGCCG	1 cut(s)	365
BseXI	GCAGC	2 cut(s)	256, 304
BsgI	GTGCAG	1 cut(s)	311
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	2 cut(s)	367, 376
BsiEI	CGRYCG	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	3 cut(s)	69, 179, 344
BsmBI	CGTCTC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	2 cut(s)	367, 376
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	395
Bsp143I	GATC	5 cut(s)	79, 85, 312, 340, 355
BspACI	CCGC	2 cut(s)	100, 197
BspANI	GGCC	2 cut(s)	367, 376
BspHI	TCATGA	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	368, 396
BssMI	GATC	5 cut(s)	79, 85, 312, 340, 355
Bst4CI	ACNGT	2 cut(s)	289, 309
Bst6I	CTCTTC	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	368
BstKTI	GATC	5 cut(s)	82, 88, 315, 343, 358
BstMAI	GTCTC	3 cut(s)	69, 179, 344
BstMBI	GATC	5 cut(s)	79, 85, 312, 340, 355
BstMCI	CGRYCG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	256, 304
BstV2I	GAAGAC	1 cut(s)	110
BstZI	CGGCCG	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	367, 376
BtgI	CCRYGG	1 cut(s)	368
BveI	ACCTGC	1 cut(s)	286
CciI	TCATGA	1 cut(s)	315
CseI	GACGC	1 cut(s)	310
CspCI	CAANNNNNGTGG	2 cut(s)	350, 385
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	6 cut(s)	139, 212, 247, 274, 367, 376
CviKI_1	RGCY	6 cut(s)	139, 212, 247, 274, 367, 376
DpnI	GATC	5 cut(s)	81, 87, 314, 342, 357
DpnII	GATC	5 cut(s)	79, 85, 312, 340, 355
EaeI	YGGCCR	1 cut(s)	365
EagI	CGGCCG	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	186
EclXI	CGGCCG	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	69
Eco52I	CGGCCG	1 cut(s)	365
Eco57I	CTGAAG	2 cut(s)	296, 368
Eco88I	CYCGRG	1 cut(s)	395
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	1 cut(s)	319
FaiI	YATR	5 cut(s)	14, 96, 98, 317, 346
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	1 cut(s)	315
FauNDI	CATATG	1 cut(s)	96
FbaI	TGATCA	2 cut(s)	312, 355
Fnu4HI	GCNGC	2 cut(s)	245, 293
Fsp4HI	GCNGC	2 cut(s)	245, 293
GluI	GCNGC	2 cut(s)	245, 293
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	367, 376
HgaI	GACGC	1 cut(s)	310
Hin1II	CATG	1 cut(s)	319
HinfI	GANTC	1 cut(s)	176
HphI	GGTGA	3 cut(s)	49, 62, 161
Hpy188I	TCNGA	2 cut(s)	184, 387
Hpy188III	TCNNGA	3 cut(s)	83, 316, 395
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	2 cut(s)	119, 392
HpyCH4III	ACNGT	2 cut(s)	289, 309
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
Hsp92II	CATG	1 cut(s)	319
Ksp22I	TGATCA	2 cut(s)	312, 355
Kzo9I	GATC	5 cut(s)	79, 85, 312, 340, 355
LmnI	GCTCC	2 cut(s)	209, 271
LpnPI	CCDG	6 cut(s)	53, 192, 216, 233, 281, 390
Lsp1109I	GCAGC	2 cut(s)	256, 304
MalI	GATC	5 cut(s)	81, 87, 314, 342, 357
MboI	GATC	5 cut(s)	79, 85, 312, 340, 355
MfeI	CAATTG	1 cut(s)	403
MluCI	AATT	4 cut(s)	7, 40, 161, 403
MnlI	CCTC	7 cut(s)	41, 46, 127, 140, 244, 366, 391
MspA1I	CMGCKG	1 cut(s)	247
MunI	CAATTG	1 cut(s)	403
Mva1269I	GAATGC	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	373
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	5 cut(s)	79, 85, 312, 340, 355
NlaIII	CATG	1 cut(s)	319
PagI	TCATGA	1 cut(s)	315
PceI	AGGCCT	1 cut(s)	376
PctI	GAATGC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	246, 294
PsrI	GAACNNNNNNTAC	2 cut(s)	151, 183
PvuII	CAGCTG	1 cut(s)	247
SatI	GCNGC	2 cut(s)	245, 293
Sau3AI	GATC	5 cut(s)	79, 85, 312, 340, 355
SetI	ASST	7 cut(s)	52, 151, 214, 249, 276, 300, 402
SfcI	CTRYAG	1 cut(s)	213
SfiI	GGCCNNNNNGGCC	1 cut(s)	373
Sse9I	AATT	4 cut(s)	7, 40, 161, 403
SseBI	AGGCCT	1 cut(s)	376
SsiI	CCGC	2 cut(s)	100, 197
StuI	AGGCCT	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	289, 309
TaqI	TCGA	1 cut(s)	82
TasI	AATT	4 cut(s)	7, 40, 161, 403
TfiI	GAWTC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	244, 292
XapI	RAATTY	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.