Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007310.1

Orthogroup ID

OG0003392

Physical Location & Seq

Genomic Coordinates Forward (+)

1647 .. 2057

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007310.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atggggaattgtataaggcacgataaatcgtcgtcggtgaattggggaggtgaggagtgggggtctctggcaaatgatgatcgagatcacaagcatatgcggaagacgaagaagatagaagaagaagaaggagaagaggggcttcttggaggtgaagatggtaaatttggttcttacgattcttcggagacgaaagttccaccaccagcaggagctacagaagtgaagataaagatgactaagaagcagctggaggagttgatgggtagggtggagctgaagcaaatgactgtgcagcaggttttggcacagttgatcatgagcgtcagtagtaatgatagtgatccatacgagactgatcatcaacggccgtggaggcctgtccttcagagcattcccgaggtcaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.31

Weight (kDa)

5.13

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21920
fragaria_vesca	FvH4_3g02220 FvH4_3g22640
malus_domestica	MD05G1345200.v1.1 MD10G1320500.v1.1 MD11G1218800.v1.1
prunus_persica	Prupe.4G021600_v2.0.a1 Prupe.4G212400_v2.0.a1
pyrus_communis	pycom03g15280 pycom05g31410 pycom10g27120 pycom11g19280
rosa_chinensis	RchiOBHm_Chr5g0003291 RchiOBHm_Chr5g0039411
rosa_laevigata	RLG00000031122 RLG00000033912
rosa_multiflora	Rmu_co8348757.1_g000001 Rmu_sc0004395.1_g000009 Rmu_sc0007310.1_g000001 Rmu_sc0010917.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040540 Rroxscaffold_1G00072670
rosa_rugosa	Rorug04G0402500 Rorug05G0179000
rosa_samantha	Rh5AG028600 Rh5AG265600 Rh5BG028700 Rh5BG270000 Rh5CG031000 Rh5CG303100 Rh5DG029200 Rh5DG278100
rosa_wichuraiana	Rw0G014060 Rw5G002660 Rw5G002710 Rw5G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	2 cut(s)	299, 371
AfiI	CCNNNNNNNGG	1 cut(s)	209
AluBI	AGCT	3 cut(s)	215, 250, 277
AluI	AGCT	3 cut(s)	215, 250, 277
Alw26I	GTCTC	3 cut(s)	69, 182, 347
AlwI	GGATC	1 cut(s)	338
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	2 cut(s)	368, 377
ApeKI	GCWGC	2 cut(s)	247, 295
ApoI	RAATTY	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	49, 62, 164
AvaI	CYCGRG	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	259, 307
BccI	CCATC	2 cut(s)	152, 256
BceAI	ACGGC	2 cut(s)	355, 383
BclI	TGATCA	2 cut(s)	315, 358
BcoDI	GTCTC	3 cut(s)	69, 182, 347
BfmI	CTRYAG	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	289
BglI	GCCNNNNNGGC	1 cut(s)	376
BisI	GCNGC	2 cut(s)	248, 296
BlsI	GCNGC	2 cut(s)	249, 297
BmeT110I	CYCGRG	1 cut(s)	398
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	272
BsaBI	GATNNNNATC	2 cut(s)	84, 342
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	371, 399
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse8I	GATNNNNATC	2 cut(s)	84, 342
BseDI	CCNNGG	2 cut(s)	371, 399
BseJI	GATNNNNATC	2 cut(s)	84, 342
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	68, 269
BseX3I	CGGCCG	1 cut(s)	368
BseXI	GCAGC	2 cut(s)	259, 307
BsgI	GTGCAG	1 cut(s)	314
Bsh1285I	CGRYCG	1 cut(s)	371
BshFI	GGCC	2 cut(s)	370, 379
BsiEI	CGRYCG	1 cut(s)	371
BsiHKCI	CYCGRG	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	3 cut(s)	69, 182, 347
BsmBI	CGTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	2 cut(s)	370, 379
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	398
Bsp143I	GATC	5 cut(s)	79, 85, 315, 343, 358
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	2 cut(s)	370, 379
BspHI	TCATGA	1 cut(s)	318
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	371, 399
BssMI	GATC	5 cut(s)	79, 85, 315, 343, 358
Bst4CI	ACNGT	2 cut(s)	292, 312
Bst6I	CTCTTC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	371
BstKTI	GATC	5 cut(s)	82, 88, 318, 346, 361
BstMAI	GTCTC	3 cut(s)	69, 182, 347
BstMBI	GATC	5 cut(s)	79, 85, 315, 343, 358
BstMCI	CGRYCG	1 cut(s)	371
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	259, 307
BstV2I	GAAGAC	1 cut(s)	110
BstZI	CGGCCG	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	370, 379
BtgI	CCRYGG	1 cut(s)	371
BveI	ACCTGC	1 cut(s)	289
CciI	TCATGA	1 cut(s)	318
CseI	GACGC	1 cut(s)	313
CspCI	CAANNNNNGTGG	2 cut(s)	353, 388
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	6 cut(s)	142, 215, 250, 277, 370, 379
CviKI_1	RGCY	6 cut(s)	142, 215, 250, 277, 370, 379
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	5 cut(s)	81, 87, 317, 345, 360
DpnII	GATC	5 cut(s)	79, 85, 315, 343, 358
EaeI	YGGCCR	1 cut(s)	368
EagI	CGGCCG	1 cut(s)	368
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EclXI	CGGCCG	1 cut(s)	368
Eco147I	AGGCCT	1 cut(s)	379
Eco31I	GGTCTC	1 cut(s)	69
Eco52I	CGGCCG	1 cut(s)	368
Eco57I	CTGAAG	2 cut(s)	299, 371
Eco88I	CYCGRG	1 cut(s)	398
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	1 cut(s)	322
FaiI	YATR	5 cut(s)	14, 96, 98, 320, 349
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FatI	CATG	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	96
FbaI	TGATCA	2 cut(s)	315, 358
Fnu4HI	GCNGC	2 cut(s)	248, 296
Fsp4HI	GCNGC	2 cut(s)	248, 296
GluI	GCNGC	2 cut(s)	248, 296
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	370, 379
HgaI	GACGC	1 cut(s)	313
Hin1II	CATG	1 cut(s)	322
HinfI	GANTC	1 cut(s)	179
HphI	GGTGA	3 cut(s)	49, 62, 164
Hpy188I	TCNGA	2 cut(s)	187, 390
Hpy188III	TCNNGA	3 cut(s)	83, 319, 398
Hpy99I	CGWCG	2 cut(s)	34, 37
HpyAV	CCTTC	2 cut(s)	122, 395
HpyCH4III	ACNGT	2 cut(s)	292, 312
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	322
Ksp22I	TGATCA	2 cut(s)	315, 358
Kzo9I	GATC	5 cut(s)	79, 85, 315, 343, 358
LmnI	GCTCC	2 cut(s)	212, 274
LpnPI	CCDG	6 cut(s)	53, 195, 219, 236, 284, 393
Lsp1109I	GCAGC	2 cut(s)	259, 307
MalI	GATC	5 cut(s)	81, 87, 317, 345, 360
MboI	GATC	5 cut(s)	79, 85, 315, 343, 358
MfeI	CAATTG	1 cut(s)	406
MluCI	AATT	4 cut(s)	7, 40, 164, 406
MnlI	CCTC	7 cut(s)	41, 46, 130, 143, 247, 369, 394
MspA1I	CMGCKG	1 cut(s)	250
MunI	CAATTG	1 cut(s)	406
Mva1269I	GAATGC	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	5 cut(s)	79, 85, 315, 343, 358
NlaIII	CATG	1 cut(s)	322
PagI	TCATGA	1 cut(s)	318
PceI	AGGCCT	1 cut(s)	379
PctI	GAATGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	249, 297
PsrI	GAACNNNNNNTAC	2 cut(s)	154, 186
PvuII	CAGCTG	1 cut(s)	250
SatI	GCNGC	2 cut(s)	248, 296
Sau3AI	GATC	5 cut(s)	79, 85, 315, 343, 358
SetI	ASST	7 cut(s)	52, 154, 217, 252, 279, 303, 405
SfcI	CTRYAG	1 cut(s)	216
SfiI	GGCCNNNNNGGCC	1 cut(s)	376
Sse9I	AATT	4 cut(s)	7, 40, 164, 406
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	1 cut(s)	100
StuI	AGGCCT	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	292, 312
TaqI	TCGA	1 cut(s)	82
TasI	AATT	4 cut(s)	7, 40, 164, 406
TfiI	GAWTC	1 cut(s)	179
TseI	GCWGC	2 cut(s)	247, 295
XapI	RAATTY	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.