Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003392

Physical Location & Seq

Genomic Coordinates Forward (+)

2116721 .. 2117957

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG029200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGGAACTGCTGTTTGAGGCGTGGTTCTGCGGTTTGGGCCAACGACGACGACGGGTGGGTCAACGTGTGTAAGCTCCACCAGTCGCAGCAGCCGGAAAAGCAGAAGCTTCTCGGTGAGGTTCAATTCAGATCTTCTTCAGGTTCCTCCTCGTCCTCCTGTAGACGAAGACCGAGTAGTAGCGGTGGAGATCATCATGAGGTGAAGATAAAGATGACAAAGAGGGAGCTGGAAGAGTTGGTGGGATCAAGAGGCGGCGCTATGGACGTGTCGACGGTGGAGCAACTATTGGCGAGGGTGATCGACGACGGCGATGATCGGTATGAGGAGCATCAACGGCCGTGGAGGCCTGCCCTCCAAAGTATTCCGGAGGTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.11

Weight (kDa)

6.08

Isoelectric Point (pI)

73.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21920
fragaria_vesca	FvH4_3g02220 FvH4_3g22640
malus_domestica	MD05G1345200.v1.1 MD10G1320500.v1.1 MD11G1218800.v1.1
prunus_persica	Prupe.4G021600_v2.0.a1 Prupe.4G212400_v2.0.a1
pyrus_communis	pycom03g15280 pycom05g31410 pycom10g27120 pycom11g19280
rosa_chinensis	RchiOBHm_Chr5g0003291 RchiOBHm_Chr5g0039411
rosa_laevigata	RLG00000031122 RLG00000033912
rosa_multiflora	Rmu_co8348757.1_g000001 Rmu_sc0004395.1_g000009 Rmu_sc0007310.1_g000001 Rmu_sc0010917.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040540 Rroxscaffold_1G00072670
rosa_rugosa	Rorug04G0402500 Rorug05G0179000
rosa_samantha	Rh5AG028600 Rh5AG265600 Rh5BG028700 Rh5BG270000 Rh5CG031000 Rh5CG303100 Rh5DG029200 Rh5DG278100
rosa_wichuraiana	Rw0G014060 Rw5G002660 Rw5G002710 Rw5G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccI	GTMKAC	2 cut(s)	163, 272
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	3 cut(s)	32, 183, 255
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	123
AflIII	ACRYGT	2 cut(s)	66, 267
AgsI	TTSAA	1 cut(s)	125
AjiI	CACGTC	1 cut(s)	268
AluBI	AGCT	3 cut(s)	76, 109, 229
AluI	AGCT	3 cut(s)	76, 109, 229
AlwI	GGATC	1 cut(s)	253
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	3 cut(s)	39, 338, 347
ApeKI	GCWGC	2 cut(s)	88, 91
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	3 cut(s)	128, 214, 310
BbsI	GAAGAC	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	100, 103
BceAI	ACGGC	3 cut(s)	325, 325, 353
BfmI	CTRYAG	1 cut(s)	160
BfoI	RGCGCY	1 cut(s)	261
BglI	GCCNNNNNGGC	1 cut(s)	346
BglII	AGATCT	1 cut(s)	131
BisI	GCNGC	3 cut(s)	89, 92, 256
BlsI	GCNGC	3 cut(s)	90, 93, 257
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	145
BmsI	GCATC	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	341
BsaWI	WCCGGW	1 cut(s)	367
Bse1I	ACTGG	1 cut(s)	82
BseAI	TCCGGA	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	2 cut(s)	139, 341
BseX3I	CGGCCG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	100, 103
Bsh1285I	CGRYCG	1 cut(s)	341
BshFI	GGCC	3 cut(s)	41, 340, 349
BsiEI	CGRYCG	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	95, 368
BsnI	GGCC	3 cut(s)	41, 340, 349
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	5 cut(s)	131, 190, 245, 300, 316
BspACI	CCGC	3 cut(s)	32, 183, 255
BspANI	GGCC	3 cut(s)	41, 340, 349
BspEI	TCCGGA	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	5 cut(s)	131, 190, 245, 300, 316
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	341
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	5 cut(s)	134, 193, 248, 303, 319
BstMBI	GATC	5 cut(s)	131, 190, 245, 300, 316
BstMCI	CGRYCG	1 cut(s)	341
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 100, 337, 346
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	100, 103
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BstZI	CGGCCG	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	41, 340, 349
BtgI	CCRYGG	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	351
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	39
CspCI	CAANNNNNGTGG	2 cut(s)	323, 358
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	7 cut(s)	41, 76, 94, 109, 229, 340, 349
CviKI_1	RGCY	7 cut(s)	41, 76, 94, 109, 229, 340, 349
DpnI	GATC	5 cut(s)	133, 192, 247, 302, 318
DpnII	GATC	5 cut(s)	131, 190, 245, 300, 316
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	338
EagI	CGGCCG	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EclXI	CGGCCG	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	349
Eco52I	CGGCCG	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	123
FaeI	CATG	1 cut(s)	200
FaiI	YATR	3 cut(s)	198, 263, 324
FatI	CATG	1 cut(s)	196
FblI	GTMKAC	2 cut(s)	163, 272
Fnu4HI	GCNGC	3 cut(s)	89, 92, 256
Fsp4HI	GCNGC	3 cut(s)	89, 92, 256
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	3 cut(s)	89, 92, 256
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	41, 340, 349
HapII	CCGG	2 cut(s)	95, 368
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	2 cut(s)	64, 273
HindII	GTYRAC	2 cut(s)	64, 273
HindIII	AAGCTT	1 cut(s)	107
HpaII	CCGG	2 cut(s)	95, 368
HphI	GGTGA	3 cut(s)	128, 214, 310
Hpy166II	GTNNAC	3 cut(s)	64, 164, 273
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	3 cut(s)	197, 249, 368
Hpy8I	GTNNAC	3 cut(s)	64, 164, 273
Hpy99I	CGWCG	6 cut(s)	50, 53, 56, 277, 308, 311
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	2 cut(s)	66, 267
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 100, 337, 346
HpySE526I	ACGT	2 cut(s)	66, 267
Hsp92II	CATG	1 cut(s)	200
HspAI	GCGC	1 cut(s)	258
Kpn2I	TCCGGA	1 cut(s)	367
Kzo9I	GATC	5 cut(s)	131, 190, 245, 300, 316
LmnI	GCTCC	4 cut(s)	81, 226, 280, 328
LpnPI	CCDG	6 cut(s)	95, 108, 126, 172, 215, 363
Lsp1109I	GCAGC	2 cut(s)	100, 103
LweI	GCATC	1 cut(s)	340
MaeII	ACGT	2 cut(s)	66, 267
MalI	GATC	5 cut(s)	133, 192, 247, 302, 318
MboI	GATC	5 cut(s)	131, 190, 245, 300, 316
MboII	GAAGA	5 cut(s)	126, 129, 180, 217, 245
MflI	RGATCY	1 cut(s)	131
MluCI	AATT	1 cut(s)	125
MroI	TCCGGA	1 cut(s)	367
MspI	CCGG	2 cut(s)	95, 368
MwoI	GCNNNNNNNGC	4 cut(s)	38, 100, 337, 346
NdeII	GATC	5 cut(s)	131, 190, 245, 300, 316
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	145
PagI	TCATGA	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PkrI	GCNGC	3 cut(s)	90, 93, 257
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	131
SalI	GTCGAC	1 cut(s)	271
SatI	GCNGC	3 cut(s)	89, 92, 256
Sau3AI	GATC	5 cut(s)	131, 190, 245, 300, 316
Sau96I	GGNCC	1 cut(s)	39
SetI	ASST	9 cut(s)	69, 78, 111, 123, 145, 204, 231, 270, 375
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	160
SfiI	GGCCNNNNNGGCC	1 cut(s)	346
Sse9I	AATT	1 cut(s)	125
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	3 cut(s)	32, 183, 255
StuI	AGGCCT	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	2 cut(s)	69, 270
TaqI	TCGA	3 cut(s)	272, 303, 375
TaqII	GACCGA	1 cut(s)	187
TasI	AATT	1 cut(s)	125
TauI	GCSGC	1 cut(s)	258
TseI	GCWGC	2 cut(s)	88, 91
XmiI	GTMKAC	2 cut(s)	163, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.