Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003392

Physical Location & Seq

Genomic Coordinates Reverse (-)

46485908 .. 46486321

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1345200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGGAAATTGTTTGAGGTGTGATTCCGCGATGGTATGGGCCGGAGACGACAACTGGATTGACGTTTCTCAGCGTCAGCCTAATGATAAAAGTGCACACAACCCAGAAAAACATAGGCTTCTTGCTGAGTTAAGATCATATTCATCATCTGGAGCTTCAACATCTTCATTTTCTACAAGTACTAGTAGTATTGGAGGAGATCAAGTGAAGATCAAGATTAGTAAGAAAGAGCTGGAGGAGTTGGTGGTTAAAGGAGGAGGAAACATGCAGGGTCTTTCGTCTGTGGAACAGCTATTAACTTGGGTCATGATCAACGGCCGTGATGGTCATGATCTGTACTATGATGGTCGTGATGAGATGAACCGTCAACGGCCCTGGAGGCCTGTTCTCCAAAGTATTCCGGAAGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.28

Weight (kDa)

5.89

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21920
fragaria_vesca	FvH4_3g02220 FvH4_3g22640
malus_domestica	MD05G1345200.v1.1 MD10G1320500.v1.1 MD11G1218800.v1.1
prunus_persica	Prupe.4G021600_v2.0.a1 Prupe.4G212400_v2.0.a1
pyrus_communis	pycom03g15280 pycom05g31410 pycom10g27120 pycom11g19280
rosa_chinensis	RchiOBHm_Chr5g0003291 RchiOBHm_Chr5g0039411
rosa_laevigata	RLG00000031122 RLG00000033912
rosa_multiflora	Rmu_co8348757.1_g000001 Rmu_sc0004395.1_g000009 Rmu_sc0007310.1_g000001 Rmu_sc0010917.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040540 Rroxscaffold_1G00072670
rosa_rugosa	Rorug04G0402500 Rorug05G0179000
rosa_samantha	Rh5AG028600 Rh5AG265600 Rh5BG028700 Rh5BG270000 Rh5CG031000 Rh5CG303100 Rh5DG029200 Rh5DG278100
rosa_wichuraiana	Rw0G014060 Rw5G002660 Rw5G002710 Rw5G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	316
AfaI	GTAC	2 cut(s)	181, 338
AgsI	TTSAA	1 cut(s)	159
AhlI	ACTAGT	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	3 cut(s)	155, 232, 292
AluI	AGCT	3 cut(s)	155, 232, 292
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	39
Alw44I	GTGCAC	1 cut(s)	93
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	4 cut(s)	39, 316, 371, 380
ApaLI	GTGCAC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	39, 372
BaeGI	GKGCMC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	97
BccI	CCATC	3 cut(s)	25, 317, 338
BceAI	ACGGC	3 cut(s)	303, 331, 386
BciT130I	CCWGG	1 cut(s)	376
BclI	TGATCA	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	39
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	1 cut(s)	183
BglI	GCCNNNNNGGC	1 cut(s)	379
BmcAI	AGTACT	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	376
BmgT120I	GGNCC	2 cut(s)	39, 372
BmrFI	CCNGG	1 cut(s)	376
BpmI	CTGGAG	3 cut(s)	171, 254, 397
BsaJI	CCNNGG	1 cut(s)	374
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bse1I	ACTGG	1 cut(s)	59
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	374
BseMII	CTCAG	2 cut(s)	83, 117
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	3 cut(s)	210, 251, 270
BseSI	GKGCMC	1 cut(s)	97
BseX3I	CGGCCG	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	4 cut(s)	41, 318, 373, 382
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	42, 401
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
BsnI	GGCC	4 cut(s)	41, 318, 373, 382
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp13I	TCCGGA	1 cut(s)	400
Bsp143I	GATC	5 cut(s)	134, 199, 210, 309, 331
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	4 cut(s)	41, 318, 373, 382
BspCNI	CTCAG	2 cut(s)	82, 118
BspEI	TCCGGA	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	29
BspHI	TCATGA	2 cut(s)	306, 328
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	5 cut(s)	134, 199, 210, 309, 331
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	1 cut(s)	365
BstDEI	CTNAG	2 cut(s)	69, 126
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	5 cut(s)	137, 202, 213, 312, 334
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	5 cut(s)	134, 199, 210, 309, 331
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstNI	CCWGG	1 cut(s)	376
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	374
BstSLI	GKGCMC	1 cut(s)	97
BstUI	CGCG	1 cut(s)	29
BstZI	CGGCCG	1 cut(s)	316
BsuRI	GGCC	4 cut(s)	41, 318, 373, 382
BtgZI	GCGATG	1 cut(s)	44
CciI	TCATGA	2 cut(s)	306, 328
Cfr13I	GGNCC	2 cut(s)	39, 372
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	180, 337
CviAII	CATG	3 cut(s)	265, 307, 329
CviJI	RGCY	9 cut(s)	41, 79, 118, 155, 232, 292, 318, 373, 382
CviKI_1	RGCY	9 cut(s)	41, 79, 118, 155, 232, 292, 318, 373, 382
CviQI	GTAC	2 cut(s)	180, 337
DdeI	CTNAG	2 cut(s)	69, 126
DpnI	GATC	5 cut(s)	136, 201, 212, 311, 333
DpnII	GATC	5 cut(s)	134, 199, 210, 309, 331
EaeI	YGGCCR	1 cut(s)	316
EagI	CGGCCG	1 cut(s)	316
EclXI	CGGCCG	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	382
Eco52I	CGGCCG	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	374
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	3 cut(s)	268, 310, 332
FaiI	YATR	7 cut(s)	37, 114, 139, 266, 308, 330, 342
FatI	CATG	3 cut(s)	264, 306, 328
FbaI	TGATCA	1 cut(s)	309
FspBI	CTAG	1 cut(s)	183
GsuI	CTGGAG	3 cut(s)	171, 254, 397
HaeIII	GGCC	4 cut(s)	41, 318, 373, 382
HapII	CCGG	2 cut(s)	42, 401
HgaI	GACGC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	268, 310, 332
HincII	GTYRAC	1 cut(s)	368
HindII	GTYRAC	1 cut(s)	368
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	42, 401
Hpy166II	GTNNAC	2 cut(s)	95, 368
Hpy188III	TCNNGA	6 cut(s)	150, 214, 307, 329, 350, 401
Hpy8I	GTNNAC	2 cut(s)	95, 368
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	95, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	2 cut(s)	69, 126
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	268, 310, 332
Kpn2I	TCCGGA	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	5 cut(s)	134, 199, 210, 309, 331
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	9 cut(s)	40, 55, 117, 135, 218, 254, 361, 388, 396
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	63
MalI	GATC	5 cut(s)	136, 201, 212, 311, 333
MboI	GATC	5 cut(s)	134, 199, 210, 309, 331
MboII	GAAGA	2 cut(s)	156, 220
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	2 cut(s)	7, 409
MnlI	CCTC	6 cut(s)	9, 188, 229, 248, 251, 372
MroI	TCCGGA	1 cut(s)	400
MseI	TTAA	5 cut(s)	131, 249, 296, 408, 412
MspI	CCGG	2 cut(s)	42, 401
MspR9I	CCNGG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	376
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	379
NdeII	GATC	5 cut(s)	134, 199, 210, 309, 331
NlaIII	CATG	3 cut(s)	268, 310, 332
NspI	RCATGY	1 cut(s)	268
PacI	TTAATTAA	1 cut(s)	412
PagI	TCATGA	2 cut(s)	306, 328
PceI	AGGCCT	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspPI	GGNCC	2 cut(s)	39, 372
RsaI	GTAC	2 cut(s)	181, 338
RsaNI	GTAC	2 cut(s)	180, 337
SaqAI	TTAA	5 cut(s)	131, 249, 296, 408, 412
Sau3AI	GATC	5 cut(s)	134, 199, 210, 309, 331
Sau96I	GGNCC	2 cut(s)	39, 372
ScaI	AGTACT	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	5 cut(s)	20, 66, 157, 234, 294
SfiI	GGCCNNNNNGGCC	1 cut(s)	379
SpeI	ACTAGT	1 cut(s)	182
Sse9I	AATT	2 cut(s)	7, 409
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	1 cut(s)	66
TasI	AATT	2 cut(s)	7, 409
TatI	WGTACW	2 cut(s)	179, 336
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	5 cut(s)	131, 249, 296, 408, 412
Tru9I	TTAA	5 cut(s)	131, 249, 296, 408, 412
TspDTI	ATGAA	3 cut(s)	132, 156, 374
VneI	GTGCAC	1 cut(s)	93
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	1 cut(s)	183
ZrmI	AGTACT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.