Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003392

Physical Location & Seq

Genomic Coordinates Reverse (-)

28186742 .. 28187092

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGAAACTGTTTGAGACGCGATTCCGCGACGGTATGGGCCGGAGACGACGACTGGATTGATGTTTCTCAGCTTGAGCCTGATGCTAAAATGGCACACAACCCAGAAAGGCATAGGCTTCTTGGCGAGATAAGATCATATTCATCATCTGCAGCCTCAACACCTTCATTTTCTACTAGCACTAGTAGTACTGGAGGAGATCAAGTGAAGATCAAGATGACTAAGAAGGAGCTGGAGGAGTTGGTAAAAGGAGGAGGAAACATGCAGGGTCTGTCGTCTGTGGAACAGCTATTGGCTCGGCTCGGGATCAACGGCCTTGACGATCATGATCAGTACTATGATCGATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.72

Weight (kDa)

5.07

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21920
fragaria_vesca	FvH4_3g02220 FvH4_3g22640
malus_domestica	MD05G1345200.v1.1 MD10G1320500.v1.1 MD11G1218800.v1.1
prunus_persica	Prupe.4G021600_v2.0.a1 Prupe.4G212400_v2.0.a1
pyrus_communis	pycom03g15280 pycom05g31410 pycom10g27120 pycom11g19280
rosa_chinensis	RchiOBHm_Chr5g0003291 RchiOBHm_Chr5g0039411
rosa_laevigata	RLG00000031122 RLG00000033912
rosa_multiflora	Rmu_co8348757.1_g000001 Rmu_sc0004395.1_g000009 Rmu_sc0007310.1_g000001 Rmu_sc0010917.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040540 Rroxscaffold_1G00072670
rosa_rugosa	Rorug04G0402500 Rorug05G0179000
rosa_samantha	Rh5AG028600 Rh5AG265600 Rh5BG028700 Rh5BG270000 Rh5CG031000 Rh5CG303100 Rh5DG029200 Rh5DG278100
rosa_wichuraiana	Rw0G014060 Rw5G002660 Rw5G002710 Rw5G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	21, 29
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	1 cut(s)	314
AfaI	GTAC	2 cut(s)	190, 335
AhlI	ACTAGT	1 cut(s)	182
AluBI	AGCT	3 cut(s)	73, 232, 289
AluI	AGCT	3 cut(s)	73, 232, 289
Alw26I	GTCTC	2 cut(s)	10, 39
AlwI	GGATC	1 cut(s)	314
AlwNI	CAGNNNCTG	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	39, 313
ApeKI	GCWGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	328
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	10, 39
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	2 cut(s)	177, 183
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmcAI	AGTACT	2 cut(s)	190, 335
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	39
BmsI	GCATC	1 cut(s)	73
BpmI	CTGGAG	2 cut(s)	213, 254
BpuEI	CTTGAG	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	343
BsaBI	GATNNNNATC	1 cut(s)	327
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bse1I	ACTGG	2 cut(s)	59, 196
Bse8I	GATNNNNATC	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	343
BseJI	GATNNNNATC	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	59, 196
BseRI	GAGGAG	3 cut(s)	210, 251, 267
BseXI	GCAGC	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	21, 29
Bsh1285I	CGRYCG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	41, 315
BshVI	ATCGAT	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	347
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	42
BsmAI	GTCTC	2 cut(s)	10, 39
BsmBI	CGTCTC	2 cut(s)	10, 39
BsnI	GGCC	2 cut(s)	41, 315
BsoBI	CYCGRG	1 cut(s)	302
Bsp143I	GATC	8 cut(s)	134, 199, 210, 306, 322, 328, 340, 344
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	2 cut(s)	41, 315
BspCNI	CTCAG	1 cut(s)	82
BspDI	ATCGAT	1 cut(s)	343
BspFNI	CGCG	2 cut(s)	21, 29
BspHI	TCATGA	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	59, 196
BssMI	GATC	8 cut(s)	134, 199, 210, 306, 322, 328, 340, 344
Bst4CI	ACNGT	2 cut(s)	11, 34
BstDEI	CTNAG	2 cut(s)	69, 222
BstFNI	CGCG	2 cut(s)	21, 29
BstKTI	GATC	8 cut(s)	137, 202, 213, 309, 325, 331, 343, 347
BstMAI	GTCTC	2 cut(s)	10, 39
BstMBI	GATC	8 cut(s)	134, 199, 210, 306, 322, 328, 340, 344
BstMCI	CGRYCG	1 cut(s)	347
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	150
BstUI	CGCG	2 cut(s)	21, 29
BstV1I	GCAGC	1 cut(s)	164
Bsu15I	ATCGAT	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	41, 315
BsuTUI	ATCGAT	1 cut(s)	343
CaiI	CAGNNNCTG	1 cut(s)	271
CciI	TCATGA	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	343
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	189, 334
CviAII	CATG	2 cut(s)	262, 326
CviQI	GTAC	2 cut(s)	189, 334
DdeI	CTNAG	2 cut(s)	69, 222
DpnI	GATC	8 cut(s)	136, 201, 212, 308, 324, 330, 342, 346
DpnII	GATC	8 cut(s)	134, 199, 210, 306, 322, 328, 340, 344
Eco88I	CYCGRG	1 cut(s)	302
Esp3I	CGTCTC	2 cut(s)	10, 39
FaeI	CATG	2 cut(s)	265, 329
FaiI	YATR	6 cut(s)	37, 114, 139, 263, 327, 339
FatI	CATG	2 cut(s)	261, 325
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	2 cut(s)	177, 183
GluI	GCNGC	1 cut(s)	153
GsuI	CTGGAG	2 cut(s)	213, 254
HaeIII	GGCC	2 cut(s)	41, 315
HapII	CCGG	1 cut(s)	42
HgaI	GACGC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	265, 329
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	1 cut(s)	42
Hpy188III	TCNNGA	4 cut(s)	214, 304, 326, 348
Hpy99I	CGWCG	2 cut(s)	34, 53
HpyAV	CCTTC	2 cut(s)	174, 220
HpyCH4III	ACNGT	2 cut(s)	11, 34
HpyCH4V	TGCA	2 cut(s)	152, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	69, 222
Hsp92II	CATG	2 cut(s)	265, 329
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	8 cut(s)	134, 199, 210, 306, 322, 328, 340, 344
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	7 cut(s)	40, 55, 93, 117, 177, 218, 251
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	2 cut(s)	177, 183
MalI	GATC	8 cut(s)	136, 201, 212, 308, 324, 330, 342, 346
MboI	GATC	8 cut(s)	134, 199, 210, 306, 322, 328, 340, 344
MboII	GAAGA	1 cut(s)	220
MnlI	CCTC	5 cut(s)	166, 188, 229, 245, 248
MspI	CCGG	1 cut(s)	42
MvnI	CGCG	2 cut(s)	21, 29
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	8 cut(s)	134, 199, 210, 306, 322, 328, 340, 344
NlaIII	CATG	2 cut(s)	265, 329
NmeAIII	GCCGAG	1 cut(s)	277
NspI	RCATGY	1 cut(s)	265
PagI	TCATGA	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	154
Ple19I	CGATCG	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	271
PvuI	CGATCG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	190, 335
RsaNI	GTAC	2 cut(s)	189, 334
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	8 cut(s)	134, 199, 210, 306, 322, 328, 340, 344
Sau96I	GGNCC	1 cut(s)	39
ScaI	AGTACT	2 cut(s)	190, 335
SetI	ASST	4 cut(s)	75, 166, 234, 291
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SpeI	ACTAGT	1 cut(s)	182
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	2 cut(s)	177, 183
TaaI	ACNGT	2 cut(s)	11, 34
TaqI	TCGA	1 cut(s)	343
TatI	WGTACW	2 cut(s)	188, 333
TfiI	GAWTC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	132, 156
XceI	RCATGY	1 cut(s)	265
XspI	CTAG	2 cut(s)	177, 183
ZrmI	AGTACT	2 cut(s)	190, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.