Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003392

Physical Location & Seq

Genomic Coordinates Forward (+)

1992118 .. 1992504

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG031000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGGAACTGCTGTTTGAGGCGTGATTCTGCGGTTTGGGCCAACGACGACGACGGGTGGGTCAACGTGTGTCAGCTCCACCAGTCGCAGCAGCCGGAAAAGCAGAAGCTTCTGGGTGAGGTTCAATTCAGATCTTCTTCAGGTTCCTCCTCCTCCTTCTGTAGACGAAGACCGAGTAGTAGCGGTAGAGATCATCAGGAGGTGAAGATAAAGATGACAAAGAGGGAGCTGGAAGAGTTGGTGGGATCAAGAGGCGGCGCTATGGACGTGTCGACGGTGGAGCAACTATTGGCGAGGGTGATGGACGACGGTGATGATCGGTATGACTATGAGGAGCATCAACGGCCGTGGAGGCCTGCCCTCCAAAGTATTCCGGAGGTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.61

Weight (kDa)

5.4

Isoelectric Point (pI)

73.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21920
fragaria_vesca	FvH4_3g02220 FvH4_3g22640
malus_domestica	MD05G1345200.v1.1 MD10G1320500.v1.1 MD11G1218800.v1.1
prunus_persica	Prupe.4G021600_v2.0.a1 Prupe.4G212400_v2.0.a1
pyrus_communis	pycom03g15280 pycom05g31410 pycom10g27120 pycom11g19280
rosa_chinensis	RchiOBHm_Chr5g0003291 RchiOBHm_Chr5g0039411
rosa_laevigata	RLG00000031122 RLG00000033912
rosa_multiflora	Rmu_co8348757.1_g000001 Rmu_sc0004395.1_g000009 Rmu_sc0007310.1_g000001 Rmu_sc0010917.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040540 Rroxscaffold_1G00072670
rosa_rugosa	Rorug04G0402500 Rorug05G0179000
rosa_samantha	Rh5AG028600 Rh5AG265600 Rh5BG028700 Rh5BG270000 Rh5CG031000 Rh5CG303100 Rh5DG029200 Rh5DG278100
rosa_wichuraiana	Rw0G014060 Rw5G002660 Rw5G002710 Rw5G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccI	GTMKAC	2 cut(s)	163, 272
AccIII	TCCGGA	1 cut(s)	373
AciI	CCGC	3 cut(s)	32, 183, 255
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	123
AflIII	ACRYGT	2 cut(s)	66, 267
AgsI	TTSAA	1 cut(s)	125
AjiI	CACGTC	1 cut(s)	268
AluBI	AGCT	3 cut(s)	76, 109, 229
AluI	AGCT	3 cut(s)	76, 109, 229
AlwI	GGATC	1 cut(s)	253
Aor13HI	TCCGGA	1 cut(s)	373
AoxI	GGCC	3 cut(s)	39, 344, 353
ApeKI	GCWGC	2 cut(s)	88, 91
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	4 cut(s)	128, 214, 310, 323
BbsI	GAAGAC	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	100, 103
BccI	CCATC	1 cut(s)	295
BceAI	ACGGC	2 cut(s)	331, 359
BfmI	CTRYAG	1 cut(s)	160
BfoI	RGCGCY	1 cut(s)	261
BglI	GCCNNNNNGGC	1 cut(s)	352
BglII	AGATCT	1 cut(s)	131
BisI	GCNGC	3 cut(s)	89, 92, 256
BlsI	GCNGC	3 cut(s)	90, 93, 257
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	145
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	82
BseAI	TCCGGA	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	347
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	3 cut(s)	139, 142, 347
BseX3I	CGGCCG	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	100, 103
Bsh1285I	CGRYCG	1 cut(s)	347
BshFI	GGCC	3 cut(s)	41, 346, 355
BsiEI	CGRYCG	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	95, 374
BsnI	GGCC	3 cut(s)	41, 346, 355
Bsp13I	TCCGGA	1 cut(s)	373
Bsp143I	GATC	4 cut(s)	131, 190, 245, 316
BspACI	CCGC	3 cut(s)	32, 183, 255
BspANI	GGCC	3 cut(s)	41, 346, 355
BspEI	TCCGGA	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	4 cut(s)	131, 190, 245, 316
Bst4CI	ACNGT	2 cut(s)	277, 311
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	347
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	4 cut(s)	134, 193, 248, 319
BstMBI	GATC	4 cut(s)	131, 190, 245, 316
BstMCI	CGRYCG	1 cut(s)	347
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 100, 343, 352
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	100, 103
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BstZI	CGGCCG	1 cut(s)	344
BsuRI	GGCC	3 cut(s)	41, 346, 355
BtgI	CCRYGG	1 cut(s)	347
BtrI	CACGTC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	39
CspCI	CAANNNNNGTGG	2 cut(s)	329, 364
CviJI	RGCY	7 cut(s)	41, 76, 94, 109, 229, 346, 355
CviKI_1	RGCY	7 cut(s)	41, 76, 94, 109, 229, 346, 355
DpnI	GATC	4 cut(s)	133, 192, 247, 318
DpnII	GATC	4 cut(s)	131, 190, 245, 316
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	344
EagI	CGGCCG	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EclXI	CGGCCG	1 cut(s)	344
Eco147I	AGGCCT	1 cut(s)	355
Eco52I	CGGCCG	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	123
FaiI	YATR	3 cut(s)	263, 324, 330
FblI	GTMKAC	2 cut(s)	163, 272
Fnu4HI	GCNGC	3 cut(s)	89, 92, 256
Fsp4HI	GCNGC	3 cut(s)	89, 92, 256
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	3 cut(s)	89, 92, 256
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	41, 346, 355
HapII	CCGG	2 cut(s)	95, 374
HhaI	GCGC	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	2 cut(s)	64, 273
HindII	GTYRAC	2 cut(s)	64, 273
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	2 cut(s)	95, 374
HphI	GGTGA	4 cut(s)	128, 214, 310, 323
Hpy166II	GTNNAC	3 cut(s)	64, 164, 273
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	3 cut(s)	197, 249, 374
Hpy8I	GTNNAC	3 cut(s)	64, 164, 273
Hpy99I	CGWCG	5 cut(s)	50, 53, 56, 277, 311
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	277, 311
HpyCH4IV	ACGT	2 cut(s)	66, 267
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 100, 343, 352
HpySE526I	ACGT	2 cut(s)	66, 267
HspAI	GCGC	1 cut(s)	258
Kpn2I	TCCGGA	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	131, 190, 245, 316
LmnI	GCTCC	4 cut(s)	81, 226, 280, 334
LpnPI	CCDG	7 cut(s)	95, 98, 108, 126, 182, 215, 369
Lsp1109I	GCAGC	2 cut(s)	100, 103
LweI	GCATC	1 cut(s)	346
MaeII	ACGT	2 cut(s)	66, 267
MalI	GATC	4 cut(s)	133, 192, 247, 318
MboI	GATC	4 cut(s)	131, 190, 245, 316
MboII	GAAGA	5 cut(s)	126, 129, 180, 217, 245
MflI	RGATCY	1 cut(s)	131
MluCI	AATT	1 cut(s)	125
MroI	TCCGGA	1 cut(s)	373
MspI	CCGG	2 cut(s)	95, 374
MwoI	GCNNNNNNNGC	4 cut(s)	38, 100, 343, 352
NdeII	GATC	4 cut(s)	131, 190, 245, 316
NlaIV	GGNNCC	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	90, 93, 257
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	131
SalI	GTCGAC	1 cut(s)	271
SatI	GCNGC	3 cut(s)	89, 92, 256
Sau3AI	GATC	4 cut(s)	131, 190, 245, 316
Sau96I	GGNCC	1 cut(s)	39
SetI	ASST	9 cut(s)	69, 78, 111, 123, 145, 204, 231, 270, 381
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	160
SfiI	GGCCNNNNNGGCC	1 cut(s)	352
Sse9I	AATT	1 cut(s)	125
SseBI	AGGCCT	1 cut(s)	355
SsiI	CCGC	3 cut(s)	32, 183, 255
StuI	AGGCCT	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	277, 311
TaiI	ACGT	2 cut(s)	69, 270
TaqI	TCGA	2 cut(s)	272, 381
TaqII	GACCGA	1 cut(s)	187
TasI	AATT	1 cut(s)	125
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	26
TseI	GCWGC	2 cut(s)	88, 91
XmiI	GTMKAC	2 cut(s)	163, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.