Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003392

Physical Location & Seq

Genomic Coordinates Reverse (-)

34965854 .. 34966267

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG265600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGGGAATTGTATAAGGCACGATAAATCGTCGTCGGTGAATTGGGGAGGTGAGGAGTGGGGGTCTCTGGCAAATGATGATCGAGATCACAAGCATATGCGGAAGACGAAGAAGATAGAAGAAGAAGAAGAAGGAGAAGAGGGGCTTCTTGGAGGTGAAGATGGTAAATTTGGTTCTTACGATTCTTCGGAGACGAAAGTTCCACCACCAGCAGGAGCTACAGAAGTGAAGATAAAGATGACTAAGAAGCAGCTGGAGGAGTTGATGGGTAGGGTGGAGCTGAAGCAAATGACTGTGCAGCAGGTTTTGGCACAGTTGATCATGAGCGTCAGTAGTAATGATAGTGATCCATACGAGACTGGTCATCAACGGCCGTGGAGGCCTGTCCTTCAGAGCATTCCCGAGGTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.38

Weight (kDa)

5.14

Isoelectric Point (pI)

61.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21920
fragaria_vesca	FvH4_3g02220 FvH4_3g22640
malus_domestica	MD05G1345200.v1.1 MD10G1320500.v1.1 MD11G1218800.v1.1
prunus_persica	Prupe.4G021600_v2.0.a1 Prupe.4G212400_v2.0.a1
pyrus_communis	pycom03g15280 pycom05g31410 pycom10g27120 pycom11g19280
rosa_chinensis	RchiOBHm_Chr5g0003291 RchiOBHm_Chr5g0039411
rosa_laevigata	RLG00000031122 RLG00000033912
rosa_multiflora	Rmu_co8348757.1_g000001 Rmu_sc0004395.1_g000009 Rmu_sc0007310.1_g000001 Rmu_sc0010917.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040540 Rroxscaffold_1G00072670
rosa_rugosa	Rorug04G0402500 Rorug05G0179000
rosa_samantha	Rh5AG028600 Rh5AG265600 Rh5BG028700 Rh5BG270000 Rh5CG031000 Rh5CG303100 Rh5DG029200 Rh5DG278100
rosa_wichuraiana	Rw0G014060 Rw5G002660 Rw5G002710 Rw5G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	2 cut(s)	302, 374
AfiI	CCNNNNNNNGG	1 cut(s)	212
AluBI	AGCT	3 cut(s)	218, 253, 280
AluI	AGCT	3 cut(s)	218, 253, 280
Alw26I	GTCTC	3 cut(s)	69, 185, 350
AlwI	GGATC	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	2 cut(s)	371, 380
ApeKI	GCWGC	2 cut(s)	250, 298
ApoI	RAATTY	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	49, 62, 167
AvaI	CYCGRG	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	262, 310
BccI	CCATC	2 cut(s)	155, 259
BceAI	ACGGC	2 cut(s)	358, 386
BclI	TGATCA	1 cut(s)	318
BcoDI	GTCTC	3 cut(s)	69, 185, 350
BfmI	CTRYAG	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	292
BglI	GCCNNNNNGGC	1 cut(s)	379
BisI	GCNGC	2 cut(s)	251, 299
BlsI	GCNGC	2 cut(s)	252, 300
BmeT110I	CYCGRG	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	275
BsaBI	GATNNNNATC	2 cut(s)	84, 345
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	374, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	364
Bse8I	GATNNNNATC	2 cut(s)	84, 345
BseDI	CCNNGG	2 cut(s)	374, 402
BseJI	GATNNNNATC	2 cut(s)	84, 345
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	2 cut(s)	68, 272
BseX3I	CGGCCG	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	262, 310
BsgI	GTGCAG	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	374
BshFI	GGCC	2 cut(s)	373, 382
BsiEI	CGRYCG	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	3 cut(s)	69, 185, 350
BsmBI	CGTCTC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	2 cut(s)	373, 382
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	401
Bsp143I	GATC	4 cut(s)	79, 85, 318, 346
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	2 cut(s)	373, 382
BspHI	TCATGA	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	374, 402
BssMI	GATC	4 cut(s)	79, 85, 318, 346
Bst4CI	ACNGT	2 cut(s)	295, 315
Bst6I	CTCTTC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	374
BstKTI	GATC	4 cut(s)	82, 88, 321, 349
BstMAI	GTCTC	3 cut(s)	69, 185, 350
BstMBI	GATC	4 cut(s)	79, 85, 318, 346
BstMCI	CGRYCG	1 cut(s)	374
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	262, 310
BstV2I	GAAGAC	1 cut(s)	110
BstZI	CGGCCG	1 cut(s)	371
BsuRI	GGCC	2 cut(s)	373, 382
BtgI	CCRYGG	1 cut(s)	374
BveI	ACCTGC	1 cut(s)	292
CciI	TCATGA	1 cut(s)	321
CseI	GACGC	1 cut(s)	316
CspCI	CAANNNNNGTGG	2 cut(s)	356, 391
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	6 cut(s)	145, 218, 253, 280, 373, 382
CviKI_1	RGCY	6 cut(s)	145, 218, 253, 280, 373, 382
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	4 cut(s)	81, 87, 320, 348
DpnII	GATC	4 cut(s)	79, 85, 318, 346
EaeI	YGGCCR	1 cut(s)	371
EagI	CGGCCG	1 cut(s)	371
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
EclXI	CGGCCG	1 cut(s)	371
Eco147I	AGGCCT	1 cut(s)	382
Eco31I	GGTCTC	1 cut(s)	69
Eco52I	CGGCCG	1 cut(s)	371
Eco57I	CTGAAG	2 cut(s)	302, 374
Eco88I	CYCGRG	1 cut(s)	401
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	1 cut(s)	325
FaiI	YATR	5 cut(s)	14, 96, 98, 323, 352
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	1 cut(s)	321
FauNDI	CATATG	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	251, 299
Fsp4HI	GCNGC	2 cut(s)	251, 299
GluI	GCNGC	2 cut(s)	251, 299
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	373, 382
HgaI	GACGC	1 cut(s)	316
Hin1II	CATG	1 cut(s)	325
HinfI	GANTC	1 cut(s)	182
HphI	GGTGA	3 cut(s)	49, 62, 167
Hpy188I	TCNGA	2 cut(s)	190, 393
Hpy188III	TCNNGA	3 cut(s)	83, 322, 401
Hpy99I	CGWCG	2 cut(s)	34, 37
HpyAV	CCTTC	2 cut(s)	125, 398
HpyCH4III	ACNGT	2 cut(s)	295, 315
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	4 cut(s)	79, 85, 318, 346
LmnI	GCTCC	2 cut(s)	215, 277
LpnPI	CCDG	7 cut(s)	53, 198, 222, 239, 287, 345, 396
Lsp1109I	GCAGC	2 cut(s)	262, 310
MalI	GATC	4 cut(s)	81, 87, 320, 348
MboI	GATC	4 cut(s)	79, 85, 318, 346
MfeI	CAATTG	1 cut(s)	409
MluCI	AATT	4 cut(s)	7, 40, 167, 409
MnlI	CCTC	7 cut(s)	41, 46, 133, 146, 250, 372, 397
MspA1I	CMGCKG	1 cut(s)	253
MunI	CAATTG	1 cut(s)	409
Mva1269I	GAATGC	1 cut(s)	396
MwoI	GCNNNNNNNGC	1 cut(s)	379
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	4 cut(s)	79, 85, 318, 346
NlaIII	CATG	1 cut(s)	325
PagI	TCATGA	1 cut(s)	321
PceI	AGGCCT	1 cut(s)	382
PctI	GAATGC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	252, 300
PsrI	GAACNNNNNNTAC	2 cut(s)	157, 189
PvuII	CAGCTG	1 cut(s)	253
SatI	GCNGC	2 cut(s)	251, 299
Sau3AI	GATC	4 cut(s)	79, 85, 318, 346
SetI	ASST	7 cut(s)	52, 157, 220, 255, 282, 306, 408
SfcI	CTRYAG	1 cut(s)	219
SfiI	GGCCNNNNNGGCC	1 cut(s)	379
Sse9I	AATT	4 cut(s)	7, 40, 167, 409
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	1 cut(s)	100
StuI	AGGCCT	1 cut(s)	382
TaaI	ACNGT	2 cut(s)	295, 315
TaqI	TCGA	1 cut(s)	82
TasI	AATT	4 cut(s)	7, 40, 167, 409
TfiI	GAWTC	1 cut(s)	182
TseI	GCWGC	2 cut(s)	250, 298
XapI	RAATTY	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.