Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003392

Physical Location & Seq

Genomic Coordinates Reverse (-)

35299106 .. 35299682

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G024890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGGAATTGTATAAGGCACGATAAATCGTCGTCGGAGAATTGGGGAGGTGAGGAGTGGGGGTCTCTGGCAAATGATGATCGAGATCACAAGCATATGCGGAAGACGAAGAAGATAGAAGAAGGAGAAGAGGGGCTTCTTGGAGGTGAAGATGGTAAATTTGGTTCTTACGATTCTTCGGAGACGAGAGTTCCACCACCAGCAGGAGCTACAGAAGTGAAGATAAAGATGACTAAGAAGCAGCTGGAGGAGTTGATGGGTAGGGTGGAGCTGAAGCAAATGACTGTGCAGCAGGTTTTGGCACAGTTGATCATGAGCGTCAGTAGTAATGATAGTGATCCATACGAGACTGATCATCAACGGCCGTGGAGGCCTGTCCTTCAGAGCATTCCCGAGGTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

5.24

Isoelectric Point (pI)

58.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21920
fragaria_vesca	FvH4_3g02220 FvH4_3g22640
malus_domestica	MD05G1345200.v1.1 MD10G1320500.v1.1 MD11G1218800.v1.1
prunus_persica	Prupe.4G021600_v2.0.a1 Prupe.4G212400_v2.0.a1
pyrus_communis	pycom03g15280 pycom05g31410 pycom10g27120 pycom11g19280
rosa_chinensis	RchiOBHm_Chr5g0003291 RchiOBHm_Chr5g0039411
rosa_laevigata	RLG00000031122 RLG00000033912
rosa_multiflora	Rmu_co8348757.1_g000001 Rmu_sc0004395.1_g000009 Rmu_sc0007310.1_g000001 Rmu_sc0010917.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040540 Rroxscaffold_1G00072670
rosa_rugosa	Rorug04G0402500 Rorug05G0179000
rosa_samantha	Rh5AG028600 Rh5AG265600 Rh5BG028700 Rh5BG270000 Rh5CG031000 Rh5CG303100 Rh5DG029200 Rh5DG278100
rosa_wichuraiana	Rw0G014060 Rw5G002660 Rw5G002710 Rw5G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	283
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	2 cut(s)	293, 365
AfiI	CCNNNNNNNGG	1 cut(s)	203
AluBI	AGCT	3 cut(s)	209, 244, 271
AluI	AGCT	3 cut(s)	209, 244, 271
Alw26I	GTCTC	3 cut(s)	69, 176, 341
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	362, 371
ApeKI	GCWGC	2 cut(s)	241, 289
ApoI	RAATTY	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	62, 158
AvaI	CYCGRG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	253, 301
BccI	CCATC	2 cut(s)	146, 250
BceAI	ACGGC	2 cut(s)	349, 377
BclI	TGATCA	2 cut(s)	309, 352
BcoDI	GTCTC	3 cut(s)	69, 176, 341
BfmI	CTRYAG	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	283
BglI	GCCNNNNNGGC	1 cut(s)	370
BisI	GCNGC	2 cut(s)	242, 290
BlsI	GCNGC	2 cut(s)	243, 291
BmeT110I	CYCGRG	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	266
BsaBI	GATNNNNATC	2 cut(s)	84, 336
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	365, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse8I	GATNNNNATC	2 cut(s)	84, 336
BseDI	CCNNGG	2 cut(s)	365, 393
BseJI	GATNNNNATC	2 cut(s)	84, 336
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseRI	GAGGAG	2 cut(s)	68, 263
BseX3I	CGGCCG	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	253, 301
BsgI	GTGCAG	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	365
BshFI	GGCC	2 cut(s)	364, 373
BsiEI	CGRYCG	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	3 cut(s)	69, 176, 341
BsmBI	CGTCTC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	364, 373
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	392
Bsp143I	GATC	5 cut(s)	79, 85, 309, 337, 352
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	2 cut(s)	364, 373
BspHI	TCATGA	1 cut(s)	312
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	365, 393
BssMI	GATC	5 cut(s)	79, 85, 309, 337, 352
Bst4CI	ACNGT	2 cut(s)	286, 306
Bst6I	CTCTTC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	365
BstKTI	GATC	5 cut(s)	82, 88, 312, 340, 355
BstMAI	GTCTC	3 cut(s)	69, 176, 341
BstMBI	GATC	5 cut(s)	79, 85, 309, 337, 352
BstMCI	CGRYCG	1 cut(s)	365
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	253, 301
BstV2I	GAAGAC	1 cut(s)	110
BstZI	CGGCCG	1 cut(s)	362
BsuRI	GGCC	2 cut(s)	364, 373
BtgI	CCRYGG	1 cut(s)	365
BveI	ACCTGC	1 cut(s)	283
CciI	TCATGA	1 cut(s)	312
CseI	GACGC	1 cut(s)	307
CspCI	CAANNNNNGTGG	2 cut(s)	347, 382
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	6 cut(s)	136, 209, 244, 271, 364, 373
CviKI_1	RGCY	6 cut(s)	136, 209, 244, 271, 364, 373
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	5 cut(s)	81, 87, 311, 339, 354
DpnII	GATC	5 cut(s)	79, 85, 309, 337, 352
EaeI	YGGCCR	1 cut(s)	362
EagI	CGGCCG	1 cut(s)	362
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EclXI	CGGCCG	1 cut(s)	362
Eco147I	AGGCCT	1 cut(s)	373
Eco31I	GGTCTC	1 cut(s)	69
Eco52I	CGGCCG	1 cut(s)	362
Eco57I	CTGAAG	2 cut(s)	293, 365
Eco88I	CYCGRG	1 cut(s)	392
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	1 cut(s)	316
FaiI	YATR	5 cut(s)	14, 96, 98, 314, 343
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	1 cut(s)	312
FauNDI	CATATG	1 cut(s)	96
FbaI	TGATCA	2 cut(s)	309, 352
Fnu4HI	GCNGC	2 cut(s)	242, 290
Fsp4HI	GCNGC	2 cut(s)	242, 290
GluI	GCNGC	2 cut(s)	242, 290
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	364, 373
HgaI	GACGC	1 cut(s)	307
Hin1II	CATG	1 cut(s)	316
HinfI	GANTC	1 cut(s)	173
HphI	GGTGA	2 cut(s)	62, 158
Hpy188I	TCNGA	3 cut(s)	37, 181, 384
Hpy188III	TCNNGA	3 cut(s)	83, 313, 392
Hpy99I	CGWCG	2 cut(s)	34, 37
HpyAV	CCTTC	2 cut(s)	116, 389
HpyCH4III	ACNGT	2 cut(s)	286, 306
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	316
Ksp22I	TGATCA	2 cut(s)	309, 352
Kzo9I	GATC	5 cut(s)	79, 85, 309, 337, 352
LmnI	GCTCC	2 cut(s)	206, 268
LpnPI	CCDG	6 cut(s)	53, 189, 213, 230, 278, 387
Lsp1109I	GCAGC	2 cut(s)	253, 301
MalI	GATC	5 cut(s)	81, 87, 311, 339, 354
MboI	GATC	5 cut(s)	79, 85, 309, 337, 352
MboII	GAAGA	8 cut(s)	115, 121, 124, 131, 140, 161, 168, 232
MfeI	CAATTG	1 cut(s)	400
MluCI	AATT	4 cut(s)	7, 40, 158, 400
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	7 cut(s)	41, 46, 124, 137, 241, 363, 388
MspA1I	CMGCKG	1 cut(s)	244
MunI	CAATTG	1 cut(s)	400
Mva1269I	GAATGC	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	370
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	5 cut(s)	79, 85, 309, 337, 352
NlaIII	CATG	1 cut(s)	316
PagI	TCATGA	1 cut(s)	312
PceI	AGGCCT	1 cut(s)	373
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	243, 291
PsrI	GAACNNNNNNTAC	2 cut(s)	148, 180
PvuII	CAGCTG	1 cut(s)	244
SatI	GCNGC	2 cut(s)	242, 290
Sau3AI	GATC	5 cut(s)	79, 85, 309, 337, 352
SetI	ASST	7 cut(s)	52, 148, 211, 246, 273, 297, 399
SfcI	CTRYAG	1 cut(s)	210
SfiI	GGCCNNNNNGGCC	1 cut(s)	370
Sse9I	AATT	4 cut(s)	7, 40, 158, 400
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	1 cut(s)	100
StuI	AGGCCT	1 cut(s)	373
TaaI	ACNGT	2 cut(s)	286, 306
TaqI	TCGA	1 cut(s)	82
TasI	AATT	4 cut(s)	7, 40, 158, 400
TfiI	GAWTC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	241, 289
XapI	RAATTY	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.