Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003392

Physical Location & Seq

Genomic Coordinates Forward (+)

31918611 .. 31918994

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1218800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGGCATGATTCGTCCATGAAATGGGCAGGAGATGATTGGGGTTGTCTAGCAGATGGAATGAAGGGTGACGATTATCGCGATCAAACGGACGTAAAGATCATGAAGAAGAACAACAAGAAGATTGCAGAAGCAAGCCAGATGGATTCATTTTGTTCTACAACAACAGCAACAACAAGTAGTAGTAGTAAAGTTGGTGCAGCAACAGAGGTGAAGATCAAGATCACAAAGAAGCAGTTGGAGGAGTTGTTGGGTAAGGTGGAGTATAAGCAAATGTCAGCTCAGCAGGTTTTGGCTCAGCTGATTAGGGTTAGCGATGGCTTTGAGACCCAGTTGCAAAGGTCTTGGAGGCCTGCTCTTCAAAGCATTCCTGAGGTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.21

Weight (kDa)

8.53

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21920
fragaria_vesca	FvH4_3g02220 FvH4_3g22640
malus_domestica	MD05G1345200.v1.1 MD10G1320500.v1.1 MD11G1218800.v1.1
prunus_persica	Prupe.4G021600_v2.0.a1 Prupe.4G212400_v2.0.a1
pyrus_communis	pycom03g15280 pycom05g31410 pycom10g27120 pycom11g19280
rosa_chinensis	RchiOBHm_Chr5g0003291 RchiOBHm_Chr5g0039411
rosa_laevigata	RLG00000031122 RLG00000033912
rosa_multiflora	Rmu_co8348757.1_g000001 Rmu_sc0004395.1_g000009 Rmu_sc0007310.1_g000001 Rmu_sc0010917.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040540 Rroxscaffold_1G00072670
rosa_rugosa	Rorug04G0402500 Rorug05G0179000
rosa_samantha	Rh5AG028600 Rh5AG265600 Rh5BG028700 Rh5BG270000 Rh5CG031000 Rh5CG303100 Rh5DG029200 Rh5DG278100
rosa_wichuraiana	Rw0G014060 Rw5G002660 Rw5G002710 Rw5G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	24
AccII	CGCG	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	1 cut(s)	362
AluBI	AGCT	2 cut(s)	281, 301
AluI	AGCT	2 cut(s)	281, 301
Alw26I	GTCTC	1 cut(s)	320
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	80, 223
AxyI	CCTNAGG	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	3 cut(s)	50, 136, 311
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	1 cut(s)	201
BlpI	GCTNAGC	2 cut(s)	282, 297
BlsI	GCNGC	1 cut(s)	202
BmrI	ACTGGG	1 cut(s)	325
BmuI	ACTGGG	1 cut(s)	325
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
Bpu1102I	GCTNAGC	2 cut(s)	282, 297
BsaBI	GATNNNNATC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	331
Bse21I	CCTNAGG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	221
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	3 cut(s)	296, 311, 363
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	352
Bso31I	GGTCTC	1 cut(s)	320
Bsp143I	GATC	4 cut(s)	82, 99, 216, 222
Bsp1720I	GCTNAGC	2 cut(s)	282, 297
Bsp68I	TCGCGA	1 cut(s)	81
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	3 cut(s)	295, 310, 364
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	277
BspQI	GCTCTTC	1 cut(s)	363
BspTNI	GGTCTC	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	331
BssMI	GATC	4 cut(s)	82, 99, 216, 222
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	136, 354
BstDEI	CTNAG	3 cut(s)	282, 297, 372
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	4 cut(s)	85, 102, 219, 225
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	4 cut(s)	82, 99, 216, 222
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	352
BtgZI	GCGATG	1 cut(s)	330
BtuMI	TCGCGA	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	2 cut(s)	136, 354
CciI	TCATGA	1 cut(s)	102
CviAII	CATG	3 cut(s)	8, 19, 103
CviJI	RGCY	6 cut(s)	138, 281, 296, 301, 321, 352
CviKI_1	RGCY	6 cut(s)	138, 281, 296, 301, 321, 352
DdeI	CTNAG	3 cut(s)	282, 297, 372
DpnI	GATC	4 cut(s)	84, 101, 218, 224
DpnII	GATC	4 cut(s)	82, 99, 216, 222
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco147I	AGGCCT	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	320
Eco81I	CCTNAGG	1 cut(s)	372
FaeI	CATG	3 cut(s)	11, 22, 106
FaiI	YATR	4 cut(s)	9, 20, 104, 267
FatI	CATG	3 cut(s)	7, 18, 102
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	352
Hin1II	CATG	3 cut(s)	11, 22, 106
HinfI	GANTC	2 cut(s)	11, 146
HphI	GGTGA	2 cut(s)	80, 223
Hpy188III	TCNNGA	4 cut(s)	80, 103, 220, 371
HpyAV	CCTTC	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	3 cut(s)	128, 200, 337
HpyF3I	CTNAG	3 cut(s)	282, 297, 372
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	11, 22, 106
Kzo9I	GATC	4 cut(s)	82, 99, 216, 222
LguI	GCTCTTC	1 cut(s)	363
LpnPI	CCDG	5 cut(s)	15, 152, 272, 344, 366
Lsp1109I	GCAGC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	4 cut(s)	84, 101, 218, 224
MboI	GATC	4 cut(s)	82, 99, 216, 222
MboII	GAAGA	5 cut(s)	118, 121, 133, 226, 350
MluCI	AATT	1 cut(s)	379
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	4 cut(s)	202, 235, 342, 367
MseI	TTAA	1 cut(s)	382
MspA1I	CMGCKG	1 cut(s)	301
Mva1269I	GAATGC	1 cut(s)	366
MvnI	CGCG	1 cut(s)	81
NdeII	GATC	4 cut(s)	82, 99, 216, 222
NlaIII	CATG	3 cut(s)	11, 22, 106
NmuCI	GTSAC	1 cut(s)	68
NruI	TCGCGA	1 cut(s)	81
PagI	TCATGA	1 cut(s)	102
PceI	AGGCCT	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	11, 146
PflMI	CCANNNNNTGG	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	301
RruI	TCGCGA	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	382
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	4 cut(s)	82, 99, 216, 222
SetI	ASST	8 cut(s)	96, 213, 261, 283, 291, 303, 344, 378
Sse9I	AATT	1 cut(s)	379
SseBI	AGGCCT	1 cut(s)	352
SspMI	CTAG	1 cut(s)	50
StuI	AGGCCT	1 cut(s)	352
TaiI	ACGT	1 cut(s)	96
TasI	AATT	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	11, 146
Tru1I	TTAA	1 cut(s)	382
Tru9I	TTAA	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	4 cut(s)	35, 77, 119, 138
TspGWI	ACGGA	1 cut(s)	104
Van91I	CCANNNNNTGG	1 cut(s)	24
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.