Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003392

Physical Location & Seq

Genomic Coordinates Reverse (-)

33351737 .. 33352858

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG303100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGGAATTGTATAAGGCACGATAAATCGTCGTCGGTGAATTGGGGAGGTGAGGAGTGGGGGTCTCTGGCAAATGATGATCGAGATCACAAGCATATGCGGAAGACGAAGAAGATAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAGGGGCTTCTTGGAGGTGAAGATGGTAAATTTGGTTCTTACAATTCTTCGGAGACGAAAGTTCCACCACCAGCAGGAGCTACAGAAGTGAAGATAAAGATGACTAAGAAGCAGCTGGAGGAGTTGATGGGTAGGGTGGAGCTGAAGCAAATGACTGTGCAGCAGGTTTTGGCACAGTTGATCATGAGCGTCAGTAGTAATGATAGTGATCCATACGAGACTGATCATCAACGGCCTTGGAGGCCTGTCCTTCAGAGCATTCCCGAGGTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.7

Weight (kDa)

4.96

Isoelectric Point (pI)

63.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21920
fragaria_vesca	FvH4_3g02220 FvH4_3g22640
malus_domestica	MD05G1345200.v1.1 MD10G1320500.v1.1 MD11G1218800.v1.1
prunus_persica	Prupe.4G021600_v2.0.a1 Prupe.4G212400_v2.0.a1
pyrus_communis	pycom03g15280 pycom05g31410 pycom10g27120 pycom11g19280
rosa_chinensis	RchiOBHm_Chr5g0003291 RchiOBHm_Chr5g0039411
rosa_laevigata	RLG00000031122 RLG00000033912
rosa_multiflora	Rmu_co8348757.1_g000001 Rmu_sc0004395.1_g000009 Rmu_sc0007310.1_g000001 Rmu_sc0010917.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040540 Rroxscaffold_1G00072670
rosa_rugosa	Rorug04G0402500 Rorug05G0179000
rosa_samantha	Rh5AG028600 Rh5AG265600 Rh5BG028700 Rh5BG270000 Rh5CG031000 Rh5CG303100 Rh5DG029200 Rh5DG278100
rosa_wichuraiana	Rw0G014060 Rw5G002660 Rw5G002710 Rw5G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	298
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	2 cut(s)	308, 380
AfiI	CCNNNNNNNGG	1 cut(s)	218
AluBI	AGCT	3 cut(s)	224, 259, 286
AluI	AGCT	3 cut(s)	224, 259, 286
Alw26I	GTCTC	3 cut(s)	69, 191, 356
AlwI	GGATC	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	2 cut(s)	377, 386
ApeKI	GCWGC	2 cut(s)	256, 304
ApoI	RAATTY	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	49, 62, 173
AvaI	CYCGRG	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	268, 316
BccI	CCATC	2 cut(s)	161, 265
BceAI	ACGGC	1 cut(s)	392
BclI	TGATCA	2 cut(s)	324, 367
BcoDI	GTCTC	3 cut(s)	69, 191, 356
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	298
BglI	GCCNNNNNGGC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	257, 305
BlsI	GCNGC	2 cut(s)	258, 306
BmeT110I	CYCGRG	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	281
BsaBI	GATNNNNATC	2 cut(s)	84, 351
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	380, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse8I	GATNNNNATC	2 cut(s)	84, 351
BseDI	CCNNGG	2 cut(s)	380, 408
BseJI	GATNNNNATC	2 cut(s)	84, 351
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseRI	GAGGAG	2 cut(s)	68, 278
BseXI	GCAGC	2 cut(s)	268, 316
BsgI	GTGCAG	1 cut(s)	323
BshFI	GGCC	2 cut(s)	379, 388
BsiHKCI	CYCGRG	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	3 cut(s)	69, 191, 356
BsmBI	CGTCTC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	379, 388
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	407
Bsp143I	GATC	5 cut(s)	79, 85, 324, 352, 367
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	2 cut(s)	379, 388
BspHI	TCATGA	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	380, 408
BssMI	GATC	5 cut(s)	79, 85, 324, 352, 367
BssT1I	CCWWGG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	301, 321
Bst6I	CTCTTC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	249
BstKTI	GATC	5 cut(s)	82, 88, 327, 355, 370
BstMAI	GTCTC	3 cut(s)	69, 191, 356
BstMBI	GATC	5 cut(s)	79, 85, 324, 352, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	268, 316
BstV2I	GAAGAC	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	379, 388
BveI	ACCTGC	1 cut(s)	298
CciI	TCATGA	1 cut(s)	327
CseI	GACGC	1 cut(s)	322
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	6 cut(s)	151, 224, 259, 286, 379, 388
CviKI_1	RGCY	6 cut(s)	151, 224, 259, 286, 379, 388
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	5 cut(s)	81, 87, 326, 354, 369
DpnII	GATC	5 cut(s)	79, 85, 324, 352, 367
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	380
Eco147I	AGGCCT	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	69
Eco57I	CTGAAG	2 cut(s)	308, 380
Eco88I	CYCGRG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	1 cut(s)	331
FaiI	YATR	5 cut(s)	14, 96, 98, 329, 358
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	1 cut(s)	327
FauNDI	CATATG	1 cut(s)	96
FbaI	TGATCA	2 cut(s)	324, 367
Fnu4HI	GCNGC	2 cut(s)	257, 305
Fsp4HI	GCNGC	2 cut(s)	257, 305
GluI	GCNGC	2 cut(s)	257, 305
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	2 cut(s)	379, 388
HgaI	GACGC	1 cut(s)	322
Hin1II	CATG	1 cut(s)	331
HphI	GGTGA	3 cut(s)	49, 62, 173
Hpy188I	TCNGA	2 cut(s)	196, 399
Hpy188III	TCNNGA	3 cut(s)	83, 328, 407
Hpy99I	CGWCG	2 cut(s)	34, 37
HpyAV	CCTTC	2 cut(s)	131, 404
HpyCH4III	ACNGT	2 cut(s)	301, 321
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	331
Ksp22I	TGATCA	2 cut(s)	324, 367
Kzo9I	GATC	5 cut(s)	79, 85, 324, 352, 367
LmnI	GCTCC	2 cut(s)	221, 283
LpnPI	CCDG	6 cut(s)	53, 204, 228, 245, 293, 402
Lsp1109I	GCAGC	2 cut(s)	268, 316
MalI	GATC	5 cut(s)	81, 87, 326, 354, 369
MboI	GATC	5 cut(s)	79, 85, 324, 352, 367
MfeI	CAATTG	1 cut(s)	415
MluCI	AATT	5 cut(s)	7, 40, 173, 187, 415
MnlI	CCTC	7 cut(s)	41, 46, 139, 152, 256, 378, 403
MspA1I	CMGCKG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	415
Mva1269I	GAATGC	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	385
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	5 cut(s)	79, 85, 324, 352, 367
NlaIII	CATG	1 cut(s)	331
PagI	TCATGA	1 cut(s)	327
PceI	AGGCCT	1 cut(s)	388
PctI	GAATGC	1 cut(s)	402
PkrI	GCNGC	2 cut(s)	258, 306
PsrI	GAACNNNNNNTAC	2 cut(s)	163, 195
PvuII	CAGCTG	1 cut(s)	259
SatI	GCNGC	2 cut(s)	257, 305
Sau3AI	GATC	5 cut(s)	79, 85, 324, 352, 367
SetI	ASST	7 cut(s)	52, 163, 226, 261, 288, 312, 414
SfcI	CTRYAG	1 cut(s)	225
SfiI	GGCCNNNNNGGCC	1 cut(s)	385
Sse9I	AATT	5 cut(s)	7, 40, 173, 187, 415
SseBI	AGGCCT	1 cut(s)	388
SsiI	CCGC	1 cut(s)	100
StuI	AGGCCT	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	2 cut(s)	301, 321
TaqI	TCGA	1 cut(s)	82
TasI	AATT	5 cut(s)	7, 40, 173, 187, 415
TseI	GCWGC	2 cut(s)	256, 304
XapI	RAATTY	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.