Rh5DG278100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003392
Physical Location & Seq
Reverse (-)
34013386 .. 34013888
503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG278100.1

Sequence Viewer

Length: 243 bp
ATGACTAAGAAGCAGCTGGAGGAGTTGATGGGTAGGGTGGAGCTGAAGCAAATGACTGTGCAGCAGGTTTTGGCACAGTTGATCATGAGCGTCAGTAGTAATGATAGTGATCCATACGAGACTGATCATCAACGGCCGTGGAGGCCTGTCCTTCAGAGCATTCCCGAGTTCCATGGAGTCGGCGAAAGTGCTCTTTTTGAGTGGTGTTCTTTTCTCTTTGAGGTTCGATATGGACCTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.3

Weight (kDa)

4.98

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 134
AcuI CTGAAG 2 cut(s) 65, 137
AluBI AGCT 2 cut(s) 16, 43
AluI AGCT 2 cut(s) 16, 43
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 104
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 2 cut(s) 134, 143
ApeKI GCWGC 2 cut(s) 13, 61
AspS9I GGNCC 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 25, 73
BccI CCATC 1 cut(s) 22
BceAI ACGGC 2 cut(s) 121, 149
BclI TGATCA 2 cut(s) 81, 124
BcoDI GTCTC 1 cut(s) 113
BfuAI ACCTGC 1 cut(s) 55
BglI GCCNNNNNGGC 1 cut(s) 142
BisI GCNGC 2 cut(s) 14, 62
BlsI GCNGC 2 cut(s) 15, 63
Bme18I GGWCC 1 cut(s) 233
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 137, 172
Bse8I GATNNNNATC 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 137, 172
BseJI GATNNNNATC 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 35
BseX3I CGGCCG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 25, 73
BsgI GTGCAG 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 2 cut(s) 136, 145
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 2 cut(s) 136, 145
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 3 cut(s) 81, 109, 124
Bsp19I CCATGG 1 cut(s) 172
BspANI GGCC 2 cut(s) 136, 145
BspHI TCATGA 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 137, 172
BssMI GATC 3 cut(s) 81, 109, 124
BssT1I CCWWGG 1 cut(s) 172
Bst4CI ACNGT 2 cut(s) 58, 78
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 2 cut(s) 137, 172
BstKTI GATC 3 cut(s) 84, 112, 127
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 3 cut(s) 81, 109, 124
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 25, 73
BstZI CGGCCG 1 cut(s) 134
BsuRI GGCC 2 cut(s) 136, 145
BtgI CCRYGG 2 cut(s) 137, 172
BveI ACCTGC 1 cut(s) 55
CciI TCATGA 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 233
CseI GACGC 1 cut(s) 79
CspCI CAANNNNNGTGG 2 cut(s) 119, 154
CviAII CATG 2 cut(s) 85, 173
CviJI RGCY 4 cut(s) 16, 43, 136, 145
CviKI_1 RGCY 4 cut(s) 16, 43, 136, 145
DdeI CTNAG 1 cut(s) 6
DpnI GATC 3 cut(s) 83, 111, 126
DpnII GATC 3 cut(s) 81, 109, 124
EaeI YGGCCR 1 cut(s) 134
EagI CGGCCG 1 cut(s) 134
EclXI CGGCCG 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 172
Eco147I AGGCCT 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 233
Eco52I CGGCCG 1 cut(s) 134
Eco57I CTGAAG 2 cut(s) 65, 137
Eco88I CYCGRG 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 2 cut(s) 88, 176
FaiI YATR 4 cut(s) 86, 115, 174, 231
FatI CATG 2 cut(s) 84, 172
FbaI TGATCA 2 cut(s) 81, 124
Fnu4HI GCNGC 2 cut(s) 14, 62
Fsp4HI GCNGC 2 cut(s) 14, 62
GluI GCNGC 2 cut(s) 14, 62
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 2 cut(s) 136, 145
HgaI GACGC 1 cut(s) 79
Hin1II CATG 2 cut(s) 88, 176
HinfI GANTC 1 cut(s) 177
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 85, 164
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 58, 78
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 2 cut(s) 88, 176
Ksp22I TGATCA 2 cut(s) 81, 124
Kzo9I GATC 3 cut(s) 81, 109, 124
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 3 cut(s) 2, 50, 159
Lsp1109I GCAGC 2 cut(s) 25, 73
MalI GATC 3 cut(s) 83, 111, 126
MboI GATC 3 cut(s) 81, 109, 124
MhlI GDGCHC 1 cut(s) 193
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 3 cut(s) 13, 135, 214
MspA1I CMGCKG 1 cut(s) 16
Mva1269I GAATGC 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 142
NcoI CCATGG 1 cut(s) 172
NdeII GATC 3 cut(s) 81, 109, 124
NlaIII CATG 2 cut(s) 88, 176
PagI TCATGA 1 cut(s) 84
PceI AGGCCT 1 cut(s) 145
PctI GAATGC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 15, 63
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 16
SatI GCNGC 2 cut(s) 14, 62
Sau3AI GATC 3 cut(s) 81, 109, 124
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 1 cut(s) 186
SduI GDGCHC 1 cut(s) 193
SetI ASST 5 cut(s) 18, 45, 69, 225, 238
SfiI GGCCNNNNNGGCC 1 cut(s) 142
SgeI CNNG 9 cut(s) 29, 77, 97, 130, 150, 158, 176, 178, 185
SinI GGWCC 1 cut(s) 233
SseBI AGGCCT 1 cut(s) 145
StuI AGGCCT 1 cut(s) 145
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 2 cut(s) 58, 78
TaqI TCGA 1 cut(s) 226
TseI GCWGC 2 cut(s) 13, 61
VpaK11BI GGWCC 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.