Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003392

Physical Location & Seq

Genomic Coordinates Reverse (-)

13246774 .. 13247482

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G212400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGGAATTGTATAAGGCATGAGCCGTCTATGCAATGGGGAGGGGATGATTGGGGTTGCATGGCAAATGGTGTTGATGATCATGAAGAGGAGGAGATCATGAAGAAGAATAAGAAGATCAAGATGGAGGAGGGCCAGGGGGGTTTTGAAGATTTGGGAGCAGTTGGGTTGGCTAAGAAACTTGGTGGAGCCACAGAGGTGAAGATCAAGATCACAAAGAAGCAGTTGGAAGAGTTGCTGGGTAGGGTGGATTTAAAGCAAATGTCAGTGCAACAAGTTTTGGCTAAGCTGATTAGCTTTGGTGATCGATATGAGGCCCATCAACGGTCTTGGAGGCCTGCCCTTCAAAGTATTCCTGAGGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.69

Weight (kDa)

5.94

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21920
fragaria_vesca	FvH4_3g02220 FvH4_3g22640
malus_domestica	MD05G1345200.v1.1 MD10G1320500.v1.1 MD11G1218800.v1.1
prunus_persica	Prupe.4G021600_v2.0.a1 Prupe.4G212400_v2.0.a1
pyrus_communis	pycom03g15280 pycom05g31410 pycom10g27120 pycom11g19280
rosa_chinensis	RchiOBHm_Chr5g0003291 RchiOBHm_Chr5g0039411
rosa_laevigata	RLG00000031122 RLG00000033912
rosa_multiflora	Rmu_co8348757.1_g000001 Rmu_sc0004395.1_g000009 Rmu_sc0007310.1_g000001 Rmu_sc0010917.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040540 Rroxscaffold_1G00072670
rosa_rugosa	Rorug04G0402500 Rorug05G0179000
rosa_samantha	Rh5AG028600 Rh5AG265600 Rh5BG028700 Rh5BG270000 Rh5CG031000 Rh5CG303100 Rh5DG029200 Rh5DG278100
rosa_wichuraiana	Rw0G014060 Rw5G002660 Rw5G002710 Rw5G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	149, 347
AjnI	CCWGG	1 cut(s)	135
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	2 cut(s)	289, 297
AluI	AGCT	2 cut(s)	289, 297
AoxI	GGCC	3 cut(s)	133, 315, 335
AspS9I	GGNCC	2 cut(s)	133, 316
AsuHPI	GGTGA	2 cut(s)	211, 314
AxyI	CCTNAGG	1 cut(s)	357
BccI	CCATC	2 cut(s)	118, 327
BceAI	ACGGC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	79
BlpI	GCTNAGC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	133, 316
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	137
Bpu1102I	GCTNAGC	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	137
BseCI	ATCGAT	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	3 cut(s)	104, 107, 143
BseYI	CCCAGC	1 cut(s)	238
BshFI	GGCC	3 cut(s)	135, 317, 337
BshVI	ATCGAT	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	324
BsnI	GGCC	3 cut(s)	135, 317, 337
Bsp143I	GATC	6 cut(s)	79, 96, 117, 204, 210, 304
Bsp1720I	GCTNAGC	1 cut(s)	285
BspANI	GGCC	3 cut(s)	135, 317, 337
BspCNI	CTCAG	1 cut(s)	349
BspDI	ATCGAT	1 cut(s)	307
BspHI	TCATGA	2 cut(s)	82, 99
BspLI	GGNNCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	6 cut(s)	79, 96, 117, 204, 210, 304
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	2 cut(s)	81, 225
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	3 cut(s)	174, 285, 357
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	6 cut(s)	82, 99, 120, 207, 213, 307
BstMBI	GATC	6 cut(s)	79, 96, 117, 204, 210, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
Bsu15I	ATCGAT	1 cut(s)	307
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	3 cut(s)	135, 317, 337
BsuTUI	ATCGAT	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	339
CciI	TCATGA	2 cut(s)	82, 99
Cfr13I	GGNCC	2 cut(s)	133, 316
ClaI	ATCGAT	1 cut(s)	307
CviAII	CATG	4 cut(s)	20, 61, 83, 100
CviJI	RGCY	9 cut(s)	25, 135, 173, 191, 284, 289, 297, 317, 337
CviKI_1	RGCY	9 cut(s)	25, 135, 173, 191, 284, 289, 297, 317, 337
DdeI	CTNAG	3 cut(s)	174, 285, 357
DpnI	GATC	6 cut(s)	81, 98, 119, 206, 212, 306
DpnII	GATC	6 cut(s)	79, 96, 117, 204, 210, 304
DraI	TTTAAA	1 cut(s)	255
Eam1104I	CTCTTC	2 cut(s)	81, 225
EarI	CTCTTC	2 cut(s)	81, 225
Eco147I	AGGCCT	1 cut(s)	337
Eco81I	CCTNAGG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	135
FaeI	CATG	4 cut(s)	23, 64, 86, 103
FaiI	YATR	7 cut(s)	14, 21, 32, 62, 84, 101, 312
FatI	CATG	4 cut(s)	19, 60, 82, 99
FbaI	TGATCA	1 cut(s)	79
FokI	GGATG	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	135, 317, 337
Hin1II	CATG	4 cut(s)	23, 64, 86, 103
HphI	GGTGA	2 cut(s)	211, 314
Hpy188III	TCNNGA	5 cut(s)	83, 100, 121, 208, 356
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4V	TGCA	3 cut(s)	34, 60, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	3 cut(s)	174, 285, 357
Hsp92II	CATG	4 cut(s)	23, 64, 86, 103
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	6 cut(s)	79, 96, 117, 204, 210, 304
LmnI	GCTCC	2 cut(s)	158, 188
LpnPI	CCDG	4 cut(s)	122, 149, 224, 351
MalI	GATC	6 cut(s)	81, 98, 119, 206, 212, 306
MboI	GATC	6 cut(s)	79, 96, 117, 204, 210, 304
MboII	GAAGA	7 cut(s)	98, 115, 118, 127, 161, 214, 242
MluCI	AATT	2 cut(s)	7, 364
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	9 cut(s)	35, 82, 85, 121, 124, 190, 307, 327, 352
MseI	TTAA	3 cut(s)	254, 363, 367
MslI	CAYNNNNRTG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	6 cut(s)	79, 96, 117, 204, 210, 304
NlaIII	CATG	4 cut(s)	23, 64, 86, 103
NlaIV	GGNNCC	1 cut(s)	190
OliI	CACNNNNGTG	1 cut(s)	197
PacI	TTAATTAA	1 cut(s)	367
PagI	TCATGA	2 cut(s)	82, 99
PceI	AGGCCT	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	2 cut(s)	133, 316
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	254, 363, 367
Sau3AI	GATC	6 cut(s)	79, 96, 117, 204, 210, 304
Sau96I	GGNCC	2 cut(s)	133, 316
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	4 cut(s)	201, 291, 299, 363
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	7, 364
SseBI	AGGCCT	1 cut(s)	337
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	307
TasI	AATT	2 cut(s)	7, 364
Tru1I	TTAA	3 cut(s)	254, 363, 367
Tru9I	TTAA	3 cut(s)	254, 363, 367
TscAI	CASTG	1 cut(s)	273
TspDTI	ATGAA	2 cut(s)	99, 116
TspRI	CASTG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.