Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003392

Physical Location & Seq

Genomic Coordinates Reverse (-)

15674970 .. 15675826

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGGAATTGTATGAGGCACGAGGAATCGTCGTCGGTGAACTGGGGAGGTGAGGACTGGGGTTCTCTGGCGAATGATGATCGAGATCACAAGCATATGAGGAAGACGAAGAAGATAGAAGCAGAAGAAGAGGAAGGGCTTCTTGGAGGTGAAGAAGATGGTGGTAGATTTGCTGGTTCTTACGATTCACCGAAGACGAAAGCTCAACCAGCAGGAGGAGCTAATACAGAAGTGAAGATAAAGATGACGAAGAAGCAGCTGGAGGAGTTGATGGGTAGGGTGGAGCTGAAGCAAATGACTGTACAGCAGGTTTTGGCACAGTTGATCATGAGCGTTAGTAGTAGTAGTACCGATCCATACGAGGCTGATCATCAGCGTCCGTGGAGGCCTGTTCTTCAGAGCATTCCCGAGGTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.51

Weight (kDa)

5.26

Isoelectric Point (pI)

66.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21920
fragaria_vesca	FvH4_3g02220 FvH4_3g22640
malus_domestica	MD05G1345200.v1.1 MD10G1320500.v1.1 MD11G1218800.v1.1
prunus_persica	Prupe.4G021600_v2.0.a1 Prupe.4G212400_v2.0.a1
pyrus_communis	pycom03g15280 pycom05g31410 pycom10g27120 pycom11g19280
rosa_chinensis	RchiOBHm_Chr5g0003291 RchiOBHm_Chr5g0039411
rosa_laevigata	RLG00000031122 RLG00000033912
rosa_multiflora	Rmu_co8348757.1_g000001 Rmu_sc0004395.1_g000009 Rmu_sc0007310.1_g000001 Rmu_sc0010917.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040540 Rroxscaffold_1G00072670
rosa_rugosa	Rorug04G0402500 Rorug05G0179000
rosa_samantha	Rh5AG028600 Rh5AG265600 Rh5BG028700 Rh5BG270000 Rh5CG031000 Rh5CG303100 Rh5DG029200 Rh5DG278100
rosa_wichuraiana	Rw0G014060 Rw5G002660 Rw5G002710 Rw5G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	298
AclWI	GGATC	1 cut(s)	347
AcuI	CTGAAG	2 cut(s)	308, 380
AfaI	GTAC	2 cut(s)	303, 349
AfiI	CCNNNNNNNGG	1 cut(s)	215
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	4 cut(s)	203, 221, 259, 286
AluI	AGCT	4 cut(s)	203, 221, 259, 286
AlwI	GGATC	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	138
AsuHPI	GGTGA	4 cut(s)	49, 62, 161, 180
AvaI	CYCGRG	1 cut(s)	407
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	2 cut(s)	110, 200
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	2 cut(s)	152, 265
BclI	TGATCA	2 cut(s)	324, 367
BfuAI	ACCTGC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
BmeT110I	CYCGRG	1 cut(s)	407
BmrI	ACTGGG	2 cut(s)	52, 67
BmuI	ACTGGG	2 cut(s)	52, 67
BpiI	GAAGAC	2 cut(s)	110, 200
BpmI	CTGGAG	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	380, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	2 cut(s)	47, 62
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	380, 408
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseNI	ACTGG	2 cut(s)	47, 62
BseRI	GAGGAG	2 cut(s)	231, 278
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	388
BsoBI	CYCGRG	1 cut(s)	407
Bsp1407I	TGTACA	1 cut(s)	301
Bsp143I	GATC	5 cut(s)	79, 85, 324, 352, 367
BspANI	GGCC	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	1 cut(s)	347
BsrGI	TGTACA	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	47, 62
BssECI	CCNNGG	2 cut(s)	380, 408
BssMI	GATC	5 cut(s)	79, 85, 324, 352, 367
BssSI	CACGAG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	301, 321
Bst6I	CTCTTC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	301
BstDSI	CCRYGG	1 cut(s)	380
BstKTI	GATC	5 cut(s)	82, 88, 327, 355, 370
BstMBI	GATC	5 cut(s)	79, 85, 324, 352, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 218
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	2 cut(s)	110, 200
BsuRI	GGCC	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	380
BveI	ACCTGC	1 cut(s)	298
CciI	TCATGA	1 cut(s)	327
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	302, 348
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	7 cut(s)	139, 203, 221, 259, 286, 365, 388
CviKI_1	RGCY	7 cut(s)	139, 203, 221, 259, 286, 365, 388
CviQI	GTAC	2 cut(s)	302, 348
DpnI	GATC	5 cut(s)	81, 87, 326, 354, 369
DpnII	GATC	5 cut(s)	79, 85, 324, 352, 367
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	388
Eco57I	CTGAAG	2 cut(s)	308, 380
Eco88I	CYCGRG	1 cut(s)	407
FaeI	CATG	1 cut(s)	331
FaiI	YATR	5 cut(s)	14, 96, 98, 329, 358
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FatI	CATG	1 cut(s)	327
FauNDI	CATATG	1 cut(s)	96
FbaI	TGATCA	2 cut(s)	324, 367
Fnu4HI	GCNGC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	388
HgaI	GACGC	1 cut(s)	365
Hin1II	CATG	1 cut(s)	331
HinfI	GANTC	2 cut(s)	26, 185
HphI	GGTGA	4 cut(s)	49, 62, 161, 180
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	399
Hpy188III	TCNNGA	3 cut(s)	83, 328, 407
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	2 cut(s)	34, 37
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	2 cut(s)	301, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 218
Hsp92II	CATG	1 cut(s)	331
Ksp22I	TGATCA	2 cut(s)	324, 367
Kzo9I	GATC	5 cut(s)	79, 85, 324, 352, 367
LmnI	GCTCC	2 cut(s)	218, 283
LpnPI	CCDG	9 cut(s)	28, 43, 53, 159, 198, 222, 245, 293, 402
Lsp1109I	GCAGC	1 cut(s)	268
MalI	GATC	5 cut(s)	81, 87, 326, 354, 369
MboI	GATC	5 cut(s)	79, 85, 324, 352, 367
MfeI	CAATTG	1 cut(s)	415
MluCI	AATT	2 cut(s)	7, 415
MroXI	GAANNNNTTC	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	415
Mva1269I	GAATGC	1 cut(s)	402
MwoI	GCNNNNNNNGC	2 cut(s)	209, 218
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	5 cut(s)	79, 85, 324, 352, 367
NlaIII	CATG	1 cut(s)	331
PagI	TCATGA	1 cut(s)	327
PceI	AGGCCT	1 cut(s)	388
PctI	GAATGC	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	26, 185
PkrI	GCNGC	1 cut(s)	258
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	2 cut(s)	303, 349
RsaNI	GTAC	2 cut(s)	302, 348
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	5 cut(s)	79, 85, 324, 352, 367
SetI	ASST	8 cut(s)	52, 151, 205, 223, 261, 288, 312, 414
Sse9I	AATT	2 cut(s)	7, 415
SseBI	AGGCCT	1 cut(s)	388
StuI	AGGCCT	1 cut(s)	388
TaaI	ACNGT	2 cut(s)	301, 321
TaqI	TCGA	1 cut(s)	82
TasI	AATT	2 cut(s)	7, 415
TatI	WGTACW	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	26, 185
TseI	GCWGC	1 cut(s)	256
TspGWI	ACGGA	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.