Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Forward (+)

15924349 .. 15926665

Gene Structure 2317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33000.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGACAACTGGCCGACCAAATAATATTTTAGCATTGAAAATTTCTACTAGATCAAGCTCTCTCACTGTCGGAGAGCAATTCTGCGCCGTCTTTATACCTTTCTTTGCCATTATCGATGTCCTAGTTTCCTCCGTCGGACAATGCTTCGATTGCCGCAGCACATCGCCTCGGACATGTCAGCACGCGGATCTGGAACGTCTTGCTCGTGAATCTCAATTTTCAGTCAATGAAGTTGAAGCTTTGTATGAGCTATTCAAGAAATTGAGCTGTTCAATTATTGATGACGGCTTGATTCACAAGGAAGAGCTTAGACTGGCGCTGTTCCAAGCTCCATATGGTGAGAACCTCTTTCTTGATAGGGTTTTTGATTTGTTCGATGAAAAGAAGAATGGGGTTATTGAGTTTGAGGAATTCATCCATGCACTCAGTGTCTTTCATCCCTATGCATCAATCCAGGAGAAGACCGATTTTGCATTTAGGCTCTATGATCTAAGACAAACTGGATTCATTGAGCGAGAAGAGGTGCAACAAATGGTTTCTGCTATTCTCTTGGAATCTGATATGATGCTATCCGATGAACTTCTGACCATGATTATTGATAAAACATTTGCTGATGCAGATTCTGACAAAGACGGTAAAATTAGTAAGGATGAATGGAATGTCTATGTGCATAAACATCCTAGCTTGTTGAAGAATATGACTCTTCCTTACCTAAAGGATGTGACGACAGCATTCCCAAGTTTTATATTCAACACTGAGGTTGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009628 GO:0009651 GO:0009705 GO:0010959 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032879 GO:0042538 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

256

Amino Acids

29.34

Weight (kDa)

4.74

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	108 - 133	7.4e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	185
AciI	CCGC	2 cut(s)	154, 185
AclWI	GGATC	1 cut(s)	195
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	2 cut(s)	39, 410
AdeI	CACNNNGTG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	7 cut(s)	37, 236, 256, 273, 691, 751, 764
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	7 cut(s)	57, 239, 250, 267, 307, 329, 684
AluI	AGCT	7 cut(s)	57, 239, 250, 267, 307, 329, 684
AlwI	GGATC	1 cut(s)	195
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	156
ApoI	RAATTY	2 cut(s)	39, 410
AspLEI	GCGC	2 cut(s)	86, 319
AsuHPI	GGTGA	1 cut(s)	350
BauI	CACGAG	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	467
BbvI	GCAGC	1 cut(s)	168
BceAI	ACGGC	2 cut(s)	71, 301
BciT130I	CCWGG	1 cut(s)	455
BfaI	CTAG	3 cut(s)	48, 122, 681
BfoI	RGCGCY	1 cut(s)	320
BisI	GCNGC	2 cut(s)	154, 157
BlsI	GCNGC	2 cut(s)	155, 158
Bme1390I	CCNGG	1 cut(s)	455
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	3 cut(s)	455, 555, 604
BpiI	GAAGAC	1 cut(s)	467
Bsa29I	ATCGAT	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	167
Bse1I	ACTGG	3 cut(s)	13, 318, 505
BseBI	CCWGG	1 cut(s)	455
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	5 cut(s)	414, 436, 655, 676, 724
BseMII	CTCAG	2 cut(s)	439, 747
BseNI	ACTGG	3 cut(s)	13, 318, 505
BseXI	GCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	12
BshVI	ATCGAT	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	50, 187, 487
BspACI	CCGC	2 cut(s)	154, 185
BspANI	GGCC	1 cut(s)	12
BspCNI	CTCAG	2 cut(s)	438, 748
BspDI	ATCGAT	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	185
BspPI	GGATC	1 cut(s)	195
BspQI	GCTCTTC	1 cut(s)	297
BsrI	ACTGG	3 cut(s)	13, 318, 505
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	3 cut(s)	50, 187, 487
BssSI	CACGAG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	2 cut(s)	67, 635
Bst6I	CTCTTC	3 cut(s)	297, 513, 708
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	4 cut(s)	308, 425, 491, 756
BstF5I	GGATG	5 cut(s)	414, 436, 655, 676, 724
BstFNI	CGCG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	2 cut(s)	86, 319
BstKTI	GATC	3 cut(s)	53, 190, 490
BstMBI	GATC	3 cut(s)	50, 187, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	467
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Bsu15I	ATCGAT	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	12
BsuTUI	ATCGAT	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	5 cut(s)	414, 436, 655, 676, 724
BtsIMutI	CAGTG	3 cut(s)	63, 433, 753
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	2 cut(s)	86, 319
ClaI	ATCGAT	1 cut(s)	114
CviAII	CATG	3 cut(s)	174, 419, 589
DdeI	CTNAG	4 cut(s)	308, 425, 491, 756
DpnI	GATC	3 cut(s)	52, 189, 489
DpnII	GATC	3 cut(s)	50, 187, 487
DraIII	CACNNNGTG	1 cut(s)	428
EaeI	YGGCCR	1 cut(s)	10
Eam1104I	CTCTTC	3 cut(s)	297, 513, 708
EarI	CTCTTC	3 cut(s)	297, 513, 708
EcoRI	GAATTC	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	453
EcoT22I	ATGCAT	1 cut(s)	448
FaeI	CATG	3 cut(s)	177, 422, 592
FatI	CATG	3 cut(s)	173, 418, 588
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	154, 157
FokI	GGATG	5 cut(s)	401, 423, 662, 663, 731
Fsp4HI	GCNGC	2 cut(s)	154, 157
FspBI	CTAG	3 cut(s)	48, 122, 681
GlaI	GCGC	2 cut(s)	85, 318
GluI	GCNGC	2 cut(s)	154, 157
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	12
HhaI	GCGC	2 cut(s)	86, 319
Hin1II	CATG	3 cut(s)	177, 422, 592
Hin6I	GCGC	2 cut(s)	84, 317
HinP1I	GCGC	2 cut(s)	84, 317
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	6 cut(s)	209, 292, 504, 554, 620, 700
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	7 cut(s)	71, 137, 171, 559, 574, 585, 625
Hpy188III	TCNNGA	4 cut(s)	191, 206, 256, 353
Hpy99I	CGWCG	1 cut(s)	137
HpyCH4III	ACNGT	2 cut(s)	67, 635
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	6 cut(s)	422, 446, 473, 526, 617, 670
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	4 cut(s)	308, 425, 491, 756
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	3 cut(s)	177, 422, 592
HspAI	GCGC	2 cut(s)	84, 317
Kzo9I	GATC	3 cut(s)	50, 187, 487
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	5 cut(s)	176, 299, 440, 467, 486
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	3 cut(s)	455, 555, 604
MaeI	CTAG	3 cut(s)	48, 122, 681
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	721
MalI	GATC	3 cut(s)	52, 189, 489
MboI	GATC	3 cut(s)	50, 187, 487
MboII	GAAGA	6 cut(s)	314, 397, 472, 530, 695, 703
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	7 cut(s)	39, 77, 215, 260, 273, 410, 639
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	2 cut(s)	49, 115
MnlI	CCTC	6 cut(s)	139, 177, 356, 400, 514, 751
Mph1103I	ATGCAT	1 cut(s)	448
MslI	CAYNNNNRTG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	455
Mva1269I	GAATGC	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	150
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	3 cut(s)	50, 187, 487
NlaIII	CATG	3 cut(s)	177, 422, 592
NmuCI	GTSAC	1 cut(s)	721
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	1 cut(s)	177
PciI	ACATGT	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PctI	GAATGC	1 cut(s)	731
PfeI	GAWTC	5 cut(s)	209, 292, 504, 554, 620
PfoI	TCCNGGA	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	155, 158
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PscI	ACATGT	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	441
SapI	GCTCTTC	1 cut(s)	297
SatI	GCNGC	2 cut(s)	154, 157
Sau3AI	GATC	3 cut(s)	50, 187, 487
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	1 cut(s)	455
SfaNI	GCATC	3 cut(s)	455, 555, 604
SmiMI	CAYNNNNRTG	1 cut(s)	441
Sse9I	AATT	7 cut(s)	39, 77, 215, 260, 273, 410, 639
SsiI	CCGC	2 cut(s)	154, 185
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	3 cut(s)	48, 122, 681
StyD4I	CCNGG	1 cut(s)	453
TaaI	ACNGT	2 cut(s)	67, 635
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	3 cut(s)	114, 147, 375
TaqII	GACCGA	1 cut(s)	479
TasI	AATT	7 cut(s)	39, 77, 215, 260, 273, 410, 639
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	5 cut(s)	209, 292, 504, 554, 620
TscAI	CASTG	3 cut(s)	70, 433, 760
TseFI	GTSAC	1 cut(s)	721
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	721
TspDTI	ATGAA	7 cut(s)	243, 393, 403, 425, 496, 591, 666
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	3 cut(s)	70, 433, 760
XapI	RAATTY	2 cut(s)	39, 410
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XspI	CTAG	3 cut(s)	48, 122, 681
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.