Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Forward (+)

67313817 .. 67315328

Gene Structure 1512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG496900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGACAATTACTCGAGAACGAGCTCTCTATCATTGGGCGAGAAGCTGTGCGCGGCGTTTATACCGTTTGTAGCGATCATAGAGGTGTTGGTTTTGGCCGTCACCGATTGCTTCACTTACCGGCCTCGCCCTGTCAAACGTGCTCACGCTTTCGGAGACGTGACTCAGCTCGCCCGGGAAACTCGATTTAGTGTTAATGAGCTGGAGGCGTTGTATGAGCTGTTTAAGAAGTTGAGTAGCTCGATCATCGATGACGGGTTGATTCACAAGGAAGAGCTTCAATTAGCACTGTTCCAAACTCGCCATGGCGAAAATCTTTTCCTTGACCGGGTTTTTGATCTGTTTGACGAGAAGAAAAATGGTGTCATTGAATTCGATGAGTTCATTCACGCGCTCAATGTGTTTCATCCCTATGCTCCTATACAGGAGAAGATTGATTTTGCATTTAGGCTGTATGATCTGAGACATACTGGATTCATTGAGCGTGAAGAAGTTAAGCAAATGGTGATTGCTATACTGATGGAGTCTGACACGATACTGTCAGATGATCTTCTGGAGTCTATCATTGATAAGACATTTGATGACGCTGATGCCGACAAGGATGGGAGAATCAATAAACAAGAATGGAAGGCTTTTGTGCTTCGACATCCAGCCCTTCTGAAAAACATGACTCTTCCTTATTTGAAGGACATCACCACAATGTTTCCAAGTTTCATTTTCAACACCGAAGTCGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009628 GO:0009651 GO:0009705 GO:0010959 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032879 GO:0042538 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

246

Amino Acids

28.54

Weight (kDa)

4.9

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	143 - 210	8.7e-11	EF-hand domain pair
EF-hand_1	PF00036	189 - 213	8.3e-06	EF hand domain
EF-hand_5	PF13202	189 - 213	3.7e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	53, 392
AciI	CCGC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	4 cut(s)	281, 371, 685, 721
AjiI	CACGTC	1 cut(s)	160
AluBI	AGCT	7 cut(s)	24, 46, 169, 202, 220, 240, 277
AluI	AGCT	7 cut(s)	24, 46, 169, 202, 220, 240, 277
Alw21I	GWGCWC	2 cut(s)	26, 145
Alw26I	GTCTC	2 cut(s)	150, 457
Ama87I	CYCGRG	2 cut(s)	13, 174
AoxI	GGCC	2 cut(s)	96, 122
ApoI	RAATTY	1 cut(s)	371
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
Asp700I	GAANNNNTTC	1 cut(s)	276
AspLEI	GCGC	2 cut(s)	53, 394
AsuC2I	CCSGG	3 cut(s)	175, 176, 329
AsuHPI	GGTGA	3 cut(s)	94, 517, 685
AvaI	CYCGRG	2 cut(s)	13, 174
BanII	GRGCYC	1 cut(s)	26
Bbv12I	GWGCWC	2 cut(s)	26, 145
BccI	CCATC	2 cut(s)	514, 596
BceAI	ACGGC	1 cut(s)	83
BcnI	CCSGG	3 cut(s)	175, 176, 329
BcoDI	GTCTC	2 cut(s)	150, 457
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	3 cut(s)	175, 176, 329
BmeT110I	CYCGRG	2 cut(s)	13, 174
BmgBI	CACGTC	1 cut(s)	160
BmrFI	CCNGG	3 cut(s)	175, 176, 329
BmsI	GCATC	1 cut(s)	580
BpmI	CTGGAG	2 cut(s)	224, 575
BpuMI	CCSGG	3 cut(s)	175, 176, 329
Bsa29I	ATCGAT	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	174, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	475
BseCI	ATCGAT	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	174, 304
BseGI	GGATG	3 cut(s)	406, 607, 646
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	179, 452
BseNI	ACTGG	1 cut(s)	475
Bsh1236I	CGCG	2 cut(s)	53, 392
BshFI	GGCC	2 cut(s)	98, 124
BshVI	ATCGAT	1 cut(s)	249
BsiHKAI	GWGCWC	2 cut(s)	26, 145
BsiHKCI	CYCGRG	2 cut(s)	13, 174
BsiSI	CCGG	3 cut(s)	121, 175, 328
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	150, 457
BsmBI	CGTCTC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	98, 124
BsoBI	CYCGRG	2 cut(s)	13, 174
Bsp1286I	GDGCHC	2 cut(s)	26, 145
Bsp143I	GATC	5 cut(s)	75, 243, 337, 457, 547
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	2 cut(s)	98, 124
BspCNI	CTCAG	2 cut(s)	178, 453
BspDI	ATCGAT	1 cut(s)	249
BspFNI	CGCG	2 cut(s)	53, 392
BspQI	GCTCTTC	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	174, 304
BssMI	GATC	5 cut(s)	75, 243, 337, 457, 547
BssT1I	CCWWGG	1 cut(s)	304
Bst4CI	ACNGT	3 cut(s)	66, 291, 540
Bst6I	CTCTTC	2 cut(s)	267, 678
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	165, 461
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	3 cut(s)	406, 607, 646
BstFNI	CGCG	2 cut(s)	53, 392
BstHHI	GCGC	2 cut(s)	53, 394
BstKTI	GATC	5 cut(s)	78, 246, 340, 460, 550
BstMAI	GTCTC	2 cut(s)	150, 457
BstMBI	GATC	5 cut(s)	75, 243, 337, 457, 547
BstSCI	CCNGG	3 cut(s)	173, 174, 327
BstUI	CGCG	2 cut(s)	53, 392
Bsu15I	ATCGAT	1 cut(s)	249
BsuRI	GGCC	2 cut(s)	98, 124
BsuTUI	ATCGAT	1 cut(s)	249
BtgI	CCRYGG	1 cut(s)	304
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	406, 607, 646
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	2 cut(s)	53, 394
Cfr10I	RCCGGY	1 cut(s)	120
Cfr9I	CCCGGG	1 cut(s)	174
ClaI	ATCGAT	1 cut(s)	249
CseI	GACGC	1 cut(s)	593
CviAII	CATG	2 cut(s)	305, 667
DdeI	CTNAG	2 cut(s)	165, 461
DpnI	GATC	5 cut(s)	77, 245, 339, 459, 549
DpnII	GATC	5 cut(s)	75, 243, 337, 457, 547
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	2 cut(s)	267, 678
EarI	CTCTTC	2 cut(s)	267, 678
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	24
Eco88I	CYCGRG	2 cut(s)	13, 174
EcoICRI	GAGCTC	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	2 cut(s)	308, 670
FatI	CATG	2 cut(s)	304, 666
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	3 cut(s)	393, 614, 633
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	54
GlaI	GCGC	2 cut(s)	52, 393
GluI	GCNGC	1 cut(s)	54
GsuI	CTGGAG	2 cut(s)	224, 575
HaeIII	GGCC	2 cut(s)	98, 124
HapII	CCGG	3 cut(s)	121, 175, 328
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	2 cut(s)	53, 394
Hin1II	CATG	2 cut(s)	308, 670
Hin6I	GCGC	2 cut(s)	51, 392
HinP1I	GCGC	2 cut(s)	51, 392
HinfI	GANTC	7 cut(s)	163, 262, 474, 524, 557, 609, 670
HpaII	CCGG	3 cut(s)	121, 175, 328
HphI	GGTGA	3 cut(s)	94, 517, 685
Hpy188I	TCNGA	5 cut(s)	155, 462, 529, 544, 660
Hpy188III	TCNNGA	2 cut(s)	15, 554
HpyAV	CCTTC	3 cut(s)	622, 665, 679
HpyCH4III	ACNGT	3 cut(s)	66, 291, 540
HpyCH4IV	ACGT	2 cut(s)	139, 159
HpyCH4V	TGCA	1 cut(s)	443
HpyF3I	CTNAG	2 cut(s)	165, 461
HpySE526I	ACGT	2 cut(s)	139, 159
Hsp92II	CATG	2 cut(s)	308, 670
HspAI	GCGC	2 cut(s)	51, 392
Kzo9I	GATC	5 cut(s)	75, 243, 337, 457, 547
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	421
LpnPI	CCDG	9 cut(s)	134, 144, 188, 188, 341, 410, 456, 539, 663
LweI	GCATC	1 cut(s)	580
MaeII	ACGT	2 cut(s)	139, 159
MaeIII	GTNAC	2 cut(s)	100, 160
MalI	GATC	5 cut(s)	77, 245, 339, 459, 549
MboI	GATC	5 cut(s)	75, 243, 337, 457, 547
MboII	GAAGA	6 cut(s)	284, 364, 442, 500, 542, 665
MhlI	GDGCHC	2 cut(s)	26, 145
MluCI	AATT	3 cut(s)	7, 281, 371
MlyI	GAGTC	4 cut(s)	157, 533, 566, 664
MnlI	CCTC	3 cut(s)	76, 135, 199
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	3 cut(s)	195, 225, 495
MslI	CAYNNNNRTG	3 cut(s)	83, 411, 698
MspI	CCGG	3 cut(s)	121, 175, 328
MspR9I	CCNGG	3 cut(s)	175, 176, 329
MvnI	CGCG	2 cut(s)	53, 392
NciI	CCSGG	3 cut(s)	175, 176, 329
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	5 cut(s)	75, 243, 337, 457, 547
NlaIII	CATG	2 cut(s)	308, 670
NmuCI	GTSAC	2 cut(s)	100, 160
PaeR7I	CTCGAG	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	262, 474, 609
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	4 cut(s)	157, 532, 565, 664
PpsI	GAGTC	4 cut(s)	157, 532, 565, 664
Psp124BI	GAGCTC	1 cut(s)	26
RseI	CAYNNNNRTG	3 cut(s)	83, 411, 698
SacI	GAGCTC	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	195, 225, 495
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	5 cut(s)	75, 243, 337, 457, 547
SchI	GAGTC	4 cut(s)	157, 533, 566, 664
ScrFI	CCNGG	3 cut(s)	175, 176, 329
SduI	GDGCHC	2 cut(s)	26, 145
SfaNI	GCATC	1 cut(s)	580
Sfr274I	CTCGAG	1 cut(s)	13
SlaI	CTCGAG	1 cut(s)	13
SmaI	CCCGGG	1 cut(s)	176
SmiMI	CAYNNNNRTG	3 cut(s)	83, 411, 698
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	3 cut(s)	7, 281, 371
SsiI	CCGC	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	3 cut(s)	173, 174, 327
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	3 cut(s)	66, 291, 540
TaiI	ACGT	2 cut(s)	142, 162
TaqI	TCGA	7 cut(s)	14, 184, 242, 249, 375, 643, 732
TasI	AATT	3 cut(s)	7, 281, 371
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	3 cut(s)	262, 474, 609
Tru1I	TTAA	3 cut(s)	195, 225, 495
Tru9I	TTAA	3 cut(s)	195, 225, 495
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	2 cut(s)	100, 160
Tsp45I	GTSAC	2 cut(s)	100, 160
TspDTI	ATGAA	4 cut(s)	373, 395, 466, 703
TspMI	CCCGGG	1 cut(s)	174
TspRI	CASTG	1 cut(s)	294
XapI	RAATTY	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XhoI	CTCGAG	1 cut(s)	13
XmaI	CCCGGG	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.