Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013116.1

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Reverse (-)

2932 .. 5473

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013116.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgacgacgacgaacacagagagccagagagctcttcttctccgcgatgttctgttgcgcagggacatggatgccaggctcgcctttctacagaattcgagcacgagctcgctccgaatccgcgagaagctgtgtgcgttgtgcgtaccagtggttggtctcattcaggctttcatcttcagcttagttgggtgcttcgatcaccaccttccacgtcatcaacaccgagccgctttcacccacgacgacgtcgttcgcctcgctgccacctccccatttggtgtaaatgaggtggaagcattgcgtgaattgttcaacaagttgagtagttcgattctagatgatggcttaattcacaaggtatttgatgtttttgacgaaaagaaagatggcgtcattgaatttgaggagtttatccatgcattaagtgtatttcatccctgcactcctattgaacagaagattgactttgcattcaggttgtatgatttgagacagactggatatattgagtgggaagaaacatttgaagacgctgatgccgataaggatggcaaaattagcaatgatgaatggaaggcttttgtatttcggcagcctacactcgtaaagaacatgacacttccatatttaaaggacatcaccacagtcttcccaagtttcattttcaacactgaagtcgaggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

229

Amino Acids

26.39

Weight (kDa)

5.1

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
Acc16I	TGCGCA	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	155
AccII	CGCG	2 cut(s)	45, 123
AciI	CCGC	3 cut(s)	43, 121, 231
AcsI	RAATTY	2 cut(s)	94, 401
AcuI	CTGAAG	1 cut(s)	163
AcyI	GRCGYC	2 cut(s)	249, 393
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	5 cut(s)	316, 401, 455, 530, 670
AjiI	CACGTC	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	4 cut(s)	32, 108, 130, 183
AluI	AGCT	4 cut(s)	32, 108, 130, 183
Alw21I	GWGCWC	3 cut(s)	34, 104, 110
Alw26I	GTCTC	2 cut(s)	164, 487
ApeKI	GCWGC	2 cut(s)	263, 595
ApoI	RAATTY	2 cut(s)	94, 401
AspLEI	GCGC	1 cut(s)	60
AsuHPI	GGTGA	3 cut(s)	194, 229, 634
BanII	GRGCYC	2 cut(s)	34, 110
BauI	CACGAG	1 cut(s)	103
BbsI	GAAGAC	2 cut(s)	537, 643
Bbv12I	GWGCWC	3 cut(s)	34, 104, 110
BbvI	GCAGC	2 cut(s)	250, 607
BccI	CCATC	3 cut(s)	338, 383, 545
BciT130I	CCWGG	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	164, 487
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	89
BisI	GCNGC	3 cut(s)	231, 264, 596
BlsI	GCNGC	3 cut(s)	232, 265, 597
Bme1390I	CCNGG	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	61, 529
BpiI	GAAGAC	2 cut(s)	537, 643
BsaHI	GRCGYC	2 cut(s)	249, 393
BsaI	GGTCTC	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	149, 505
Bse3DI	GCAATG	2 cut(s)	299, 571
BseBI	CCWGG	1 cut(s)	76
BseGI	GGATG	3 cut(s)	76, 436, 556
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	2 cut(s)	299, 571
BseNI	ACTGG	2 cut(s)	149, 505
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	2 cut(s)	250, 607
BsgI	GTGCAG	1 cut(s)	427
Bsh1236I	CGCG	2 cut(s)	45, 123
BsiHKAI	GWGCWC	3 cut(s)	34, 104, 110
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	2 cut(s)	164, 487
BsmFI	GGGAC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	473
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	34, 104, 110
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	3 cut(s)	43, 121, 231
BspFNI	CGCG	2 cut(s)	45, 123
BspQI	GCTCTTC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	2 cut(s)	299, 571
BsrI	ACTGG	2 cut(s)	149, 505
BssMI	GATC	1 cut(s)	199
BssNI	GRCGYC	2 cut(s)	249, 393
BssSI	CACGAG	1 cut(s)	103
Bst2BI	CACGAG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	649
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	2 cut(s)	249, 393
BstC8I	GCNNGC	2 cut(s)	81, 110
BstDEI	CTNAG	1 cut(s)	184
BstF5I	GGATG	3 cut(s)	76, 436, 556
BstFNI	CGCG	2 cut(s)	45, 123
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	2 cut(s)	164, 487
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 561
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	89
BstUI	CGCG	2 cut(s)	45, 123
BstV1I	GCAGC	2 cut(s)	250, 607
BstV2I	GAAGAC	2 cut(s)	537, 643
BtgZI	GCGATG	1 cut(s)	60
BtrI	CACGTC	1 cut(s)	215
BtsCI	GGATG	3 cut(s)	76, 436, 556
BtsIMutI	CAGTG	2 cut(s)	156, 672
Cac8I	GCNNGC	2 cut(s)	81, 110
CfoI	GCGC	1 cut(s)	60
CseI	GACGC	2 cut(s)	382, 542
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	3 cut(s)	67, 419, 616
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DraI	TTTAAA	1 cut(s)	633
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	2 cut(s)	32, 108
Eco24I	GRGCYC	2 cut(s)	34, 110
Eco31I	GGTCTC	1 cut(s)	164
Eco53kI	GAGCTC	2 cut(s)	32, 108
Eco57I	CTGAAG	1 cut(s)	163
EcoICRI	GAGCTC	2 cut(s)	32, 108
EcoRI	GAATTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	74
EcoT22I	ATGCAT	1 cut(s)	424
EcoT38I	GRGCYC	2 cut(s)	34, 110
FaeI	CATG	3 cut(s)	70, 422, 619
FaiI	YATR	6 cut(s)	68, 420, 486, 507, 617, 628
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	3 cut(s)	66, 418, 615
Fnu4HI	GCNGC	3 cut(s)	231, 264, 596
FokI	GGATG	3 cut(s)	83, 423, 563
FriOI	GRGCYC	2 cut(s)	34, 110
Fsp4HI	GCNGC	3 cut(s)	231, 264, 596
FspBI	CTAG	1 cut(s)	338
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	3 cut(s)	231, 264, 596
HgaI	GACGC	2 cut(s)	382, 542
HhaI	GCGC	1 cut(s)	60
Hin1I	GRCGYC	2 cut(s)	249, 393
Hin1II	CATG	3 cut(s)	70, 422, 619
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	117, 334
HphI	GGTGA	3 cut(s)	194, 229, 634
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	338
Hpy99I	CGWCG	5 cut(s)	10, 13, 248, 251, 254
HpyAV	CCTTC	2 cut(s)	218, 571
HpyCH4III	ACNGT	1 cut(s)	649
HpyCH4IV	ACGT	2 cut(s)	214, 249
HpyCH4V	TGCA	3 cut(s)	422, 444, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 561
HpyF3I	CTNAG	1 cut(s)	184
HpySE526I	ACGT	2 cut(s)	214, 249
Hsp92I	GRCGYC	2 cut(s)	249, 393
Hsp92II	CATG	3 cut(s)	70, 422, 619
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	199
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	9 cut(s)	38, 46, 61, 88, 152, 162, 454, 463, 486
Lsp1109I	GCAGC	2 cut(s)	250, 607
LweI	GCATC	2 cut(s)	61, 529
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	2 cut(s)	214, 249
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	7 cut(s)	26, 29, 169, 472, 530, 542, 643
MhlI	GDGCHC	3 cut(s)	34, 104, 110
MluCI	AATT	5 cut(s)	94, 308, 351, 401, 558
MnlI	CCTC	5 cut(s)	269, 280, 283, 400, 676
Mph1103I	ATGCAT	1 cut(s)	424
MseI	TTAA	3 cut(s)	350, 425, 632
MspR9I	CCNGG	1 cut(s)	76
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	2 cut(s)	45, 123
MwoI	GCNNNNNNNGC	2 cut(s)	80, 561
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	3 cut(s)	70, 422, 619
NsbI	TGCGCA	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	424
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 540
PctI	GAATGC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	117, 334
PflFI	GACNNNGTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	232, 265, 597
Psp124BI	GAGCTC	2 cut(s)	34, 110
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SacI	GAGCTC	2 cut(s)	34, 110
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	350, 425, 632
SatI	GCNGC	3 cut(s)	231, 264, 596
Sau3AI	GATC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	3 cut(s)	34, 104, 110
SfaNI	GCATC	2 cut(s)	61, 529
SfcI	CTRYAG	1 cut(s)	89
Sse9I	AATT	5 cut(s)	94, 308, 351, 401, 558
SsiI	CCGC	3 cut(s)	43, 121, 231
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	2 cut(s)	34, 110
StyD4I	CCNGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	649
TaiI	ACGT	2 cut(s)	217, 252
TaqI	TCGA	4 cut(s)	98, 198, 332, 681
TasI	AATT	5 cut(s)	94, 308, 351, 401, 558
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	117, 334
Tru1I	TTAA	3 cut(s)	350, 425, 632
Tru9I	TTAA	3 cut(s)	350, 425, 632
TscAI	CASTG	2 cut(s)	156, 679
TseI	GCWGC	2 cut(s)	263, 595
TspDTI	ATGAA	4 cut(s)	163, 425, 585, 652
TspRI	CASTG	2 cut(s)	156, 679
Tth111I	GACNNNGTC	1 cut(s)	248
Van91I	CCANNNNNTGG	1 cut(s)	155
XapI	RAATTY	2 cut(s)	94, 401
XbaI	TCTAGA	1 cut(s)	337
XspI	CTAG	1 cut(s)	338
ZraI	GACGTC	1 cut(s)	250
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.