Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Reverse (-)

35996976 .. 35999551

Gene Structure 2576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G412900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGATTTCTCGGTAAAAAGATCGAGTTCTTTATCATTGGGCGAGCGTATCTGCGTGGCATTTATACCGTTTATAGCAATCATAGAGGTGTTGGTTTTTGCTGTGACCGATTGCTTCAGCTACCGTCCGCGCGAAACCAAATGCCGTTTCGCTTTGGGCGATATGTCTGTCCTCGCCAATGAAACCAGATTTACCGTTAATGAGCTGGAGGCATTGTATGAGCTGTTTAAGAAGCTGAGTAGTTCAATTATCGACGACGGATCGATTCATAAGGAAGAGCTTCAATTAGCACTATTCAGAACTCCCTATGGTGAAAATCTTTTCCTGGACAGGGTTTTTGATCTCTTTGATGAAAAGAAAAATGGTGTCATTGAATTTGATGAGTTTGTTCATGCACTCAATGTCTTCCATCCATATGCCCCTATAGATGATAAAATTGATTTTGCATTTAGGCTCTATGATCTGAGACAAACCGGGTTCATTGAGCGAGAAGAAGTTAAGCAAATGGTGATTGCCATAATGATGGAATCTGACTTGAAATTGTCAGATGATCTTCTTGAGTCTATCATTGATAAGACATTTGCCGACGCTGATGCTGACAAAGATGGTAAAATTAGCAAAGAAGACTGGAAGGCTTTTGTGTTTCGACATCCAACCCTTTTGAAAAACATGACTCTTCCTTATTTGAAGGACATCACCGTGGTATTTCCAAGTTTCATTTTTCACACTGAAGTTGAAGAAGACTCAGAATTTGAAGTCTTTTCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009628 GO:0009651 GO:0009705 GO:0010959 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032879 GO:0042538 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

257

Amino Acids

29.74

Weight (kDa)

4.65

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	130, 132
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	2 cut(s)	374, 749
AcuI	CTGAAG	2 cut(s)	100, 750
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	8 cut(s)	246, 284, 374, 538, 664, 688, 737, 755
AjnI	CCWGG	1 cut(s)	324
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	5 cut(s)	120, 205, 223, 235, 280
AluI	AGCT	5 cut(s)	120, 205, 223, 235, 280
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	268
ApoI	RAATTY	2 cut(s)	374, 749
ArsI	GACNNNNNNTTYG	4 cut(s)	320, 352, 734, 766
Asp700I	GAANNNNTTC	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	3 cut(s)	323, 520, 688
BbsI	GAAGAC	3 cut(s)	397, 630, 747
BccI	CCATC	3 cut(s)	417, 517, 599
BceAI	ACGGC	1 cut(s)	129
BcgI	CGANNNNNNTGC	2 cut(s)	575, 609
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	460
BfmI	CTRYAG	1 cut(s)	423
Bme1390I	CCNGG	2 cut(s)	326, 475
BmrFI	CCNGG	2 cut(s)	326, 475
BmsI	GCATC	1 cut(s)	583
BpiI	GAAGAC	3 cut(s)	397, 630, 747
BpmI	CTGGAG	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	1 cut(s)	475
Bsa29I	ATCGAT	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	699
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	632
BseBI	CCWGG	1 cut(s)	326
BseCI	ATCGAT	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	699
BseGI	GGATG	2 cut(s)	409, 649
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	3 cut(s)	227, 455, 759
BseNI	ACTGG	1 cut(s)	632
Bsh1236I	CGCG	2 cut(s)	130, 132
BshVI	ATCGAT	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	460
Bsp143I	GATC	5 cut(s)	20, 260, 340, 460, 550
BspACI	CCGC	1 cut(s)	128
BspCNI	CTCAG	3 cut(s)	228, 456, 758
BspDI	ATCGAT	1 cut(s)	263
BspFNI	CGCG	2 cut(s)	130, 132
BspPI	GGATC	1 cut(s)	268
BspQI	GCTCTTC	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	632
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	5 cut(s)	20, 260, 340, 460, 550
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	4 cut(s)	69, 125, 196, 700
Bst6I	CTCTTC	2 cut(s)	270, 681
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	236, 464, 745
BstDSI	CCRYGG	1 cut(s)	699
BstF5I	GGATG	2 cut(s)	409, 649
BstFNI	CGCG	2 cut(s)	130, 132
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	5 cut(s)	23, 263, 343, 463, 553
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	5 cut(s)	20, 260, 340, 460, 550
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	324, 473
BstSFI	CTRYAG	1 cut(s)	423
BstUI	CGCG	2 cut(s)	130, 132
BstV2I	GAAGAC	3 cut(s)	397, 630, 747
BstXI	CCANNNNNNTGG	1 cut(s)	523
Bsu15I	ATCGAT	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	699
BtsCI	GGATG	2 cut(s)	409, 649
BtsIMutI	CAGTG	1 cut(s)	726
Cac8I	GCNNGC	1 cut(s)	44
CfoI	GCGC	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	263
CseI	GACGC	1 cut(s)	596
CviAII	CATG	2 cut(s)	392, 670
CviJI	RGCY	7 cut(s)	120, 205, 223, 235, 280, 454, 635
CviKI_1	RGCY	7 cut(s)	120, 205, 223, 235, 280, 454, 635
DdeI	CTNAG	3 cut(s)	236, 464, 745
DpnI	GATC	5 cut(s)	22, 262, 342, 462, 552
DpnII	GATC	5 cut(s)	20, 260, 340, 460, 550
Eam1104I	CTCTTC	2 cut(s)	270, 681
EarI	CTCTTC	2 cut(s)	270, 681
Eco57I	CTGAAG	2 cut(s)	100, 750
EcoRII	CCWGG	1 cut(s)	324
FaeI	CATG	2 cut(s)	395, 673
FatI	CATG	2 cut(s)	391, 669
FauNDI	CATATG	1 cut(s)	415
FokI	GGATG	2 cut(s)	396, 636
GlaI	GCGC	1 cut(s)	131
GsuI	CTGGAG	1 cut(s)	227
HapII	CCGG	1 cut(s)	474
HgaI	GACGC	1 cut(s)	596
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	395, 673
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HinfI	GANTC	5 cut(s)	265, 527, 560, 673, 743
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	3 cut(s)	323, 520, 688
Hpy188I	TCNGA	5 cut(s)	299, 465, 532, 547, 748
Hpy188III	TCNNGA	1 cut(s)	557
Hpy99I	CGWCG	3 cut(s)	257, 260, 590
HpyAV	CCTTC	2 cut(s)	625, 682
HpyCH4III	ACNGT	4 cut(s)	69, 125, 196, 700
HpyCH4V	TGCA	2 cut(s)	395, 446
HpyF3I	CTNAG	3 cut(s)	236, 464, 745
Hsp92II	CATG	2 cut(s)	395, 673
HspAI	GCGC	1 cut(s)	130
Kzo9I	GATC	5 cut(s)	20, 260, 340, 460, 550
LguI	GCTCTTC	1 cut(s)	270
LpnPI	CCDG	7 cut(s)	191, 199, 311, 316, 338, 487, 613
LweI	GCATC	1 cut(s)	583
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	5 cut(s)	22, 262, 342, 462, 552
MboI	GATC	5 cut(s)	20, 260, 340, 460, 550
MboII	GAAGA	8 cut(s)	287, 397, 503, 545, 635, 668, 749, 752
MluCI	AATT	7 cut(s)	246, 284, 374, 435, 539, 612, 749
MlyI	GAGTC	3 cut(s)	569, 667, 737
MmeI	TCCRAC	1 cut(s)	677
MnlI	CCTC	3 cut(s)	79, 182, 202
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	3 cut(s)	198, 228, 498
MslI	CAYNNNNRTG	4 cut(s)	86, 414, 521, 698
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	326, 475
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	2 cut(s)	130, 132
NciI	CCSGG	1 cut(s)	475
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	5 cut(s)	20, 260, 340, 460, 550
NlaIII	CATG	2 cut(s)	395, 673
NmuCI	GTSAC	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	265, 527
PfoI	TCCNGGA	1 cut(s)	324
PleI	GAGTC	3 cut(s)	568, 667, 737
PpsI	GAGTC	3 cut(s)	568, 667, 737
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
RseI	CAYNNNNRTG	4 cut(s)	86, 414, 521, 698
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	3 cut(s)	198, 228, 498
Sau3AI	GATC	5 cut(s)	20, 260, 340, 460, 550
SchI	GAGTC	3 cut(s)	569, 667, 737
ScrFI	CCNGG	2 cut(s)	326, 475
SetI	ASST	6 cut(s)	90, 122, 207, 225, 237, 282
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	4 cut(s)	86, 414, 521, 698
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	7 cut(s)	246, 284, 374, 435, 539, 612, 749
SsiI	CCGC	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	324, 473
TaaI	ACNGT	4 cut(s)	69, 125, 196, 700
TaqI	TCGA	4 cut(s)	23, 252, 263, 646
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	7 cut(s)	246, 284, 374, 435, 539, 612, 749
TfiI	GAWTC	2 cut(s)	265, 527
Tru1I	TTAA	3 cut(s)	198, 228, 498
Tru9I	TTAA	3 cut(s)	198, 228, 498
TscAI	CASTG	1 cut(s)	733
TseFI	GTSAC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	6 cut(s)	195, 257, 366, 380, 469, 706
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	733
XapI	RAATTY	2 cut(s)	374, 749
XmnI	GAANNNNTTC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.