Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Reverse (-)

24309615 .. 24312727

Gene Structure 3113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGACGACGACGAACACCGAGAGGCAGAGAGCTCTTCTTCTCCGCGATCTTCTGTTGCGCAGGGACATGGACTTCAGGCTCAGCTTTCTGGATTCGAGCACGAGCTCGCTCTCGCTCCAAATCGGCGAGAAGCTGTGTGCGTTGTGCATACCAGTGGTTGGTCTGATCGAGGCTTTCATCTTCAGCTTAGCCGGCTGCTTCGAACAACACCGTCCACGTCGTCACCACCGAGCCGCTTTCACCCACGACGACGTCGTTCGCCTCGCTGCCACCTCCCCATTTAGTGTAAATGACGTGGAAGCATTGCGTGAATTGTTCAACAAGTTGAGTAGTTCCATTCTAGATGATGGCTTAATTCACAAGGAGGAGCTTCAGTTGGCTCTGTTCAAAACTCAAGCAGGCGAAAATATTTTTCTTGATAGGGTATTTGATGTTTTTGACGAAAAGAAAAATGGAGTCATTGAATTTGAGGAGTTTATCCATGCATTAAGTGTATTTCATCCCTGCACTCCTCTTGAACAGAAGATTGACTTTGCATTCAGGTTGTATGATTTGAGACAGACTGGATATATTGAGCGGGAAGAAGTTACGCAAATGGTAGTCGCCACTTTGTTGGAATCCGGTATACAGGTGCCGGATGAAATTCTAGAAACAATTGTGGATAAGACATTTGAAGATGCTGATGCCGATAAGGATGGCAAAATTAGCAGCGATGAATGGAAGGCTTTTGTATTTCGGCAGCCTACACTCGTAAAGAACATGACACTTCCATATTTAAAGGACATCACCACAGTCTTCCCAAGTTTTATTTTCAACACTGAAGTCGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

277

Amino Acids

31.77

Weight (kDa)

4.84

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	173 - 239	5.3e-10	EF-hand domain pair
EF-hand_1	PF00036	220 - 244	6.5e-06	EF hand domain
EF-hand_5	PF13202	220 - 244	1e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
Acc16I	TGCGCA	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	631
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	625
AccII	CGCG	1 cut(s)	45
AciI	CCGC	3 cut(s)	43, 234, 577
AcsI	RAATTY	2 cut(s)	464, 642
AcuI	CTGAAG	3 cut(s)	58, 166, 356
AcyI	GRCGYC	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	6 cut(s)	319, 388, 464, 518, 674, 814
AjiI	CACGTC	2 cut(s)	218, 295
AluBI	AGCT	6 cut(s)	32, 84, 105, 133, 186, 370
AluI	AGCT	6 cut(s)	32, 84, 105, 133, 186, 370
Alw21I	GWGCWC	3 cut(s)	34, 101, 107
Alw26I	GTCTC	1 cut(s)	550
ApeKI	GCWGC	4 cut(s)	195, 266, 708, 739
ApoI	RAATTY	2 cut(s)	464, 642
AspLEI	GCGC	1 cut(s)	60
AsuHPI	GGTGA	3 cut(s)	215, 232, 778
AsuII	TTCGAA	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	631
BanII	GRGCYC	2 cut(s)	34, 107
BauI	CACGAG	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	787
Bbv12I	GWGCWC	3 cut(s)	34, 101, 107
BbvI	GCAGC	4 cut(s)	182, 253, 720, 751
BccI	CCATC	2 cut(s)	341, 689
BcoDI	GTCTC	1 cut(s)	550
BfaI	CTAG	2 cut(s)	341, 647
BisI	GCNGC	5 cut(s)	196, 234, 267, 709, 740
BlpI	GCTNAGC	2 cut(s)	80, 187
BlsI	GCNGC	5 cut(s)	197, 235, 268, 710, 741
BmgBI	CACGTC	2 cut(s)	218, 295
BmiI	GGNNCC	1 cut(s)	633
BmsI	GCATC	2 cut(s)	667, 673
BpiI	GAAGAC	1 cut(s)	787
Bpu1102I	GCTNAGC	2 cut(s)	80, 187
Bpu14I	TTCGAA	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	152, 568
Bse3DI	GCAATG	1 cut(s)	302
BseGI	GGATG	3 cut(s)	499, 643, 700
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	2 cut(s)	152, 568
BseRI	GAGGAG	3 cut(s)	380, 485, 501
BseXI	GCAGC	4 cut(s)	182, 253, 720, 751
BsgI	GTGCAG	1 cut(s)	490
Bsh1236I	CGCG	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	631
BsiHKAI	GWGCWC	3 cut(s)	34, 101, 107
BsiSI	CCGG	3 cut(s)	192, 621, 635
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	550
BsmFI	GGGAC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	536
Bsp119I	TTCGAA	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	34, 101, 107
Bsp143I	GATC	2 cut(s)	46, 165
Bsp1720I	GCTNAGC	2 cut(s)	80, 187
BspACI	CCGC	3 cut(s)	43, 234, 577
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	633
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	201
BspT107I	GGYRCC	1 cut(s)	631
BsrBI	CCGCTC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	152, 568
BssAI	RCCGGY	1 cut(s)	191
BssMI	GATC	2 cut(s)	46, 165
BssNAI	GTATAC	1 cut(s)	626
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	626
Bst2BI	CACGAG	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	212, 793
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	252
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	3 cut(s)	107, 193, 400
BstDEI	CTNAG	2 cut(s)	80, 187
BstF5I	GGATG	3 cut(s)	499, 643, 700
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	49, 168
BstMAI	GTCTC	1 cut(s)	550
BstMBI	GATC	2 cut(s)	46, 165
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 705
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	4 cut(s)	182, 253, 720, 751
BstV2I	GAAGAC	1 cut(s)	787
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstZ17I	GTATAC	1 cut(s)	626
BtgZI	GCGATG	1 cut(s)	726
BtrI	CACGTC	2 cut(s)	218, 295
BtsCI	GGATG	3 cut(s)	499, 643, 700
BtsIMutI	CAGTG	2 cut(s)	159, 816
Cac8I	GCNNGC	3 cut(s)	107, 193, 400
CfoI	GCGC	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	191
CviAII	CATG	3 cut(s)	67, 482, 760
DdeI	CTNAG	2 cut(s)	80, 187
DpnI	GATC	2 cut(s)	48, 167
DpnII	GATC	2 cut(s)	46, 165
DraI	TTTAAA	1 cut(s)	777
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	2 cut(s)	32, 105
Eco24I	GRGCYC	2 cut(s)	34, 107
Eco53kI	GAGCTC	2 cut(s)	32, 105
Eco57I	CTGAAG	3 cut(s)	58, 166, 356
EcoICRI	GAGCTC	2 cut(s)	32, 105
EcoT22I	ATGCAT	1 cut(s)	487
EcoT38I	GRGCYC	2 cut(s)	34, 107
FaeI	CATG	3 cut(s)	70, 485, 763
FaiI	YATR	8 cut(s)	68, 149, 483, 549, 570, 626, 761, 772
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	3 cut(s)	66, 481, 759
FauI	CCCGC	1 cut(s)	570
FblI	GTMKAC	1 cut(s)	625
Fnu4HI	GCNGC	5 cut(s)	196, 234, 267, 709, 740
FokI	GGATG	3 cut(s)	486, 650, 707
FriOI	GRGCYC	2 cut(s)	34, 107
Fsp4HI	GCNGC	5 cut(s)	196, 234, 267, 709, 740
FspBI	CTAG	2 cut(s)	341, 647
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	5 cut(s)	196, 234, 267, 709, 740
HapII	CCGG	3 cut(s)	192, 621, 635
HhaI	GCGC	1 cut(s)	60
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	70, 485, 763
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	3 cut(s)	92, 456, 617
HpaII	CCGG	3 cut(s)	192, 621, 635
HphI	GGTGA	3 cut(s)	215, 232, 778
Hpy166II	GTNNAC	2 cut(s)	215, 626
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	5 cut(s)	89, 341, 416, 515, 647
Hpy8I	GTNNAC	2 cut(s)	215, 626
Hpy99I	CGWCG	6 cut(s)	10, 13, 222, 251, 254, 257
HpyAV	CCTTC	1 cut(s)	715
HpyCH4III	ACNGT	2 cut(s)	212, 793
HpyCH4IV	ACGT	3 cut(s)	217, 252, 294
HpyCH4V	TGCA	4 cut(s)	147, 485, 507, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 705
HpyF3I	CTNAG	2 cut(s)	80, 187
HpySE526I	ACGT	3 cut(s)	217, 252, 294
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	70, 485, 763
HspAI	GCGC	1 cut(s)	58
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	46, 165
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	120, 367
Lsp1109I	GCAGC	4 cut(s)	182, 253, 720, 751
LweI	GCATC	2 cut(s)	667, 673
MaeI	CTAG	2 cut(s)	341, 647
MaeII	ACGT	3 cut(s)	217, 252, 294
MaeIII	GTNAC	2 cut(s)	221, 586
MalI	GATC	2 cut(s)	48, 167
MbiI	CCGCTC	1 cut(s)	577
MboI	GATC	2 cut(s)	46, 165
MboII	GAAGA	8 cut(s)	26, 29, 41, 172, 535, 593, 686, 787
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	3 cut(s)	34, 101, 107
MluCI	AATT	6 cut(s)	311, 354, 464, 642, 654, 702
MlyI	GAGTC	1 cut(s)	465
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	8 cut(s)	15, 163, 272, 283, 358, 463, 522, 820
Mph1103I	ATGCAT	1 cut(s)	487
MroNI	GCCGGC	1 cut(s)	191
MseI	TTAA	3 cut(s)	353, 488, 776
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	3 cut(s)	192, 621, 635
MunI	CAATTG	1 cut(s)	654
Mva1269I	GAATGC	1 cut(s)	536
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	192, 705
NaeI	GCCGGC	1 cut(s)	193
NdeII	GATC	2 cut(s)	46, 165
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	3 cut(s)	70, 485, 763
NlaIV	GGNNCC	1 cut(s)	633
NmuCI	GTSAC	1 cut(s)	221
NsbI	TGCGCA	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	487
NspV	TTCGAA	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	226, 252
PctI	GAATGC	1 cut(s)	536
PdiI	GCCGGC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	92, 617
PflFI	GACNNNGTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	5 cut(s)	197, 235, 268, 710, 741
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
Psp124BI	GAGCTC	2 cut(s)	34, 107
PspN4I	GGNNCC	1 cut(s)	633
PsyI	GACNNNGTC	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	2 cut(s)	34, 107
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	353, 488, 776
SatI	GCNGC	5 cut(s)	196, 234, 267, 709, 740
Sau3AI	GATC	2 cut(s)	46, 165
SchI	GAGTC	1 cut(s)	465
SduI	GDGCHC	3 cut(s)	34, 101, 107
SfaNI	GCATC	2 cut(s)	667, 673
SfuI	TTCGAA	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
Sse9I	AATT	6 cut(s)	311, 354, 464, 642, 654, 702
SsiI	CCGC	3 cut(s)	43, 234, 577
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	2 cut(s)	341, 647
SstI	GAGCTC	2 cut(s)	34, 107
TaaI	ACNGT	2 cut(s)	212, 793
TaiI	ACGT	3 cut(s)	220, 255, 297
TaqI	TCGA	4 cut(s)	95, 168, 201, 825
TasI	AATT	6 cut(s)	311, 354, 464, 642, 654, 702
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	92, 617
Tru1I	TTAA	3 cut(s)	353, 488, 776
Tru9I	TTAA	3 cut(s)	353, 488, 776
TscAI	CASTG	2 cut(s)	159, 823
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	4 cut(s)	195, 266, 708, 739
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	166, 488, 654, 729
TspRI	CASTG	2 cut(s)	159, 823
Tth111I	GACNNNGTC	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	158
XapI	RAATTY	2 cut(s)	464, 642
XbaI	TCTAGA	2 cut(s)	340, 646
XmiI	GTMKAC	1 cut(s)	625
XspI	CTAG	2 cut(s)	341, 647
ZraI	GACGTC	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.