Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Forward (+)

67162261 .. 67163078

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG512400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGACAATTACTCTTTGAGAACGAGCTCTCTATCATTGGGCGAGAAGCTGTGCGCGGCGTTCATACCGTTTGTAGCGATCATAGAGGTGTTGGTTTTGGCCGTCACCGATTGCTTCACTTACCGGCCTCGCCCTGTCAAACGTGCTTACGCTTTCGGAGACATGACTCAGCTCGCCCGGGAATCTCGATTTAGTGTTAATGAGCTGGAGGCGTTGTATGAGCTGTTTAAGAAGTTGAGTAGCTCGATCATCGACGACGGGTTGATTCACAAGGAAGAGCTTCAATTAGCACTGTTCCAAACTCCCCAGGGCGAAAATCTTTTCCTTGACCGGGTAAGTATGGCAAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009628 GO:0009651 GO:0009705 GO:0010959 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032879 GO:0042538 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

117

Amino Acids

13.26

Weight (kDa)

5.11

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	56
AciI	CCGC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	7 cut(s)	27, 49, 172, 205, 223, 243, 280
AluI	AGCT	7 cut(s)	27, 49, 172, 205, 223, 243, 280
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	2 cut(s)	99, 125
Asp700I	GAANNNNTTC	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	56
AsuC2I	CCSGG	3 cut(s)	178, 179, 332
AsuHPI	GGTGA	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	3 cut(s)	178, 179, 332
BcoDI	GTCTC	1 cut(s)	153
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	4 cut(s)	178, 179, 308, 332
BmeT110I	CYCGRG	1 cut(s)	177
BmrFI	CCNGG	4 cut(s)	178, 179, 308, 332
BpmI	CTGGAG	1 cut(s)	227
BpuMI	CCSGG	3 cut(s)	178, 179, 332
BsaJI	CCNNGG	3 cut(s)	177, 306, 307
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	177, 306, 307
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	101, 127
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	124, 178, 331
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	153
BsnI	GGCC	2 cut(s)	101, 127
BsoBI	CYCGRG	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	78, 246
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	2 cut(s)	101, 127
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	56
BspQI	GCTCTTC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	3 cut(s)	177, 306, 307
BssMI	GATC	2 cut(s)	78, 246
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	69, 294
Bst6I	CTCTTC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	81, 249
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	2 cut(s)	78, 246
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	4 cut(s)	176, 177, 306, 330
BstUI	CGCG	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	101, 127
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	123
Cfr9I	CCCGGG	1 cut(s)	177
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	9 cut(s)	27, 49, 101, 127, 172, 205, 223, 243, 280
CviKI_1	RGCY	9 cut(s)	27, 49, 101, 127, 172, 205, 223, 243, 280
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	2 cut(s)	80, 248
DpnII	GATC	2 cut(s)	78, 246
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	1 cut(s)	166
FaiI	YATR	5 cut(s)	65, 83, 164, 219, 341
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	101, 127
HapII	CCGG	3 cut(s)	124, 178, 331
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	3 cut(s)	166, 182, 265
HpaII	CCGG	3 cut(s)	124, 178, 331
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	186
Hpy99I	CGWCG	2 cut(s)	257, 260
HpyCH4III	ACNGT	2 cut(s)	69, 294
HpyCH4IV	ACGT	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	78, 246
LguI	GCTCTTC	1 cut(s)	270
LpnPI	CCDG	7 cut(s)	137, 147, 191, 191, 293, 320, 344
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	2 cut(s)	80, 248
MboI	GATC	2 cut(s)	78, 246
MboII	GAAGA	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	2 cut(s)	7, 284
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	3 cut(s)	79, 138, 202
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	3 cut(s)	198, 228, 352
MslI	CAYNNNNRTG	1 cut(s)	86
MspI	CCGG	3 cut(s)	124, 178, 331
MspR9I	CCNGG	4 cut(s)	178, 179, 308, 332
MvaI	CCWGG	1 cut(s)	308
MvnI	CGCG	1 cut(s)	56
NciI	CCSGG	3 cut(s)	178, 179, 332
NdeII	GATC	2 cut(s)	78, 246
NlaIII	CATG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	103
PasI	CCCWGGG	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	182, 265
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
RseI	CAYNNNNRTG	1 cut(s)	86
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	3 cut(s)	198, 228, 352
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	2 cut(s)	78, 246
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	4 cut(s)	178, 179, 308, 332
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	9 cut(s)	29, 51, 90, 145, 174, 207, 225, 245, 282
SmaI	CCCGGG	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	7, 284
SsiI	CCGC	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	4 cut(s)	176, 177, 306, 330
TaaI	ACNGT	2 cut(s)	69, 294
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	3 cut(s)	187, 245, 252
TasI	AATT	2 cut(s)	7, 284
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	2 cut(s)	182, 265
Tru1I	TTAA	3 cut(s)	198, 228, 352
Tru9I	TTAA	3 cut(s)	198, 228, 352
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	52
TspMI	CCCGGG	1 cut(s)	177
TspRI	CASTG	1 cut(s)	297
XmaI	CCCGGG	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.